Experiment set7IT085 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2335.1 -3.8 -5.2 Transport ATP-binding protein CydC compare
Xcc-8004.3731.1 -3.4 -2.2 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.2921.1 -3.3 -3.9 ferrous iron transport protein compare
Xcc-8004.4620.1 -3.0 -8.4 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2922.1 -3.0 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.3054.1 -2.9 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.2182.1 -2.8 -14.2 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.1365.1 -2.7 -1.4 FIG01211058: hypothetical protein compare
Xcc-8004.2334.1 -2.6 -7.3 Transport ATP-binding protein CydD compare
Xcc-8004.2652.1 -2.6 -2.4 response regulator compare
Xcc-8004.4039.1 -2.5 -2.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.4596.1 -2.5 -9.1 hypothetical protein compare
Xcc-8004.3041.1 -2.5 -3.5 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.1372.1 -2.5 -1.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1504.1 -2.4 -1.8 type IV pili signal transduction protein PilI compare
Xcc-8004.3346.1 -2.4 -3.5 hypothetical protein compare
Xcc-8004.3479.1 -2.4 -2.3 aklaviketone reductase compare
Xcc-8004.4384.1 -2.3 -1.7 hypothetical protein compare
Xcc-8004.1615.1 -2.3 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.130.1 -2.3 -6.4 hypothetical protein compare
Xcc-8004.1241.1 -2.2 -3.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.410.1 -2.1 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.574.1 -2.1 -7.5 Di-/tripeptide transporter compare
Xcc-8004.740.1 -2.1 -3.6 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.1027.1 -2.0 -1.6 Two-component system sensor protein compare
Xcc-8004.409.1 -2.0 -4.3 hypothetical protein compare
Xcc-8004.957.1 -2.0 -3.1 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.3979.1 -2.0 -5.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2346.1 -1.9 -2.5 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.4954.1 -1.9 -5.6 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.2923.1 -1.9 -5.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.5100.1 -1.8 -2.4 FIG01211066: hypothetical protein compare
Xcc-8004.3783.1 -1.8 -8.0 Two-component system sensor protein compare
Xcc-8004.1651.1 -1.8 -5.6 putative Cytochrome bd2, subunit I compare
Xcc-8004.4957.1 -1.8 -3.5 hypothetical protein compare
Xcc-8004.564.1 -1.7 -1.5 Mobile element protein compare
Xcc-8004.1359.1 -1.7 -5.2 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3976.1 -1.7 -3.3 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1654.1 -1.7 -1.9 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.2920.1 -1.7 -6.2 Ferrous iron transport protein B compare
Xcc-8004.4024.1 -1.7 -4.5 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.2230.1 -1.6 -3.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.4341.1 -1.6 -3.1 FIG01210371: hypothetical protein compare
Xcc-8004.3049.1 -1.6 -6.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1243.1 -1.6 -5.8 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.319.1 -1.6 -8.4 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.1720.1 -1.5 -2.9 UPF0301 protein YqgE compare
Xcc-8004.2569.1 -1.5 -2.0 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.2839.1 -1.5 -1.5 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.4285.1 -1.5 -6.9 two-component system sensor protein compare
Xcc-8004.3668.1 -1.5 -2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1164.1 -1.5 -2.5 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.494.1 -1.5 -3.7 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.618.1 -1.4 -2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.3040.1 -1.4 -2.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.1790.1 -1.4 -1.9 Zinc uptake regulation protein ZUR compare
Xcc-8004.5268.1 -1.4 -1.2 Mobile element protein compare
Xcc-8004.4507.1 -1.4 -3.8 Glycosyltransferase compare
Xcc-8004.3726.1 -1.4 -1.2 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.4810.1 -1.4 -6.5 hypothetical protein compare
Xcc-8004.1162.1 -1.4 -2.5 FIG01210644: hypothetical protein compare
Xcc-8004.1652.1 -1.4 -4.7 putative Cytochrome bd2, subunit II compare
Xcc-8004.1858.1 -1.4 -0.7 FIG01211170: hypothetical protein compare
Xcc-8004.1880.1 -1.4 -5.6 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.3395.1 -1.4 -2.2 Transcriptional regulator, GntR family compare
Xcc-8004.5202.1 -1.3 -2.7 Twin-arginine translocation protein TatC compare
Xcc-8004.1954.1 -1.3 -3.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3855.1 -1.3 -4.3 FIG01209965: hypothetical protein compare
Xcc-8004.1236.1 -1.3 -3.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.884.1 -1.3 -7.3 Rod shape-determining protein MreD compare
Xcc-8004.337.1 -1.3 -2.5 ATPase, AFG1 family compare
Xcc-8004.2131.1 -1.3 -1.8 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.950.1 -1.3 -0.9 General secretion pathway protein L compare
Xcc-8004.1619.1 -1.3 -1.8 PspA/IM30 family protein compare
Xcc-8004.3321.1 -1.3 -1.7 FIG01209847: hypothetical protein compare
Xcc-8004.2337.1 -1.2 -3.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4200.1 -1.2 -1.7 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.4322.1 -1.2 -1.5 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.127.1 -1.2 -1.3 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1838.1 -1.2 -1.0 FIG002958: hypothetical protein compare
Xcc-8004.5133.1 -1.2 -1.5 FIG01212313: hypothetical protein compare
Xcc-8004.3898.1 -1.2 -0.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.645.1 -1.2 -1.2 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.659.1 -1.2 -1.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.4313.1 -1.2 -2.6 hypothetical protein compare
Xcc-8004.1841.1 -1.2 -2.0 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.1727.1 -1.2 -0.9 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.318.1 -1.1 -5.1 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.3580.1 -1.1 -3.0 Transcriptional regulator, PadR family compare
Xcc-8004.953.1 -1.1 -2.3 Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family compare
Xcc-8004.3904.1 -1.1 -3.7 hypothetical protein compare
Xcc-8004.898.1 -1.1 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2266.1 -1.1 -1.0 FIG01211351: hypothetical protein compare
Xcc-8004.1808.1 -1.1 -2.3 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.1339.1 -1.1 -3.1 FIG01213809: hypothetical protein compare
Xcc-8004.3013.1 -1.1 -2.1 hypothetical protein compare
Xcc-8004.3320.1 -1.1 -0.9 FIG01209869: hypothetical protein compare
Xcc-8004.4976.1 -1.1 -6.2 hypothetical protein compare
Xcc-8004.4568.1 -1.1 -1.3 FIG01210028: hypothetical protein compare
Xcc-8004.4498.1 -1.1 -1.7 Mobile element protein compare
Xcc-8004.4633.1 -1.1 -1.3 FIG01210488: hypothetical protein compare
Xcc-8004.3322.1 -1.0 -0.8 FIG01211446: hypothetical protein compare
Xcc-8004.1400.1 -1.0 -1.6 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.2294.1 -1.0 -2.9 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.5125.1 -1.0 -2.4 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.5343.1 -1.0 -4.0 hypothetical protein compare
Xcc-8004.601.1 -1.0 -3.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3079.1 -1.0 -5.5 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Xcc-8004.2848.1 -1.0 -3.7 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Xcc-8004.375.1 -1.0 -1.1 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
Xcc-8004.3721.1 -1.0 -1.1 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.1228.1 -1.0 -3.8 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.1587.1 -1.0 -1.8 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Xcc-8004.155.1 -1.0 -1.1 FIG01210803: hypothetical protein compare
Xcc-8004.4529.1 -1.0 -1.1 FIG01210979: hypothetical protein compare
Xcc-8004.4046.1 -1.0 -4.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.2229.1 -1.0 -4.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.1692.1 -1.0 -3.8 FOG: TPR repeat, SEL1 subfamily compare
Xcc-8004.3812.1 -1.0 -2.9 DNA repair protein RadA compare
Xcc-8004.4710.1 -1.0 -2.1 FIG01211889: hypothetical protein compare
Xcc-8004.3536.1 -1.0 -2.9 FIG01210913: hypothetical protein compare
Xcc-8004.5168.1 -1.0 -0.7 hypothetical protein compare
Xcc-8004.4441.1 -1.0 -1.9 Tyrosine recombinase XerD compare
Xcc-8004.399.1 -1.0 -0.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.629.1 -1.0 -2.3 hypothetical protein compare
Xcc-8004.4292.1 -0.9 -1.3 Taurine transport ATP-binding protein TauB compare
Xcc-8004.1056.1 -0.9 -2.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.118.1 -0.9 -2.4 FIG037995: Hypothetical protein compare
Xcc-8004.4514.1 -0.9 -5.7 Glycosyltransferase compare
Xcc-8004.878.1 -0.9 -3.3 Sugar kinase compare
Xcc-8004.1220.1 -0.9 -3.2 Protein YicC compare
Xcc-8004.1226.1 -0.9 -1.0 FIG01210021: hypothetical protein compare
Xcc-8004.4510.1 -0.9 -0.6 ATP binding component of ABC-transporter compare
Xcc-8004.4890.1 -0.9 -6.9 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.2385.1 -0.9 -5.5 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.4503.1 -0.9 -3.8 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.3492.1 -0.9 -0.9 FIG01211425: hypothetical protein compare
Xcc-8004.4517.1 -0.9 -4.4 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.321.1 -0.9 -5.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.3846.1 -0.9 -2.4 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Xcc-8004.1138.1 -0.9 -2.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.3955.1 -0.9 -2.3 HflK protein compare
Xcc-8004.2935.1 -0.9 -6.5 Amino acid transporters compare
Xcc-8004.4112.1 -0.9 -2.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1567.1 -0.9 -2.2 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.2705.1 -0.9 -3.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.3698.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.3710.1 -0.9 -1.4 hypothetical protein compare
Xcc-8004.1653.1 -0.9 -2.9 FIG01210004: hypothetical protein compare
Xcc-8004.812.1 -0.9 -1.7 histidine kinase-response regulator hybrid protein compare
Xcc-8004.4836.1 -0.9 -2.2 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.3304.1 -0.8 -0.6 FIG01211108: hypothetical protein compare
Xcc-8004.4697.1 -0.8 -1.8 FIG01210654: hypothetical protein compare
Xcc-8004.288.1 -0.8 -0.8 Ferredoxin compare
Xcc-8004.353.1 -0.8 -1.5 FIG01210121: hypothetical protein compare
Xcc-8004.4640.1 -0.8 -1.0 FIG01210726: hypothetical protein compare
Xcc-8004.2632.1 -0.8 -1.4 Minor coat protein compare
Xcc-8004.1601.1 -0.8 -2.8 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.2936.1 -0.8 -5.3 Amino acid transporters compare
Xcc-8004.2228.1 -0.8 -2.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.1911.1 -0.8 -2.2 hypothetical protein compare
Xcc-8004.1680.1 -0.8 -3.5 FIG006611: nucleotidyltransferase compare
Xcc-8004.1622.1 -0.8 -2.1 Membrane protein with DUF350 domain compare
Xcc-8004.4221.1 -0.8 -2.8 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.3345.1 -0.8 -3.8 Hypothetical nudix hydrolase YeaB compare
Xcc-8004.4264.1 -0.8 -0.7 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.3803.1 -0.8 -0.9 hypothetical protein compare
Xcc-8004.3663.1 -0.8 -2.1 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.4747.1 -0.8 -3.5 Protein of unknown function Smg compare
Xcc-8004.1809.1 -0.8 -0.9 extracellular serine protease compare
Xcc-8004.5018.1 -0.8 -2.1 FIG01210512: hypothetical protein compare
Xcc-8004.4065.1 -0.8 -3.2 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.1110.1 -0.8 -3.9 DedA protein compare
Xcc-8004.622.1 -0.8 -2.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2552.1 -0.8 -1.7 Mobile element protein compare
Xcc-8004.3590.1 -0.8 -1.0 FIG01211013: hypothetical protein compare
Xcc-8004.4231.1 -0.8 -0.7 two-component system regulatory protein compare
Xcc-8004.2217.1 -0.8 -1.7 FIG01209779: hypothetical protein compare
Xcc-8004.451.1 -0.8 -2.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.1437.1 -0.8 -2.5 Kup system potassium uptake protein compare
Xcc-8004.3339.1 -0.8 -3.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.2559.1 -0.8 -1.1 hypothetical protein compare
Xcc-8004.1912.1 -0.8 -4.5 Cell wall-associated hydrolases (invasion-associated proteins) compare
Xcc-8004.2782.1 -0.8 -3.1 Flagellar basal-body rod protein FlgF compare
Xcc-8004.1205.1 -0.8 -1.2 hypothetical protein compare
Xcc-8004.565.1 -0.8 -3.0 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.471.1 -0.8 -2.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.997.1 -0.8 -1.4 Possible GRAM domain compare
Xcc-8004.1955.1 -0.8 -2.7 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.2659.1 -0.8 -0.8 FIG01212223: hypothetical protein compare
Xcc-8004.411.1 -0.8 -1.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1001.1 -0.7 -2.1 FIG01213217: hypothetical protein compare
Xcc-8004.5130.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.1822.1 -0.7 -1.1 Transcriptional regulator, MarR family compare
Xcc-8004.837.1 -0.7 -0.7 FIG01210690: hypothetical protein compare
Xcc-8004.5373.1 -0.7 -2.1 FIG01210567: hypothetical protein compare
Xcc-8004.3683.1 -0.7 -4.1 Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) compare
Xcc-8004.3438.1 -0.7 -4.5 Serine peptidase compare
Xcc-8004.1204.1 -0.7 -1.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.3212.1 -0.7 -2.1 phage-related integrase compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments