Experiment set7IT083 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3041.1 -5.2 -3.6 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.3898.1 -4.6 -1.5 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.713.1 -4.6 -1.5 FIG01210186: hypothetical protein compare
Xcc-8004.1961.1 -4.6 -2.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.2921.1 -3.9 -2.7 ferrous iron transport protein compare
Xcc-8004.1241.1 -3.3 -5.9 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.2346.1 -3.1 -2.0 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.4620.1 -3.1 -7.9 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2182.1 -3.1 -14.0 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.1696.1 -3.1 -2.2 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1551.1 -3.0 -3.0 hypothetical protein compare
Xcc-8004.2334.1 -3.0 -7.9 Transport ATP-binding protein CydD compare
Xcc-8004.3728.1 -3.0 -2.2 hypothetical protein compare
Xcc-8004.574.1 -2.8 -7.6 Di-/tripeptide transporter compare
Xcc-8004.5202.1 -2.7 -4.9 Twin-arginine translocation protein TatC compare
Xcc-8004.3976.1 -2.7 -4.9 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2922.1 -2.7 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.130.1 -2.6 -7.4 hypothetical protein compare
Xcc-8004.385.1 -2.6 -1.6 FIG01212287: hypothetical protein compare
Xcc-8004.2920.1 -2.5 -9.6 Ferrous iron transport protein B compare
Xcc-8004.2335.1 -2.5 -5.7 Transport ATP-binding protein CydC compare
Xcc-8004.1651.1 -2.4 -8.0 putative Cytochrome bd2, subunit I compare
Xcc-8004.1359.1 -2.4 -6.2 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.1652.1 -2.3 -6.9 putative Cytochrome bd2, subunit II compare
Xcc-8004.5343.1 -2.3 -6.9 hypothetical protein compare
Xcc-8004.623.1 -2.3 -2.2 Phosphoserine phosphatase compare
Xcc-8004.1372.1 -2.3 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1436.1 -2.2 -2.1 Holliday junction DNA helicase RuvA compare
Xcc-8004.772.1 -2.2 -2.8 protease, putative compare
Xcc-8004.4605.1 -2.2 -1.9 FIG001943: hypothetical protein YajQ compare
Xcc-8004.4596.1 -2.2 -7.9 hypothetical protein compare
Xcc-8004.1236.1 -2.2 -5.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4039.1 -2.1 -2.4 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2011.1 -2.1 -2.5 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2711.1 -2.1 -1.7 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.5168.1 -2.0 -1.1 hypothetical protein compare
Xcc-8004.127.1 -2.0 -1.9 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1243.1 -2.0 -5.0 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.1790.1 -2.0 -2.9 Zinc uptake regulation protein ZUR compare
Xcc-8004.1097.1 -2.0 -4.2 FIG01210707: hypothetical protein compare
Xcc-8004.4371.1 -2.0 -4.0 rRNA small subunit methyltransferase I compare
Xcc-8004.2923.1 -2.0 -7.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.3979.1 -1.9 -7.6 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3855.1 -1.9 -6.9 FIG01209965: hypothetical protein compare
Xcc-8004.4256.1 -1.9 -2.7 Transcriptional regulator for ferulate or vanillate catabolism compare
Xcc-8004.5133.1 -1.8 -1.6 FIG01212313: hypothetical protein compare
Xcc-8004.3049.1 -1.8 -7.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1710.1 -1.8 -5.6 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2213.1 -1.8 -2.6 FIG01210598: hypothetical protein compare
Xcc-8004.4640.1 -1.7 -1.9 FIG01210726: hypothetical protein compare
Xcc-8004.3230.1 -1.7 -2.7 Phage DNA invertase compare
Xcc-8004.3783.1 -1.7 -5.9 Two-component system sensor protein compare
Xcc-8004.1228.1 -1.7 -5.3 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.3040.1 -1.7 -1.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.2449.1 -1.6 -3.5 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.3395.1 -1.6 -2.8 Transcriptional regulator, GntR family compare
Xcc-8004.1226.1 -1.6 -2.0 FIG01210021: hypothetical protein compare
Xcc-8004.165.1 -1.6 -1.1 hypothetical protein compare
Xcc-8004.1566.1 -1.6 -2.0 Putative activity regulator of membrane protease YbbK compare
Xcc-8004.1914.1 -1.6 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.4633.1 -1.5 -1.9 FIG01210488: hypothetical protein compare
Xcc-8004.4329.1 -1.5 -1.4 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.4046.1 -1.5 -6.7 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.2169.1 -1.5 -2.7 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.4102.1 -1.5 -1.5 FIG01211949: hypothetical protein compare
Xcc-8004.3431.1 -1.5 -1.8 DNA repair protein RecN compare
Xcc-8004.601.1 -1.5 -4.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.144.1 -1.5 -3.2 Putative protein-S-isoprenylcysteine methyltransferase compare
Xcc-8004.350.1 -1.5 -2.3 hypothetical protein compare
Xcc-8004.2228.1 -1.5 -4.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.318.1 -1.5 -4.4 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.4285.1 -1.5 -6.2 two-component system sensor protein compare
Xcc-8004.811.1 -1.5 -3.0 FIG01211260: hypothetical protein compare
Xcc-8004.4200.1 -1.4 -1.8 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.4810.1 -1.4 -6.4 hypothetical protein compare
Xcc-8004.1880.1 -1.4 -5.5 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.4373.1 -1.4 -2.0 LppC putative lipoprotein compare
Xcc-8004.4221.1 -1.4 -4.0 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.4954.1 -1.4 -4.4 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.1680.1 -1.4 -5.2 FIG006611: nucleotidyltransferase compare
Xcc-8004.337.1 -1.4 -2.7 ATPase, AFG1 family compare
Xcc-8004.494.1 -1.4 -4.3 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.4247.1 -1.4 -2.6 Transcriptional regulator, MarR family compare
Xcc-8004.4503.1 -1.3 -3.8 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.5239.1 -1.3 -3.1 Hexuronate transporter compare
Xcc-8004.4065.1 -1.3 -4.3 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.2659.1 -1.3 -2.1 FIG01212223: hypothetical protein compare
Xcc-8004.1027.1 -1.3 -1.4 Two-component system sensor protein compare
Xcc-8004.1138.1 -1.3 -2.6 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.787.1 -1.3 -0.9 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.5122.1 -1.3 -1.8 hypothetical protein compare
Xcc-8004.884.1 -1.3 -2.8 Rod shape-determining protein MreD compare
Xcc-8004.53.1 -1.3 -2.8 hypothetical protein compare
Xcc-8004.649.1 -1.3 -1.5 hypothetical protein compare
Xcc-8004.726.1 -1.3 -0.8 Putative preQ0 transporter compare
Xcc-8004.4743.1 -1.3 -3.6 Peptide deformylase (EC 3.5.1.88) compare
Xcc-8004.5224.1 -1.2 -1.7 bleomycin resistance protein compare
Xcc-8004.319.1 -1.2 -6.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.659.1 -1.2 -2.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1955.1 -1.2 -4.5 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.2930.1 -1.2 -1.8 hypothetical protein compare
Xcc-8004.500.1 -1.2 -1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.4558.1 -1.2 -1.9 ABC transporter permease compare
Xcc-8004.4526.1 -1.2 -4.2 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.2357.1 -1.2 -2.5 Segregation and condensation protein B compare
Xcc-8004.5335.1 -1.2 -1.6 FIG01214241: hypothetical protein compare
Xcc-8004.3733.1 -1.2 -1.8 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Xcc-8004.5363.1 -1.2 -1.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.4441.1 -1.1 -2.7 Tyrosine recombinase XerD compare
Xcc-8004.456.1 -1.1 -1.1 carbonic anhydrase, family 3 compare
Xcc-8004.1056.1 -1.1 -2.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.4000.1 -1.1 -1.8 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.4671.1 -1.1 -2.8 FIG01212254: hypothetical protein compare
Xcc-8004.4699.1 -1.1 -0.9 Flagellar motor protein compare
Xcc-8004.3889.1 -1.1 -2.4 FIG01210587: hypothetical protein compare
Xcc-8004.3803.1 -1.1 -1.1 hypothetical protein compare
Xcc-8004.4844.1 -1.1 -0.7 FIG01210764: hypothetical protein compare
Xcc-8004.705.1 -1.1 -1.1 hypothetical protein compare
Xcc-8004.366.1 -1.1 -2.8 hypothetical protein compare
Xcc-8004.3426.1 -1.0 -3.9 Chaperone protein DnaJ compare
Xcc-8004.2385.1 -1.0 -5.1 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.957.1 -1.0 -1.8 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.2229.1 -1.0 -4.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.5373.1 -1.0 -3.0 FIG01210567: hypothetical protein compare
Xcc-8004.1871.1 -1.0 -2.5 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.3321.1 -1.0 -1.3 FIG01209847: hypothetical protein compare
Xcc-8004.4739.1 -1.0 -2.7 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.3948.1 -1.0 -2.6 FIG01211207: hypothetical protein compare
Xcc-8004.244.1 -1.0 -2.0 FIG01209881: hypothetical protein compare
Xcc-8004.1909.1 -1.0 -2.1 FIG01212339: hypothetical protein compare
Xcc-8004.4442.1 -1.0 -1.9 FIG01212138: hypothetical protein compare
Xcc-8004.2337.1 -1.0 -3.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.171.1 -1.0 -0.8 hypothetical protein compare
Xcc-8004.3882.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.5114.1 -1.0 -3.1 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.4339.1 -1.0 -2.0 FIG01211792: hypothetical protein compare
Xcc-8004.4313.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.2559.1 -1.0 -1.9 hypothetical protein compare
Xcc-8004.4976.1 -1.0 -5.1 hypothetical protein compare
Xcc-8004.1134.1 -1.0 -3.4 Protein sirB1 compare
Xcc-8004.3310.1 -0.9 -2.6 Chromosome partition protein smc compare
Xcc-8004.4908.1 -0.9 -1.4 hypothetical protein compare
Xcc-8004.1630.1 -0.9 -2.3 hypothetical protein compare
Xcc-8004.4945.1 -0.9 -0.6 FIG01210349: hypothetical protein compare
Xcc-8004.2569.1 -0.9 -1.6 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.718.1 -0.9 -0.7 hypothetical protein compare
Xcc-8004.438.1 -0.9 -2.9 hypothetical protein compare
Xcc-8004.2230.1 -0.9 -2.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.3281.1 -0.9 -3.9 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4848.1 -0.9 -5.0 Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) compare
Xcc-8004.3726.1 -0.9 -0.9 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.4514.1 -0.9 -5.5 Glycosyltransferase compare
Xcc-8004.950.1 -0.9 -0.9 General secretion pathway protein L compare
Xcc-8004.2936.1 -0.9 -5.8 Amino acid transporters compare
Xcc-8004.3442.1 -0.9 -1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4491.1 -0.9 -3.4 Glycosyltransferase compare
Xcc-8004.4942.1 -0.9 -4.3 Two-component system regulatory protein compare
Xcc-8004.1788.1 -0.9 -2.9 FIG01210179: hypothetical protein compare
Xcc-8004.1224.1 -0.9 -2.9 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Xcc-8004.5051.1 -0.9 -2.1 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Xcc-8004.1166.1 -0.9 -2.7 FIG01210744: hypothetical protein compare
Xcc-8004.4306.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.721.1 -0.9 -2.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3676.1 -0.9 -1.3 Translation elongation factor LepA compare
Xcc-8004.4801.1 -0.9 -3.0 FIG01211532: hypothetical protein compare
Xcc-8004.1727.1 -0.9 -1.0 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.3721.1 -0.9 -0.9 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.2565.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.1576.1 -0.8 -2.7 FIG01211374: hypothetical protein compare
Xcc-8004.667.1 -0.8 -2.1 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.3809.1 -0.8 -1.9 HrpG protein compare
Xcc-8004.271.1 -0.8 -1.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.2644.1 -0.8 -1.3 hypothetical protein compare
Xcc-8004.4890.1 -0.8 -6.1 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.3322.1 -0.8 -1.0 FIG01211446: hypothetical protein compare
Xcc-8004.997.1 -0.8 -1.1 Possible GRAM domain compare
Xcc-8004.4493.1 -0.8 -2.0 sugar translocase compare
Xcc-8004.2713.1 -0.8 -0.7 Nitrate/nitrite transporter compare
Xcc-8004.5135.1 -0.8 -2.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.2384.1 -0.8 -5.5 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.2910.1 -0.8 -2.7 Regulatory protein, RpfE type compare
Xcc-8004.4018.1 -0.8 -3.0 Molybdenum cofactor biosynthesis protein MoaE compare
Xcc-8004.3087.1 -0.8 -1.6 FIG01211583: hypothetical protein compare
Xcc-8004.315.1 -0.8 -1.5 FIG01211941: hypothetical protein compare
Xcc-8004.1601.1 -0.8 -2.6 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.3556.1 -0.8 -1.9 FIG01213161: hypothetical protein compare
Xcc-8004.778.1 -0.8 -1.1 FIG01214273: hypothetical protein compare
Xcc-8004.241.1 -0.8 -2.5 hypothetical protein compare
Xcc-8004.4275.1 -0.8 -2.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.740.1 -0.8 -1.6 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.951.1 -0.8 -1.0 General secretion pathway protein M compare
Xcc-8004.3206.1 -0.8 -2.4 Acyl-CoA dehydrogenase/oxidase domain protein compare
Xcc-8004.3812.1 -0.8 -1.8 DNA repair protein RadA compare
Xcc-8004.665.1 -0.8 -2.9 FIG01211711: hypothetical protein compare
Xcc-8004.178.1 -0.8 -0.7 hypothetical protein compare
Xcc-8004.1809.1 -0.8 -1.0 extracellular serine protease compare
Xcc-8004.3346.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.4191.1 -0.8 -3.2 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.1437.1 -0.8 -2.8 Kup system potassium uptake protein compare
Xcc-8004.3968.1 -0.8 -1.7 Mobile element protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments