Experiment set7IT084 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2879.1 -4.7 -1.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1900.1 -4.6 -3.3 Acyl-CoA thioester hydrolase compare
Xcc-8004.3041.1 -3.5 -4.2 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.1651.1 -3.2 -9.5 putative Cytochrome bd2, subunit I compare
Xcc-8004.623.1 -3.1 -2.1 Phosphoserine phosphatase compare
Xcc-8004.1241.1 -3.1 -5.9 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3976.1 -3.0 -4.3 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2921.1 -2.8 -3.4 ferrous iron transport protein compare
Xcc-8004.713.1 -2.8 -1.2 FIG01210186: hypothetical protein compare
Xcc-8004.3752.1 -2.8 -2.4 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.2182.1 -2.7 -13.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2922.1 -2.7 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.4231.1 -2.6 -1.4 two-component system regulatory protein compare
Xcc-8004.2842.1 -2.6 -2.2 FIG01212239: hypothetical protein compare
Xcc-8004.2339.1 -2.5 -2.4 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.4620.1 -2.5 -7.5 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2920.1 -2.5 -9.5 Ferrous iron transport protein B compare
Xcc-8004.4046.1 -2.4 -9.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3794.1 -2.3 -1.8 Mobile element protein compare
Xcc-8004.1652.1 -2.3 -7.0 putative Cytochrome bd2, subunit II compare
Xcc-8004.1266.1 -2.3 -3.4 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.337.1 -2.3 -3.2 ATPase, AFG1 family compare
Xcc-8004.2923.1 -2.3 -9.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.1372.1 -2.2 -1.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1359.1 -2.1 -6.1 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.649.1 -2.1 -1.8 hypothetical protein compare
Xcc-8004.2334.1 -2.1 -5.6 Transport ATP-binding protein CydD compare
Xcc-8004.1504.1 -2.0 -1.8 type IV pili signal transduction protein PilI compare
Xcc-8004.2266.1 -2.0 -2.0 FIG01211351: hypothetical protein compare
Xcc-8004.3040.1 -2.0 -2.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.2110.1 -2.0 -1.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.99.1 -2.0 -2.4 FIG01211055: hypothetical protein compare
Xcc-8004.4251.1 -1.9 -2.1 hypothetical protein compare
Xcc-8004.3855.1 -1.8 -6.4 FIG01209965: hypothetical protein compare
Xcc-8004.3979.1 -1.8 -5.8 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3451.1 -1.8 -2.5 hypothetical protein compare
Xcc-8004.94.1 -1.8 -1.2 Transcriptional regulator, LuxR family compare
Xcc-8004.1434.1 -1.8 -1.6 FIG000859: hypothetical protein YebC compare
Xcc-8004.1660.1 -1.7 -0.9 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.3783.1 -1.7 -7.7 Two-component system sensor protein compare
Xcc-8004.2335.1 -1.7 -4.4 Transport ATP-binding protein CydC compare
Xcc-8004.1138.1 -1.7 -5.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.574.1 -1.7 -6.5 Di-/tripeptide transporter compare
Xcc-8004.318.1 -1.7 -4.9 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.5253.1 -1.6 -1.1 hypothetical protein compare
Xcc-8004.659.1 -1.6 -2.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.4596.1 -1.6 -7.1 hypothetical protein compare
Xcc-8004.3049.1 -1.6 -6.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.4844.1 -1.6 -0.8 FIG01210764: hypothetical protein compare
Xcc-8004.1616.1 -1.6 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.1243.1 -1.6 -4.0 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.2574.1 -1.5 -1.4 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.2346.1 -1.5 -1.9 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.1228.1 -1.5 -5.4 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.1236.1 -1.5 -3.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.770.1 -1.5 -2.1 hypothetical protein compare
Xcc-8004.4640.1 -1.4 -1.5 FIG01210726: hypothetical protein compare
Xcc-8004.2228.1 -1.4 -3.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.4285.1 -1.4 -6.7 two-component system sensor protein compare
Xcc-8004.3108.1 -1.4 -2.9 Regulatory protein RecX compare
Xcc-8004.494.1 -1.4 -4.5 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.5343.1 -1.4 -4.2 hypothetical protein compare
Xcc-8004.2565.1 -1.4 -2.3 hypothetical protein compare
Xcc-8004.4954.1 -1.4 -5.7 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.601.1 -1.4 -4.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4112.1 -1.4 -2.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3723.1 -1.4 -1.7 hypothetical protein compare
Xcc-8004.1137.1 -1.4 -0.9 FIG006231: RNA-binding protein compare
Xcc-8004.4743.1 -1.4 -3.6 Peptide deformylase (EC 3.5.1.88) compare
Xcc-8004.130.1 -1.4 -4.7 hypothetical protein compare
Xcc-8004.787.1 -1.3 -0.9 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.2217.1 -1.3 -3.1 FIG01209779: hypothetical protein compare
Xcc-8004.1205.1 -1.3 -2.2 hypothetical protein compare
Xcc-8004.3346.1 -1.3 -2.5 hypothetical protein compare
Xcc-8004.2389.1 -1.3 -1.1 protein of unknown function DUF1244 compare
Xcc-8004.4810.1 -1.3 -6.4 hypothetical protein compare
Xcc-8004.3721.1 -1.3 -1.5 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.3310.1 -1.3 -3.1 Chromosome partition protein smc compare
Xcc-8004.742.1 -1.2 -2.2 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Xcc-8004.1955.1 -1.2 -3.3 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.602.1 -1.2 -1.2 DnaJ related chaperone compare
Xcc-8004.5202.1 -1.2 -2.8 Twin-arginine translocation protein TatC compare
Xcc-8004.4294.1 -1.2 -2.6 membrane protein, putative compare
Xcc-8004.2644.1 -1.2 -1.7 hypothetical protein compare
Xcc-8004.5168.1 -1.2 -0.8 hypothetical protein compare
Xcc-8004.5297.1 -1.2 -2.6 Thioredoxin reductase (EC 1.8.1.9) compare
Xcc-8004.1436.1 -1.2 -1.4 Holliday junction DNA helicase RuvA compare
Xcc-8004.401.1 -1.1 -1.4 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.1727.1 -1.1 -1.0 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.3612.1 -1.1 -1.0 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.4191.1 -1.1 -4.6 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.5166.1 -1.1 -1.6 hypothetical protein compare
Xcc-8004.2059.1 -1.1 -1.7 hypothetical protein compare
Xcc-8004.3660.1 -1.1 -2.4 Cold shock protein CspD compare
Xcc-8004.1710.1 -1.1 -3.5 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.619.1 -1.1 -1.6 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) compare
Xcc-8004.609.1 -1.1 -1.2 hypothetical protein compare
Xcc-8004.576.1 -1.1 -2.4 FIG01210281: hypothetical protein compare
Xcc-8004.4699.1 -1.1 -0.9 Flagellar motor protein compare
Xcc-8004.2711.1 -1.1 -1.4 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.1416.1 -1.1 -1.7 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.3882.1 -1.1 -2.4 hypothetical protein compare
Xcc-8004.1768.1 -1.1 -1.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.1455.1 -1.1 -2.3 hypothetical protein compare
Xcc-8004.5114.1 -1.1 -4.2 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.93.1 -1.0 -1.5 FIG01211857: hypothetical protein compare
Xcc-8004.4416.1 -1.0 -4.3 hypothetical protein compare
Xcc-8004.1880.1 -1.0 -3.7 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.2168.1 -1.0 -2.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.4672.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.4200.1 -1.0 -1.7 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.4228.1 -1.0 -1.6 hypothetical protein compare
Xcc-8004.4306.1 -1.0 -1.3 hypothetical protein compare
Xcc-8004.3737.1 -1.0 -2.7 hypothetical protein compare
Xcc-8004.319.1 -1.0 -5.1 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.5303.1 -1.0 -3.0 FIG149030: hypothetical protein compare
Xcc-8004.1871.1 -1.0 -2.4 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.2930.1 -1.0 -1.2 hypothetical protein compare
Xcc-8004.1204.1 -1.0 -1.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.1567.1 -1.0 -2.8 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.1134.1 -1.0 -4.0 Protein sirB1 compare
Xcc-8004.4921.1 -1.0 -1.3 FIG01213962: hypothetical protein compare
Xcc-8004.878.1 -1.0 -3.6 Sugar kinase compare
Xcc-8004.3849.1 -1.0 -3.6 FIG01210549: hypothetical protein compare
Xcc-8004.4221.1 -1.0 -2.6 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.3698.1 -1.0 -1.3 hypothetical protein compare
Xcc-8004.2357.1 -0.9 -2.3 Segregation and condensation protein B compare
Xcc-8004.127.1 -0.9 -1.0 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1568.1 -0.9 -0.9 Glycine cleavage system H protein compare
Xcc-8004.3321.1 -0.9 -0.9 FIG01209847: hypothetical protein compare
Xcc-8004.2755.1 -0.9 -5.1 ATP-dependent Clp protease adaptor protein ClpS compare
Xcc-8004.2011.1 -0.9 -1.0 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2532.1 -0.9 -2.0 hypothetical protein compare
Xcc-8004.4945.1 -0.9 -0.6 FIG01210349: hypothetical protein compare
Xcc-8004.1522.1 -0.9 -2.8 Putative predicted metal-dependent hydrolase compare
Xcc-8004.5226.1 -0.9 -1.5 FIG01212167: hypothetical protein compare
Xcc-8004.4185.1 -0.9 -1.8 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative compare
Xcc-8004.3208.1 -0.9 -0.9 Methyltransferase type 12 compare
Xcc-8004.884.1 -0.9 -2.8 Rod shape-determining protein MreD compare
Xcc-8004.3120.1 -0.9 -1.1 RNA-binding protein Hfq compare
Xcc-8004.1242.1 -0.9 -2.4 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Xcc-8004.3154.1 -0.9 -2.6 Probable low-affinity inorganic phosphate transporter compare
Xcc-8004.4976.1 -0.9 -5.4 hypothetical protein compare
Xcc-8004.1490.1 -0.9 -3.5 FIG01211536: hypothetical protein compare
Xcc-8004.4890.1 -0.9 -6.2 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.805.1 -0.9 -1.2 Zinc transport protein ZntB compare
Xcc-8004.1621.1 -0.9 -2.4 FIG01213569: hypothetical protein compare
Xcc-8004.2117.1 -0.9 -3.1 FIG01209809: hypothetical protein compare
Xcc-8004.5189.1 -0.9 -1.2 FIG01212821: hypothetical protein compare
Xcc-8004.5368.1 -0.9 -1.3 FIG01210868: hypothetical protein compare
Xcc-8004.4526.1 -0.9 -3.9 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.1433.1 -0.9 -2.4 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.3720.1 -0.9 -3.1 Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) compare
Xcc-8004.4069.1 -0.8 -1.7 FIG01211525: hypothetical protein compare
Xcc-8004.2131.1 -0.8 -1.8 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.2561.1 -0.8 -3.3 FIG01213638: hypothetical protein compare
Xcc-8004.1512.1 -0.8 -1.1 RNA polymerase sigma-70 factor compare
Xcc-8004.1891.1 -0.8 -1.2 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.287.1 -0.8 -2.6 Haloalkane dehalogenase-like protein compare
Xcc-8004.471.1 -0.8 -2.4 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.1694.1 -0.8 -4.7 Ferrichrome-iron receptor compare
Xcc-8004.459.1 -0.8 -1.6 4-hydroxybenzoate transporter compare
Xcc-8004.2230.1 -0.8 -2.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.2372.1 -0.8 -3.3 Pheromone shutdown protein compare
Xcc-8004.1032.1 -0.8 -2.8 Sensor histidine kinase compare
Xcc-8004.2229.1 -0.8 -3.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.4523.1 -0.8 -1.4 Type II secretion system protein-like protein compare
Xcc-8004.1466.1 -0.8 -1.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.1680.1 -0.8 -3.2 FIG006611: nucleotidyltransferase compare
Xcc-8004.2861.1 -0.8 -1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.1399.1 -0.8 -2.0 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Xcc-8004.4514.1 -0.8 -5.5 Glycosyltransferase compare
Xcc-8004.957.1 -0.8 -1.2 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1132.1 -0.8 -0.9 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.2652.1 -0.8 -1.5 response regulator compare
Xcc-8004.5352.1 -0.8 -1.3 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.2892.1 -0.8 -1.6 FIG01210619: hypothetical protein compare
Xcc-8004.3322.1 -0.8 -0.6 FIG01211446: hypothetical protein compare
Xcc-8004.3566.1 -0.8 -2.0 FIG01211130: hypothetical protein compare
Xcc-8004.2520.1 -0.8 -2.0 DNA repair protein RadC compare
Xcc-8004.1048.1 -0.8 -1.2 Transcriptional regulator lysR family compare
Xcc-8004.2653.1 -0.8 -2.2 hypothetical protein compare
Xcc-8004.1788.1 -0.8 -1.4 FIG01210179: hypothetical protein compare
Xcc-8004.2012.1 -0.8 -2.9 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.4049.1 -0.8 -2.3 Cell division trigger factor (EC 5.2.1.8) compare
Xcc-8004.2928.1 -0.7 -2.5 FIG01210777: hypothetical protein compare
Xcc-8004.4065.1 -0.7 -3.0 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.1615.1 -0.7 -0.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.409.1 -0.7 -2.1 hypothetical protein compare
Xcc-8004.236.1 -0.7 -0.8 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.2935.1 -0.7 -4.9 Amino acid transporters compare
Xcc-8004.2866.1 -0.7 -2.5 hypothetical protein compare
Xcc-8004.1394.1 -0.7 -2.3 Cobyrinic acid A,C-diamide synthase compare
Xcc-8004.1437.1 -0.7 -2.6 Kup system potassium uptake protein compare
Xcc-8004.5373.1 -0.7 -2.5 FIG01210567: hypothetical protein compare
Xcc-8004.892.1 -0.7 -2.0 Coupling protein VirD4, ATPase required for T-DNA transfer compare
Xcc-8004.5133.1 -0.7 -0.7 FIG01212313: hypothetical protein compare
Xcc-8004.1961.1 -0.7 -1.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.53.1 -0.7 -1.8 hypothetical protein compare
Xcc-8004.2569.1 -0.7 -1.3 Single-stranded DNA-binding protein in PFGI-1-like cluster compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments