Experiment set7IT081 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.1727.1 -4.8 -3.3 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1660.1 -4.2 -1.2 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.4844.1 -4.0 -1.1 FIG01210764: hypothetical protein compare
Xcc-8004.1007.1 -3.7 -1.5 acetylxylan esterase compare
Xcc-8004.4806.1 -3.5 -2.3 FIG01211609: hypothetical protein compare
Xcc-8004.3054.1 -3.3 -1.8 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.5253.1 -3.1 -1.2 hypothetical protein compare
Xcc-8004.4510.1 -3.0 -1.8 ATP binding component of ABC-transporter compare
Xcc-8004.4526.1 -2.9 -9.3 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.3728.1 -2.7 -1.9 hypothetical protein compare
Xcc-8004.623.1 -2.7 -1.9 Phosphoserine phosphatase compare
Xcc-8004.1652.1 -2.7 -7.2 putative Cytochrome bd2, subunit II compare
Xcc-8004.4373.1 -2.7 -3.7 LppC putative lipoprotein compare
Xcc-8004.3676.1 -2.7 -2.6 Translation elongation factor LepA compare
Xcc-8004.5168.1 -2.6 -1.0 hypothetical protein compare
Xcc-8004.5203.1 -2.6 -2.0 Twin-arginine translocation protein TatB compare
Xcc-8004.3346.1 -2.6 -1.8 hypothetical protein compare
Xcc-8004.4529.1 -2.6 -1.3 FIG01210979: hypothetical protein compare
Xcc-8004.1436.1 -2.5 -1.7 Holliday junction DNA helicase RuvA compare
Xcc-8004.2334.1 -2.5 -6.8 Transport ATP-binding protein CydD compare
Xcc-8004.1615.1 -2.5 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.2923.1 -2.5 -9.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.2921.1 -2.5 -3.3 ferrous iron transport protein compare
Xcc-8004.2213.1 -2.4 -3.1 FIG01210598: hypothetical protein compare
Xcc-8004.3976.1 -2.3 -4.3 2-methylaconitate cis-trans isomerase compare
Xcc-8004.5317.1 -2.3 -1.6 FIG01210332: hypothetical protein compare
Xcc-8004.1162.1 -2.2 -2.7 FIG01210644: hypothetical protein compare
Xcc-8004.2335.1 -2.2 -4.9 Transport ATP-binding protein CydC compare
Xcc-8004.2217.1 -2.2 -3.0 FIG01209779: hypothetical protein compare
Xcc-8004.3041.1 -2.2 -2.6 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.4839.1 -2.1 -4.3 FIG01211359: hypothetical protein compare
Xcc-8004.3979.1 -2.1 -8.0 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3479.1 -2.1 -1.8 aklaviketone reductase compare
Xcc-8004.5280.1 -2.1 -3.0 hypothetical protein compare
Xcc-8004.2614.1 -2.1 -2.5 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.337.1 -2.1 -2.9 ATPase, AFG1 family compare
Xcc-8004.3783.1 -2.1 -6.6 Two-component system sensor protein compare
Xcc-8004.2652.1 -2.1 -2.5 response regulator compare
Xcc-8004.4620.1 -2.1 -6.2 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2182.1 -2.1 -11.0 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.94.1 -2.0 -1.0 Transcriptional regulator, LuxR family compare
Xcc-8004.4465.1 -2.0 -5.7 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.3222.1 -2.0 -1.8 Mobile element protein compare
Xcc-8004.4102.1 -2.0 -1.9 FIG01211949: hypothetical protein compare
Xcc-8004.5302.1 -1.9 -3.9 FIG039767: hypothetical protein compare
Xcc-8004.3752.1 -1.9 -1.5 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.4699.1 -1.9 -1.2 Flagellar motor protein compare
Xcc-8004.1236.1 -1.9 -4.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4233.1 -1.9 -1.5 two-component system sensor protein compare
Xcc-8004.3726.1 -1.9 -1.9 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.4046.1 -1.9 -8.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4248.1 -1.9 -3.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.2920.1 -1.9 -6.8 Ferrous iron transport protein B compare
Xcc-8004.713.1 -1.9 -0.9 FIG01210186: hypothetical protein compare
Xcc-8004.234.1 -1.8 -8.4 cardiolipin synthase compare
Xcc-8004.1137.1 -1.8 -1.2 FIG006231: RNA-binding protein compare
Xcc-8004.589.1 -1.8 -1.8 hypothetical protein compare
Xcc-8004.1359.1 -1.8 -5.2 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.2357.1 -1.8 -3.2 Segregation and condensation protein B compare
Xcc-8004.4306.1 -1.8 -1.6 hypothetical protein compare
Xcc-8004.4810.1 -1.7 -6.6 hypothetical protein compare
Xcc-8004.1502.1 -1.7 -1.8 twitching motility protein PilG compare
Xcc-8004.4596.1 -1.7 -6.2 hypothetical protein compare
Xcc-8004.3754.1 -1.7 -1.9 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.3365.1 -1.7 -3.3 FIG01209831: hypothetical protein compare
Xcc-8004.1135.1 -1.6 -2.3 FIG01210448: hypothetical protein compare
Xcc-8004.3473.1 -1.6 -1.4 FIG01213437: hypothetical protein compare
Xcc-8004.2168.1 -1.6 -3.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3103.1 -1.6 -1.5 hypothetical protein compare
Xcc-8004.1208.1 -1.6 -3.7 Glucarate dehydratase (EC 4.2.1.40) compare
Xcc-8004.1241.1 -1.6 -3.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.2228.1 -1.6 -4.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.5343.1 -1.6 -5.0 hypothetical protein compare
Xcc-8004.3310.1 -1.6 -3.6 Chromosome partition protein smc compare
Xcc-8004.1164.1 -1.6 -2.8 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.130.1 -1.6 -5.0 hypothetical protein compare
Xcc-8004.4430.1 -1.6 -1.0 General secretion pathway protein G compare
Xcc-8004.4441.1 -1.5 -2.8 Tyrosine recombinase XerD compare
Xcc-8004.4231.1 -1.5 -0.9 two-component system regulatory protein compare
Xcc-8004.1651.1 -1.5 -4.4 putative Cytochrome bd2, subunit I compare
Xcc-8004.736.1 -1.5 -2.3 hypothetical protein compare
Xcc-8004.1619.1 -1.5 -1.6 PspA/IM30 family protein compare
Xcc-8004.3329.1 -1.5 -2.9 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Xcc-8004.1720.1 -1.5 -2.4 UPF0301 protein YqgE compare
Xcc-8004.1372.1 -1.5 -1.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1677.1 -1.5 -3.4 FIG01209993: hypothetical protein compare
Xcc-8004.1772.1 -1.5 -1.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.5368.1 -1.5 -2.2 FIG01210868: hypothetical protein compare
Xcc-8004.1616.1 -1.5 -1.2 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.5324.1 -1.5 -1.6 Mobile element protein compare
Xcc-8004.127.1 -1.5 -1.4 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.2561.1 -1.5 -5.9 FIG01213638: hypothetical protein compare
Xcc-8004.1914.1 -1.5 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.3322.1 -1.5 -1.3 FIG01211446: hypothetical protein compare
Xcc-8004.3049.1 -1.5 -6.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.718.1 -1.5 -0.8 hypothetical protein compare
Xcc-8004.1058.1 -1.4 -2.4 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.574.1 -1.4 -5.3 Di-/tripeptide transporter compare
Xcc-8004.5326.1 -1.4 -1.1 Mobile element protein compare
Xcc-8004.4069.1 -1.4 -2.9 FIG01211525: hypothetical protein compare
Xcc-8004.4477.1 -1.4 -1.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.4339.1 -1.4 -2.0 FIG01211792: hypothetical protein compare
Xcc-8004.3165.1 -1.4 -2.4 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.1809.1 -1.4 -1.4 extracellular serine protease compare
Xcc-8004.1955.1 -1.4 -5.0 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.3968.1 -1.4 -2.7 Mobile element protein compare
Xcc-8004.109.1 -1.4 -7.3 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.2319.1 -1.4 -3.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.461.1 -1.4 -1.8 Transcriptional regulator, MarR family compare
Xcc-8004.1374.1 -1.4 -1.3 Lipoprotein, putative compare
Xcc-8004.2337.1 -1.3 -3.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.3108.1 -1.3 -2.0 Regulatory protein RecX compare
Xcc-8004.1226.1 -1.3 -1.4 FIG01210021: hypothetical protein compare
Xcc-8004.1244.1 -1.3 -4.3 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.689.1 -1.3 -1.3 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.3721.1 -1.3 -1.4 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.4671.1 -1.3 -2.5 FIG01212254: hypothetical protein compare
Xcc-8004.5098.1 -1.3 -1.3 hypothetical protein compare
Xcc-8004.80.1 -1.3 -1.4 hypothetical protein compare
Xcc-8004.3812.1 -1.3 -2.0 DNA repair protein RadA compare
Xcc-8004.3040.1 -1.3 -2.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.318.1 -1.3 -4.6 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.2842.1 -1.2 -1.1 FIG01212239: hypothetical protein compare
Xcc-8004.3655.1 -1.2 -1.1 FIG01210025: hypothetical protein compare
Xcc-8004.944.1 -1.2 -2.1 General secretion pathway protein F compare
Xcc-8004.244.1 -1.2 -2.2 FIG01209881: hypothetical protein compare
Xcc-8004.3903.1 -1.2 -1.5 Mlr6856 protein compare
Xcc-8004.4049.1 -1.2 -3.0 Cell division trigger factor (EC 5.2.1.8) compare
Xcc-8004.852.1 -1.2 -3.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Xcc-8004.1505.1 -1.2 -3.1 pilus biogenesis protein compare
Xcc-8004.4013.1 -1.2 -1.5 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.1576.1 -1.2 -3.4 FIG01211374: hypothetical protein compare
Xcc-8004.3660.1 -1.2 -2.9 Cold shock protein CspD compare
Xcc-8004.3492.1 -1.2 -0.9 FIG01211425: hypothetical protein compare
Xcc-8004.2705.1 -1.2 -2.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.787.1 -1.2 -0.7 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.659.1 -1.2 -2.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3731.1 -1.2 -1.4 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.494.1 -1.2 -3.3 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.3130.1 -1.2 -5.0 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.319.1 -1.2 -5.7 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.3905.1 -1.2 -1.8 Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT compare
Xcc-8004.5133.1 -1.2 -1.0 FIG01212313: hypothetical protein compare
Xcc-8004.4945.1 -1.1 -0.6 FIG01210349: hypothetical protein compare
Xcc-8004.4004.1 -1.1 -3.1 FIG01211850: hypothetical protein compare
Xcc-8004.4428.1 -1.1 -1.7 General secretion pathway protein I compare
Xcc-8004.998.1 -1.1 -0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1710.1 -1.1 -2.9 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.5138.1 -1.1 -3.2 transglycosylase associated protein compare
Xcc-8004.4065.1 -1.1 -3.3 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.1243.1 -1.1 -2.9 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.1890.1 -1.1 -3.0 hypothetical protein compare
Xcc-8004.1339.1 -1.1 -2.6 FIG01213809: hypothetical protein compare
Xcc-8004.5202.1 -1.1 -2.1 Twin-arginine translocation protein TatC compare
Xcc-8004.2848.1 -1.1 -2.6 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Xcc-8004.3133.1 -1.1 -3.0 ortholog of Bordetella pertussis (BX470248) BP2475 compare
Xcc-8004.1064.1 -1.1 -1.7 hypothetical protein compare
Xcc-8004.792.1 -1.1 -2.8 FIG01211403: hypothetical protein compare
Xcc-8004.629.1 -1.1 -2.1 hypothetical protein compare
Xcc-8004.1158.1 -1.1 -1.2 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Xcc-8004.4735.1 -1.1 -3.4 FIG01210211: hypothetical protein compare
Xcc-8004.4824.1 -1.1 -4.2 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2169.1 -1.1 -1.4 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1134.1 -1.1 -2.9 Protein sirB1 compare
Xcc-8004.2569.1 -1.1 -1.4 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.3855.1 -1.0 -3.4 FIG01209965: hypothetical protein compare
Xcc-8004.3710.1 -1.0 -0.9 hypothetical protein compare
Xcc-8004.432.1 -1.0 -0.9 hypothetical protein compare
Xcc-8004.983.1 -1.0 -1.5 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.4631.1 -1.0 -2.7 hypothetical protein compare
Xcc-8004.4329.1 -1.0 -0.8 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.2339.1 -1.0 -0.9 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.1466.1 -1.0 -1.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.5380.1 -1.0 -3.0 FIG01212194: hypothetical protein compare
Xcc-8004.1138.1 -1.0 -2.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.2922.1 -1.0 -1.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1696.1 -1.0 -0.7 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.3898.1 -1.0 -0.6 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.1328.1 -1.0 -1.3 FIG01210090: hypothetical protein compare
Xcc-8004.2618.1 -1.0 -1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Xcc-8004.4375.1 -1.0 -1.9 Putative membrane-bound metal-dependent hydrolases compare
Xcc-8004.4168.1 -1.0 -2.1 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.3292.1 -1.0 -1.9 FIG01210333: hypothetical protein compare
Xcc-8004.4313.1 -1.0 -1.3 hypothetical protein compare
Xcc-8004.1488.1 -1.0 -2.3 Coenzyme PQQ synthesis protein B compare
Xcc-8004.4340.1 -1.0 -2.1 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Xcc-8004.1196.1 -1.0 -2.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.4777.1 -1.0 -5.0 ATP-dependent RNA helicase RhlB compare
Xcc-8004.4092.1 -1.0 -3.8 FIG01209901: hypothetical protein compare
Xcc-8004.601.1 -1.0 -2.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.2229.1 -1.0 -4.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.812.1 -1.0 -1.6 histidine kinase-response regulator hybrid protein compare
Xcc-8004.585.1 -1.0 -1.2 Na(+) H(+) antiporter subunit F compare
Xcc-8004.4862.1 -1.0 -2.4 Phage-related baseplate assembly protein compare
Xcc-8004.3954.1 -1.0 -2.4 HflC protein compare
Xcc-8004.1522.1 -1.0 -1.9 Putative predicted metal-dependent hydrolase compare
Xcc-8004.4848.1 -0.9 -4.9 Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) compare
Xcc-8004.4672.1 -0.9 -1.2 hypothetical protein compare
Xcc-8004.4523.1 -0.9 -2.2 Type II secretion system protein-like protein compare
Xcc-8004.2579.1 -0.9 -1.0 Transcriptional regulator in PFGI-1-like cluster compare


Specific Phenotypes

For 1 genes in this experiment