Experiment set7IT084 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -6.7 -4.6 Tol-Pal system protein TolB compare
IAI47_13700 -5.7 -3.9 Tol-Pal system protein TolQ compare
IAI47_17000 -4.9 -11.8 lipoprotein NlpI compare
IAI47_08705 -4.3 -4.2 carboxy terminal-processing peptidase compare
IAI47_10845 -4.3 -4.2 major outer membrane lipoprotein compare
IAI47_08085 -4.2 -5.0 helix-turn-helix domain-containing protein compare
IAI47_12275 -4.1 -20.3 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_09040 -4.0 -2.7 NAD-dependent epimerase compare
IAI47_01135 -4.0 -1.6 hypothetical protein compare
IAI47_15635 -3.9 -3.7 RNA polymerase-binding protein DksA compare
IAI47_08700 -3.6 -6.9 RNA chaperone ProQ compare
IAI47_00780 -3.5 -4.2 6-phosphofructokinase compare
IAI47_12280 -3.3 -14.8 glucan biosynthesis protein G compare
IAI47_17155 -3.2 -14.2 calcium/sodium antiporter compare
IAI47_18215 -3.2 -3.0 Trk system potassium transporter TrkH compare
IAI47_18480 -3.0 -10.1 lipid III flippase WzxE compare
IAI47_15485 -2.9 -1.9 molecular chaperone Skp compare
IAI47_00760 -2.9 -6.0 envelope stress response regulator transcription factor CpxR compare
IAI47_13695 -2.9 -1.2 colicin uptake protein TolR compare
IAI47_08355 -2.6 -4.4 flagellar protein FlhE compare
IAI47_18145 -2.6 -3.2 elongation factor Tu compare
IAI47_09580 -2.6 -4.3 FNR family transcription factor compare
IAI47_10320 -2.5 -1.3 Rrf2 family transcriptional regulator compare
IAI47_13725 -2.5 -7.2 cytochrome ubiquinol oxidase subunit I compare
IAI47_13415 -2.4 -11.0 L,D-transpeptidase family protein compare
IAI47_10835 -2.3 -1.3 tRNA-Val compare
IAI47_17965 -2.3 -12.6 glucose-6-phosphate isomerase compare
IAI47_04335 -2.3 -4.0 tRNA-Arg compare
IAI47_18470 -2.3 -12.2 ECA oligosaccharide polymerase compare
IAI47_12930 -2.3 -4.7 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_05155 -2.3 -14.2 polyphosphate kinase 1 compare
IAI47_11760 -2.2 -1.5 TonB-dependent siderophore receptor compare
IAI47_21830 -2.2 -2.5 hypothetical protein compare
IAI47_21665 -2.2 -1.9 DUF333 domain-containing protein compare
IAI47_17005 -2.1 -7.0 polyribonucleotide nucleotidyltransferase compare
IAI47_04800 -2.1 -1.5 RnfH family protein compare
IAI47_05090 -2.1 -3.1 hypothetical protein compare
IAI47_15970 -2.0 -2.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_12470 -2.0 -11.2 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_08445 -1.9 -1.8 Holliday junction branch migration protein RuvA compare
IAI47_00465 -1.9 -2.9 ribosome-dependent GTPase TypA compare
IAI47_12885 -1.9 -9.2 pyruvate formate lyase 1-activating protein compare
IAI47_21600 -1.9 -3.7 EamA family transporter compare
IAI47_12925 -1.9 -3.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_06965 -1.8 -1.8 glycosyltransferase family 2 protein compare
IAI47_09055 -1.8 -10.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_00655 -1.8 -2.6 glycosyltransferase family 4 protein compare
IAI47_13925 -1.8 -2.1 tRNA-Met compare
IAI47_03820 -1.8 -4.0 site-specific tyrosine recombinase XerD compare
IAI47_09235 -1.7 -1.8 type I DNA topoisomerase compare
IAI47_04895 -1.7 -4.0 pyridoxine 5'-phosphate synthase compare
IAI47_17235 -1.7 -8.7 stringent starvation protein A compare
IAI47_05070 -1.7 -1.0 outer membrane protein assembly factor BamB compare
IAI47_06245 -1.7 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_08440 -1.7 -1.6 crossover junction endodeoxyribonuclease RuvC compare
IAI47_16085 -1.7 -1.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_18490 -1.6 -5.4 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_07020 -1.6 -1.5 hypothetical protein compare
IAI47_07180 -1.6 -6.0 DUF496 family protein compare
IAI47_07030 -1.6 -5.3 HAD family hydrolase compare
IAI47_16420 -1.6 -10.7 LacI family DNA-binding transcriptional regulator compare
IAI47_12880 -1.6 -11.0 formate C-acetyltransferase compare
IAI47_12865 -1.5 -8.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_20595 -1.5 -4.1 GhoT/OrtT family toxin compare
IAI47_13625 -1.5 -6.4 CDF family zinc transporter ZitB compare
IAI47_00300 -1.5 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_04110 -1.5 -12.5 two-component sensor histidine kinase BarA compare
IAI47_00500 -1.5 -9.9 ATP-dependent DNA helicase RecG compare
IAI47_13950 -1.5 -1.6 PhoH family protein compare
IAI47_11310 -1.5 -3.3 redox-regulated ATPase YchF compare
IAI47_01475 -1.5 -7.4 MurR/RpiR family transcriptional regulator compare
IAI47_21595 -1.4 -6.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_13720 -1.4 -3.2 cytochrome d ubiquinol oxidase subunit II compare
IAI47_04705 -1.4 -1.3 hypothetical protein compare
IAI47_06135 -1.4 -3.3 phosphohistidine phosphatase SixA compare
IAI47_04300 -1.4 -6.1 recombinase RecA compare
IAI47_18055 -1.4 -3.7 DNA-binding protein HU-alpha compare
IAI47_18400 -1.4 -2.3 tyrosine recombinase XerC compare
IAI47_11450 -1.4 -4.3 ankyrin repeat domain-containing protein compare
IAI47_09360 -1.4 -1.3 peptide ABC transporter ATP-binding protein SapF compare
IAI47_11415 -1.4 -1.8 hypothetical protein compare
IAI47_02380 -1.4 -2.3 DNA-binding transcriptional regulator Fis compare
IAI47_13050 -1.4 -3.9 YbjN domain-containing protein compare
IAI47_17020 -1.3 -3.5 30S ribosome-binding factor RbfA compare
IAI47_03725 -1.3 -6.3 phosphoglycerate dehydrogenase compare
IAI47_05035 -1.3 -2.4 nucleoside-diphosphate kinase compare
IAI47_00375 -1.3 -11.0 ribose operon transcriptional repressor RbsR compare
IAI47_07025 -1.3 -4.4 glycosyltransferase family 4 protein compare
IAI47_18415 -1.2 -1.9 lipoprotein compare
IAI47_03375 -1.2 -6.9 peptide chain release factor 3 compare
IAI47_04120 -1.2 -9.1 GTP diphosphokinase compare
IAI47_03550 -1.2 -8.0 membrane-bound lytic murein transglycosylase MltC compare
IAI47_00940 -1.2 -6.1 HTH-type transcriptional repressor FabR compare
IAI47_09635 -1.2 -3.5 hypothetical protein compare
IAI47_06915 -1.2 -6.6 outer membrane assembly protein AsmA compare
IAI47_12565 -1.2 -7.6 bifunctional glucose-1-phosphatase/inositol phosphatase compare
IAI47_08450 -1.2 -2.4 Holliday junction branch migration DNA helicase RuvB compare
IAI47_10545 -1.2 -1.9 hypothetical protein compare
IAI47_00935 -1.2 -3.3 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_06235 -1.1 -4.3 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16995 -1.1 -1.9 protein YrbN compare
IAI47_12305 -1.1 -5.2 hypothetical protein compare
IAI47_07490 -1.1 -2.3 DNA-binding protein compare
IAI47_07015 -1.1 -4.0 ABC transporter ATP-binding protein compare
IAI47_01000 -1.1 -8.3 HTH-type transcriptional regulator HdfR compare
IAI47_14945 -1.1 -2.6 pyrroline-5-carboxylate reductase compare
IAI47_11995 -1.1 -3.5 beta-N-acetylhexosaminidase compare
IAI47_06120 -1.1 -2.6 YfcZ/YiiS family protein compare
IAI47_10725 -1.1 -1.3 DUF1656 domain-containing protein compare
IAI47_04425 -1.1 -5.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_05425 -1.1 -2.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_03590 -1.1 -5.3 YggT family protein compare
IAI47_10520 -1.0 -2.1 pyridoxamine 5'-phosphate oxidase compare
IAI47_11200 -1.0 -2.4 DotU family type IV/VI secretion system protein compare
IAI47_04805 -1.0 -3.5 outer membrane protein assembly factor BamE compare
IAI47_01005 -1.0 -6.4 DUF413 domain-containing protein compare
IAI47_15595 -1.0 -1.3 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_02400 -1.0 -1.3 YhdT family protein compare
IAI47_02260 -1.0 -3.8 Zn(2+)-responsive transcriptional regulator compare
IAI47_13180 -0.9 -3.7 manganese-binding transcriptional regulator MntR compare
IAI47_07165 -0.9 -1.3 exodeoxyribonuclease I compare
IAI47_03680 -0.9 -5.1 transketolase compare
IAI47_11830 -0.9 -4.0 muramoyltetrapeptide carboxypeptidase compare
IAI47_05120 -0.9 -2.8 DUF2158 domain-containing protein compare
IAI47_18520 -0.9 -7.4 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_05195 -0.9 -1.6 DnaA inactivator Hda compare
IAI47_08800 -0.9 -2.1 YoaH family protein compare
IAI47_21530 -0.9 -3.3 FeoA domain-containing protein compare
IAI47_15540 -0.9 -4.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_05080 -0.9 -2.5 zinc ribbon domain-containing protein compare
IAI47_00770 -0.9 -0.8 general stress protein compare
IAI47_09305 -0.9 -2.1 cyclic di-GMP phosphodiesterase compare
IAI47_04865 -0.9 -1.2 SoxR-reducing system protein RseC compare
IAI47_11470 -0.9 -2.1 IS1 family transposase compare
IAI47_12790 -0.9 -0.6 chromosome partition protein MukE compare
IAI47_13885 -0.8 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_17165 -0.8 -4.8 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_06980 -0.8 -2.3 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_00445 -0.8 -5.5 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_10565 -0.8 -1.9 DUF4113 domain-containing protein compare
IAI47_08610 -0.8 -2.7 tail fiber assembly protein compare
IAI47_02605 -0.8 -4.7 protease modulator HflC compare
IAI47_00835 -0.8 -1.9 cell division protein ZapB compare
IAI47_00675 -0.8 -6.2 glycosyltransferase family 9 protein compare
IAI47_00460 -0.8 -1.4 glutamate--ammonia ligase compare
IAI47_02040 -0.8 -5.1 peptidylprolyl isomerase compare
IAI47_20005 -0.8 -2.4 PTS sugar transporter subunit IIA compare
IAI47_07905 -0.8 -0.6 Arc family DNA-binding protein compare
IAI47_18420 -0.8 -5.2 class I adenylate cyclase compare
IAI47_20705 -0.8 -0.9 sulfur carrier protein ThiS compare
IAI47_10840 -0.8 -2.3 pyruvate kinase PykF compare
IAI47_16520 -0.8 -4.5 hypothetical protein compare
IAI47_16350 -0.8 -4.1 phosphoserine phosphatase compare
IAI47_07010 -0.8 -1.6 ABC transporter permease compare
IAI47_03615 -0.8 -4.1 glutathione synthase compare
IAI47_12355 -0.8 -1.3 hydroxymyristoyl-ACP dehydratase compare
IAI47_08680 -0.8 -4.0 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_18705 -0.8 -4.8 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_14595 -0.8 -5.6 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
IAI47_00410 -0.7 -5.2 molybdenum cofactor guanylyltransferase MobA compare
IAI47_12265 -0.7 -2.9 secY/secA suppressor protein compare
IAI47_01940 -0.7 -2.3 DUF2559 family protein compare
IAI47_05580 -0.7 -0.6 membrane protein YpdK compare
IAI47_02585 -0.7 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_08855 -0.7 -3.2 septum site-determining protein MinC compare
IAI47_15120 -0.7 -3.1 glutamate 5-kinase compare
IAI47_17560 -0.7 -0.9 ROK family transcriptional regulator compare
IAI47_00515 -0.7 -1.2 DNA-directed RNA polymerase subunit omega compare
IAI47_13770 -0.7 -4.4 citrate synthase compare
IAI47_01625 -0.7 -2.7 GNAT family N-acetyltransferase compare
IAI47_09120 -0.7 -1.8 hypothetical protein compare
IAI47_11235 -0.7 -3.5 gamma-glutamylcyclotransferase compare
IAI47_07075 -0.7 -3.2 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_03440 -0.7 -1.9 general stress protein compare
IAI47_05050 -0.7 -2.8 cytoskeleton protein RodZ compare
IAI47_16415 -0.7 -4.5 nucleoside hydrolase compare
IAI47_04750 -0.7 -1.7 hypothetical protein compare
IAI47_20480 -0.7 -2.5 YfiR family protein compare
IAI47_12655 -0.7 -4.4 Lon protease family protein compare
IAI47_11630 -0.7 -1.3 hypothetical protein compare
IAI47_08940 -0.7 -3.4 D-hexose-6-phosphate mutarotase compare
IAI47_11445 -0.7 -2.6 ankyrin repeat domain-containing protein compare
IAI47_15895 -0.6 -1.5 secA regulator SecM compare
IAI47_12650 -0.6 -2.3 macrodomain Ter protein MatP compare
IAI47_21050 -0.6 -3.3 beta-lactamase family protein compare
IAI47_10470 -0.6 -1.2 electron transport complex subunit E compare
IAI47_16080 -0.6 -3.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_07485 -0.6 -1.7 DUF4756 family protein compare
IAI47_09380 -0.6 -3.0 peptide ABC transporter substrate-binding protein SapA compare
IAI47_00455 -0.6 -4.1 nitrogen regulation protein NR(II) compare
IAI47_12605 -0.6 -3.4 CoA-binding protein compare
IAI47_02600 -0.6 -4.5 FtsH protease activity modulator HflK compare
IAI47_03640 -0.6 -4.6 glycosyltransferase compare
IAI47_20650 -0.6 -2.0 polyprenyl synthetase family protein compare
IAI47_09530 -0.6 -2.6 acid resistance repetitive basic protein Asr compare
IAI47_00670 -0.6 -5.1 sugar glycosyltransferase compare
IAI47_13495 -0.6 -2.4 GTP 3',8-cyclase MoaA compare
IAI47_18410 -0.6 -1.9 diaminopimelate epimerase compare
IAI47_05845 -0.6 -2.5 hypothetical protein compare
IAI47_08500 -0.6 -2.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms