Experiment set7IT082 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3041.1 -5.3 -3.7 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.1660.1 -4.4 -1.4 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.2921.1 -4.1 -2.8 ferrous iron transport protein compare
Xcc-8004.5368.1 -3.5 -4.0 FIG01210868: hypothetical protein compare
Xcc-8004.623.1 -3.2 -2.2 Phosphoserine phosphatase compare
Xcc-8004.3752.1 -3.1 -2.4 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1651.1 -3.1 -8.0 putative Cytochrome bd2, subunit I compare
Xcc-8004.1790.1 -3.1 -3.4 Zinc uptake regulation protein ZUR compare
Xcc-8004.4620.1 -3.0 -8.0 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3976.1 -3.0 -4.6 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2922.1 -2.9 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.2334.1 -2.7 -6.5 Transport ATP-binding protein CydD compare
Xcc-8004.589.1 -2.6 -2.8 hypothetical protein compare
Xcc-8004.2182.1 -2.6 -11.9 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2920.1 -2.5 -10.1 Ferrous iron transport protein B compare
Xcc-8004.2335.1 -2.5 -6.0 Transport ATP-binding protein CydC compare
Xcc-8004.4329.1 -2.5 -1.9 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.2217.1 -2.5 -3.4 FIG01209779: hypothetical protein compare
Xcc-8004.1652.1 -2.5 -8.9 putative Cytochrome bd2, subunit II compare
Xcc-8004.1727.1 -2.5 -3.1 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.5185.1 -2.4 -2.5 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.3576.1 -2.4 -8.0 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1372.1 -2.4 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.3721.1 -2.3 -2.3 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.574.1 -2.3 -7.9 Di-/tripeptide transporter compare
Xcc-8004.2923.1 -2.2 -8.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.1243.1 -2.2 -7.1 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.5202.1 -2.2 -5.0 Twin-arginine translocation protein TatC compare
Xcc-8004.3979.1 -2.1 -6.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.337.1 -2.0 -3.1 ATPase, AFG1 family compare
Xcc-8004.3346.1 -2.0 -3.0 hypothetical protein compare
Xcc-8004.2011.1 -1.9 -2.3 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.1359.1 -1.9 -5.3 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3612.1 -1.9 -1.4 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.130.1 -1.9 -5.9 hypothetical protein compare
Xcc-8004.5343.1 -1.8 -6.6 hypothetical protein compare
Xcc-8004.797.1 -1.8 -1.4 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.4672.1 -1.8 -3.3 hypothetical protein compare
Xcc-8004.3310.1 -1.8 -3.9 Chromosome partition protein smc compare
Xcc-8004.5133.1 -1.7 -1.5 FIG01212313: hypothetical protein compare
Xcc-8004.4699.1 -1.7 -1.3 Flagellar motor protein compare
Xcc-8004.2652.1 -1.7 -2.2 response regulator compare
Xcc-8004.4732.1 -1.6 -1.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1241.1 -1.6 -3.9 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4596.1 -1.6 -7.3 hypothetical protein compare
Xcc-8004.1880.1 -1.6 -7.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.401.1 -1.6 -2.3 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.3855.1 -1.6 -5.4 FIG01209965: hypothetical protein compare
Xcc-8004.1365.1 -1.6 -1.2 FIG01211058: hypothetical protein compare
Xcc-8004.319.1 -1.6 -8.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.1677.1 -1.5 -3.9 FIG01209993: hypothetical protein compare
Xcc-8004.3040.1 -1.5 -2.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.4039.1 -1.5 -2.6 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1763.1 -1.5 -1.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1158.1 -1.5 -1.6 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Xcc-8004.1138.1 -1.5 -3.7 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.5189.1 -1.5 -1.8 FIG01212821: hypothetical protein compare
Xcc-8004.787.1 -1.5 -1.0 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.4446.1 -1.4 -4.7 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.3222.1 -1.4 -1.4 Mobile element protein compare
Xcc-8004.2358.1 -1.4 -6.1 Segregation and condensation protein A compare
Xcc-8004.957.1 -1.4 -2.9 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.4954.1 -1.4 -7.3 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.738.1 -1.4 -1.7 Malonate decarboxylase gamma subunit compare
Xcc-8004.2910.1 -1.4 -3.1 Regulatory protein, RpfE type compare
Xcc-8004.461.1 -1.4 -2.8 Transcriptional regulator, MarR family compare
Xcc-8004.318.1 -1.3 -4.6 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.3647.1 -1.3 -2.9 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.3426.1 -1.3 -4.8 Chaperone protein DnaJ compare
Xcc-8004.5365.1 -1.3 -5.9 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.1236.1 -1.3 -3.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.471.1 -1.3 -3.8 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.4339.1 -1.3 -1.9 FIG01211792: hypothetical protein compare
Xcc-8004.1436.1 -1.3 -1.5 Holliday junction DNA helicase RuvA compare
Xcc-8004.4810.1 -1.3 -5.6 hypothetical protein compare
Xcc-8004.585.1 -1.3 -1.2 Na(+) H(+) antiporter subunit F compare
Xcc-8004.3783.1 -1.3 -5.6 Two-component system sensor protein compare
Xcc-8004.2569.1 -1.3 -1.7 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.3321.1 -1.3 -1.5 FIG01209847: hypothetical protein compare
Xcc-8004.1764.1 -1.3 -3.7 FIG01209971: hypothetical protein compare
Xcc-8004.5367.1 -1.3 -5.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.3686.1 -1.3 -4.7 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.1955.1 -1.2 -4.5 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1959.1 -1.2 -1.2 hypothetical protein compare
Xcc-8004.2228.1 -1.2 -3.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.4046.1 -1.2 -5.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3723.1 -1.2 -1.2 hypothetical protein compare
Xcc-8004.4024.1 -1.2 -5.0 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.2229.1 -1.2 -6.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.1437.1 -1.2 -4.0 Kup system potassium uptake protein compare
Xcc-8004.99.1 -1.2 -1.7 FIG01211055: hypothetical protein compare
Xcc-8004.3322.1 -1.2 -1.2 FIG01211446: hypothetical protein compare
Xcc-8004.3792.1 -1.2 -1.0 Mobile element protein compare
Xcc-8004.127.1 -1.2 -1.4 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3955.1 -1.2 -3.3 HflK protein compare
Xcc-8004.4285.1 -1.2 -5.0 two-component system sensor protein compare
Xcc-8004.494.1 -1.2 -4.3 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.2924.1 -1.2 -3.1 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3211.1 -1.1 -1.9 protein of unknown function DUF88 compare
Xcc-8004.4221.1 -1.1 -3.5 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.5324.1 -1.1 -2.3 Mobile element protein compare
Xcc-8004.1228.1 -1.1 -4.3 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.3376.1 -1.1 -2.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.1768.1 -1.1 -1.3 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.4640.1 -1.1 -1.3 FIG01210726: hypothetical protein compare
Xcc-8004.4013.1 -1.1 -1.8 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.2230.1 -1.1 -2.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.1616.1 -1.1 -0.9 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.1776.1 -1.1 -2.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.4976.1 -1.0 -7.3 hypothetical protein compare
Xcc-8004.2259.1 -1.0 -3.3 PhbF compare
Xcc-8004.459.1 -1.0 -1.4 4-hydroxybenzoate transporter compare
Xcc-8004.321.1 -1.0 -6.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.645.1 -1.0 -1.1 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.1567.1 -1.0 -3.0 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.1205.1 -1.0 -2.2 hypothetical protein compare
Xcc-8004.741.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.876.1 -1.0 -1.0 Mobile element protein compare
Xcc-8004.892.1 -1.0 -2.1 Coupling protein VirD4, ATPase required for T-DNA transfer compare
Xcc-8004.3231.1 -1.0 -2.1 hypothetical protein compare
Xcc-8004.5166.1 -1.0 -2.4 hypothetical protein compare
Xcc-8004.601.1 -1.0 -3.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4112.1 -1.0 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.5302.1 -1.0 -2.4 FIG039767: hypothetical protein compare
Xcc-8004.4102.1 -1.0 -1.1 FIG01211949: hypothetical protein compare
Xcc-8004.2935.1 -1.0 -7.3 Amino acid transporters compare
Xcc-8004.357.1 -1.0 -2.0 FIG01210225: hypothetical protein compare
Xcc-8004.983.1 -1.0 -1.7 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.3794.1 -1.0 -1.3 Mobile element protein compare
Xcc-8004.3690.1 -1.0 -5.8 Transcriptional regulator, XRE family protein compare
Xcc-8004.576.1 -1.0 -2.0 FIG01210281: hypothetical protein compare
Xcc-8004.2324.1 -0.9 -2.8 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Xcc-8004.4306.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.4953.1 -0.9 -4.4 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Xcc-8004.5280.1 -0.9 -1.9 hypothetical protein compare
Xcc-8004.5346.1 -0.9 -2.8 hypothetical protein compare
Xcc-8004.4526.1 -0.9 -4.9 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.1196.1 -0.9 -3.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.4200.1 -0.9 -1.1 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.2346.1 -0.9 -1.3 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.3689.1 -0.9 -4.4 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Xcc-8004.1601.1 -0.9 -3.3 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.109.1 -0.9 -5.9 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.1048.1 -0.9 -1.5 Transcriptional regulator lysR family compare
Xcc-8004.472.1 -0.9 -2.7 Glycerol-3-phosphate regulon repressor, DeoR family compare
Xcc-8004.3281.1 -0.9 -3.5 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.280.1 -0.9 -2.9 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.1434.1 -0.9 -1.2 FIG000859: hypothetical protein YebC compare
Xcc-8004.2449.1 -0.9 -2.7 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.4848.1 -0.9 -5.4 Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) compare
Xcc-8004.3014.1 -0.9 -1.9 putative ATPase, AAA+ family protein compare
Xcc-8004.4533.1 -0.9 -2.3 TfoX C-terminal domain superfamily compare
Xcc-8004.1900.1 -0.9 -1.8 Acyl-CoA thioester hydrolase compare
Xcc-8004.482.1 -0.9 -1.2 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Xcc-8004.1204.1 -0.8 -1.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.3715.1 -0.8 -1.3 FIG01212258: hypothetical protein compare
Xcc-8004.878.1 -0.8 -3.7 Sugar kinase compare
Xcc-8004.3685.1 -0.8 -1.6 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Xcc-8004.195.1 -0.8 -0.7 phosphoesterase, putative compare
Xcc-8004.1710.1 -0.8 -2.8 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.3688.1 -0.8 -4.2 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
Xcc-8004.1226.1 -0.8 -1.2 FIG01210021: hypothetical protein compare
Xcc-8004.2266.1 -0.8 -1.0 FIG01211351: hypothetical protein compare
Xcc-8004.397.1 -0.8 -2.4 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.1266.1 -0.8 -1.3 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.629.1 -0.8 -2.0 hypothetical protein compare
Xcc-8004.3798.1 -0.8 -1.7 Anti-sigma B factor RsbT compare
Xcc-8004.854.1 -0.8 -1.8 Cytosine deaminase (EC 3.5.4.1) compare
Xcc-8004.4250.1 -0.8 -1.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.117.1 -0.8 -1.6 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.1409.1 -0.8 -1.3 Cation:proton antiporter compare
Xcc-8004.5366.1 -0.8 -5.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.3944.1 -0.8 -3.3 FIG01210716: hypothetical protein compare
Xcc-8004.2356.1 -0.8 -1.8 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.4820.1 -0.8 -0.9 FIG01211334: hypothetical protein compare
Xcc-8004.197.1 -0.8 -3.1 rhamnogalacturonan acetylesterase compare
Xcc-8004.251.1 -0.8 -2.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Xcc-8004.336.1 -0.8 -2.8 Alpha/beta hydrolase compare
Xcc-8004.3154.1 -0.8 -1.5 Probable low-affinity inorganic phosphate transporter compare
Xcc-8004.3882.1 -0.8 -1.7 hypothetical protein compare
Xcc-8004.1416.1 -0.8 -1.6 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.4275.1 -0.8 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.4465.1 -0.8 -2.9 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.1788.1 -0.8 -2.3 FIG01210179: hypothetical protein compare
Xcc-8004.3385.1 -0.8 -1.5 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.5125.1 -0.8 -2.2 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.2838.1 -0.8 -2.2 FIG01212239: hypothetical protein compare
Xcc-8004.745.1 -0.8 -1.5 VirP protein compare
Xcc-8004.3875.1 -0.8 -0.5 FIG01212144: hypothetical protein compare
Xcc-8004.3731.1 -0.8 -0.9 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.2383.1 -0.7 -1.8 FIG01211288: hypothetical protein compare
Xcc-8004.950.1 -0.7 -0.7 General secretion pathway protein L compare
Xcc-8004.2169.1 -0.7 -0.9 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.410.1 -0.7 -0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.565.1 -0.7 -2.4 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.785.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.2372.1 -0.7 -3.2 Pheromone shutdown protein compare
Xcc-8004.4698.1 -0.7 -1.9 Methyl-accepting chemotaxis protein compare
Xcc-8004.5046.1 -0.7 -1.8 Phenol hydroxylase compare
Xcc-8004.5108.1 -0.7 -1.9 Uncharacterized protein ImpA compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments