Experiment set7IT080 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2713.1 -5.1 -1.6 Nitrate/nitrite transporter compare
Xcc-8004.1839.1 -4.3 -1.9 FIG01210863: hypothetical protein compare
Xcc-8004.2921.1 -3.9 -2.7 ferrous iron transport protein compare
Xcc-8004.3721.1 -3.6 -2.7 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.3054.1 -3.6 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3041.1 -3.5 -4.7 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.2182.1 -3.2 -13.1 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2923.1 -3.0 -10.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.3726.1 -2.8 -2.5 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.3976.1 -2.7 -4.4 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2922.1 -2.7 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.130.1 -2.6 -7.7 hypothetical protein compare
Xcc-8004.1241.1 -2.6 -5.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4231.1 -2.5 -1.4 two-component system regulatory protein compare
Xcc-8004.4477.1 -2.4 -1.2 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.2110.1 -2.4 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4620.1 -2.3 -7.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1372.1 -2.3 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2614.1 -2.2 -2.5 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.1718.1 -2.1 -2.3 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.3923.1 -2.1 -1.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3703.1 -2.1 -2.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3230.1 -2.1 -2.7 Phage DNA invertase compare
Xcc-8004.3676.1 -2.0 -3.0 Translation elongation factor LepA compare
Xcc-8004.4200.1 -2.0 -2.3 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.5343.1 -2.0 -5.9 hypothetical protein compare
Xcc-8004.2924.1 -2.0 -4.7 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4768.1 -2.0 -2.5 FIG01210642: hypothetical protein compare
Xcc-8004.957.1 -1.9 -3.5 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1880.1 -1.9 -7.3 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.574.1 -1.9 -6.3 Di-/tripeptide transporter compare
Xcc-8004.4596.1 -1.9 -6.1 hypothetical protein compare
Xcc-8004.4810.1 -1.9 -6.7 hypothetical protein compare
Xcc-8004.1652.1 -1.9 -6.8 putative Cytochrome bd2, subunit II compare
Xcc-8004.2346.1 -1.9 -2.4 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.2920.1 -1.9 -7.2 Ferrous iron transport protein B compare
Xcc-8004.1809.1 -1.8 -1.7 extracellular serine protease compare
Xcc-8004.3049.1 -1.8 -6.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.2259.1 -1.8 -4.7 PhbF compare
Xcc-8004.3576.1 -1.8 -6.2 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.2529.1 -1.8 -2.6 FIG01210734: hypothetical protein compare
Xcc-8004.2569.1 -1.8 -1.6 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.3395.1 -1.8 -2.7 Transcriptional regulator, GntR family compare
Xcc-8004.1615.1 -1.8 -1.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.3647.1 -1.7 -4.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.385.1 -1.7 -2.2 FIG01212287: hypothetical protein compare
Xcc-8004.3759.1 -1.7 -2.6 hypothetical protein compare
Xcc-8004.4233.1 -1.7 -1.6 two-component system sensor protein compare
Xcc-8004.1727.1 -1.7 -2.1 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1205.1 -1.7 -2.5 hypothetical protein compare
Xcc-8004.1437.1 -1.7 -4.7 Kup system potassium uptake protein compare
Xcc-8004.1562.1 -1.7 -2.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.1955.1 -1.6 -5.4 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.3753.1 -1.6 -3.5 putative secreted protein compare
Xcc-8004.1228.1 -1.6 -5.2 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.3346.1 -1.6 -2.8 hypothetical protein compare
Xcc-8004.1244.1 -1.6 -5.9 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.1236.1 -1.6 -3.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.645.1 -1.6 -1.3 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.353.1 -1.6 -2.2 FIG01210121: hypothetical protein compare
Xcc-8004.3783.1 -1.6 -5.8 Two-component system sensor protein compare
Xcc-8004.2335.1 -1.6 -4.6 Transport ATP-binding protein CydC compare
Xcc-8004.1200.1 -1.5 -1.4 hypothetical protein compare
Xcc-8004.318.1 -1.5 -4.1 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.319.1 -1.5 -6.6 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.4285.1 -1.5 -6.2 two-component system sensor protein compare
Xcc-8004.4046.1 -1.5 -6.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4694.1 -1.4 -2.4 FIG01210824: hypothetical protein compare
Xcc-8004.3855.1 -1.4 -4.6 FIG01209965: hypothetical protein compare
Xcc-8004.837.1 -1.4 -1.4 FIG01210690: hypothetical protein compare
Xcc-8004.4065.1 -1.4 -4.1 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.337.1 -1.4 -2.6 ATPase, AFG1 family compare
Xcc-8004.3426.1 -1.4 -3.9 Chaperone protein DnaJ compare
Xcc-8004.1495.1 -1.4 -1.7 FIG01212489: hypothetical protein compare
Xcc-8004.118.1 -1.4 -3.3 FIG037995: Hypothetical protein compare
Xcc-8004.4024.1 -1.4 -4.4 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.1359.1 -1.4 -4.0 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3723.1 -1.4 -1.5 hypothetical protein compare
Xcc-8004.4039.1 -1.4 -1.5 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.713.1 -1.4 -0.8 FIG01210186: hypothetical protein compare
Xcc-8004.2334.1 -1.3 -2.9 Transport ATP-binding protein CydD compare
Xcc-8004.4292.1 -1.3 -1.4 Taurine transport ATP-binding protein TauB compare
Xcc-8004.1243.1 -1.3 -3.3 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.2652.1 -1.3 -2.3 response regulator compare
Xcc-8004.1504.1 -1.3 -1.4 type IV pili signal transduction protein PilI compare
Xcc-8004.3979.1 -1.3 -4.8 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.1841.1 -1.3 -2.6 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.321.1 -1.3 -6.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.601.1 -1.3 -4.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1790.1 -1.3 -2.2 Zinc uptake regulation protein ZUR compare
Xcc-8004.5082.1 -1.3 -2.4 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Xcc-8004.576.1 -1.3 -1.7 FIG01210281: hypothetical protein compare
Xcc-8004.4697.1 -1.2 -1.5 FIG01210654: hypothetical protein compare
Xcc-8004.2910.1 -1.2 -3.8 Regulatory protein, RpfE type compare
Xcc-8004.500.1 -1.2 -1.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.4698.1 -1.2 -2.3 Methyl-accepting chemotaxis protein compare
Xcc-8004.3310.1 -1.2 -2.6 Chromosome partition protein smc compare
Xcc-8004.565.1 -1.2 -2.7 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.1409.1 -1.2 -1.8 Cation:proton antiporter compare
Xcc-8004.787.1 -1.2 -0.8 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.990.1 -1.2 -2.8 FIG01210796: hypothetical protein compare
Xcc-8004.2383.1 -1.2 -2.3 FIG01211288: hypothetical protein compare
Xcc-8004.970.1 -1.2 -2.5 Probable cytochrome c2 compare
Xcc-8004.4672.1 -1.2 -1.7 hypothetical protein compare
Xcc-8004.2861.1 -1.2 -1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.715.1 -1.2 -2.1 RNA polymerase sigma factor compare
Xcc-8004.4954.1 -1.1 -4.4 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.3479.1 -1.1 -1.3 aklaviketone reductase compare
Xcc-8004.459.1 -1.1 -2.0 4-hydroxybenzoate transporter compare
Xcc-8004.1326.1 -1.1 -2.1 hypothetical protein compare
Xcc-8004.1871.1 -1.1 -2.8 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.4836.1 -1.1 -3.0 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1858.1 -1.1 -0.9 FIG01211170: hypothetical protein compare
Xcc-8004.3281.1 -1.1 -4.3 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.2228.1 -1.1 -3.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.4507.1 -1.1 -3.9 Glycosyltransferase compare
Xcc-8004.2867.1 -1.1 -1.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1064.1 -1.1 -1.4 hypothetical protein compare
Xcc-8004.740.1 -1.1 -2.4 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.5202.1 -1.1 -2.6 Twin-arginine translocation protein TatC compare
Xcc-8004.4503.1 -1.1 -3.7 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.3514.1 -1.1 -2.7 FIG01211598: hypothetical protein compare
Xcc-8004.2866.1 -1.1 -2.1 hypothetical protein compare
Xcc-8004.280.1 -1.1 -4.0 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.3688.1 -1.1 -5.3 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
Xcc-8004.4478.1 -1.1 -5.7 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Xcc-8004.4112.1 -1.1 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1619.1 -1.1 -1.4 PspA/IM30 family protein compare
Xcc-8004.2337.1 -1.1 -2.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.2194.1 -1.1 -2.1 Formate dehydrogenase chain D (EC 1.2.1.2) compare
Xcc-8004.623.1 -1.1 -1.1 Phosphoserine phosphatase compare
Xcc-8004.5252.1 -1.1 -4.0 FIG01210658: hypothetical protein compare
Xcc-8004.3040.1 -1.1 -1.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.1651.1 -1.1 -2.8 putative Cytochrome bd2, subunit I compare
Xcc-8004.4976.1 -1.0 -5.9 hypothetical protein compare
Xcc-8004.4653.1 -1.0 -6.3 amino acid transporter compare
Xcc-8004.1909.1 -1.0 -1.7 FIG01212339: hypothetical protein compare
Xcc-8004.4221.1 -1.0 -3.3 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.1488.1 -1.0 -2.0 Coenzyme PQQ synthesis protein B compare
Xcc-8004.1058.1 -1.0 -1.5 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.1906.1 -1.0 -1.8 lipoprotein compare
Xcc-8004.1710.1 -1.0 -2.3 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.410.1 -1.0 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2290.1 -1.0 -3.5 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Xcc-8004.3690.1 -1.0 -5.0 Transcriptional regulator, XRE family protein compare
Xcc-8004.4947.1 -1.0 -1.4 Histone H1 compare
Xcc-8004.1959.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.1052.1 -1.0 -2.4 hypothetical protein compare
Xcc-8004.659.1 -1.0 -1.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3211.1 -1.0 -1.5 protein of unknown function DUF88 compare
Xcc-8004.2326.1 -1.0 -1.9 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Xcc-8004.4844.1 -0.9 -0.6 FIG01210764: hypothetical protein compare
Xcc-8004.1890.1 -0.9 -2.8 hypothetical protein compare
Xcc-8004.3831.1 -0.9 -2.4 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) compare
Xcc-8004.1822.1 -0.9 -1.3 Transcriptional regulator, MarR family compare
Xcc-8004.1601.1 -0.9 -3.5 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.4239.1 -0.9 -3.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.571.1 -0.9 -4.9 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Xcc-8004.4294.1 -0.9 -1.9 membrane protein, putative compare
Xcc-8004.1000.1 -0.9 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3133.1 -0.9 -2.2 ortholog of Bordetella pertussis (BX470248) BP2475 compare
Xcc-8004.5140.1 -0.9 -1.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.589.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.4986.1 -0.9 -1.9 FIG01209754: hypothetical protein compare
Xcc-8004.2199.1 -0.9 -1.3 Hemerythrin-like protein PA1673 compare
Xcc-8004.3137.1 -0.9 -2.2 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Xcc-8004.1249.1 -0.9 -2.5 Transcriptional regulator compare
Xcc-8004.350.1 -0.9 -1.4 hypothetical protein compare
Xcc-8004.4517.1 -0.9 -4.8 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.3752.1 -0.9 -0.6 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1124.1 -0.9 -0.9 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.1680.1 -0.9 -3.3 FIG006611: nucleotidyltransferase compare
Xcc-8004.2055.1 -0.9 -1.0 Mobile element protein compare
Xcc-8004.1536.1 -0.9 -2.1 Virulence protein compare
Xcc-8004.494.1 -0.9 -2.6 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.5352.1 -0.9 -1.6 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.2935.1 -0.9 -5.9 Amino acid transporters compare
Xcc-8004.3196.1 -0.9 -3.2 response regulator compare
Xcc-8004.5239.1 -0.9 -1.9 Hexuronate transporter compare
Xcc-8004.855.1 -0.9 -1.6 ElaA protein compare
Xcc-8004.48.1 -0.9 -1.4 FIG01212903: hypothetical protein compare
Xcc-8004.3324.1 -0.9 -2.3 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.5365.1 -0.8 -3.0 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.1755.1 -0.8 -1.7 COG2879, Hypothetical small protein yjiX compare
Xcc-8004.3717.1 -0.8 -2.0 Hpa2 protein compare
Xcc-8004.3313.1 -0.8 -2.2 LSU ribosomal protein L9p compare
Xcc-8004.4963.1 -0.8 -2.8 Acriflavin resistance protein compare
Xcc-8004.1334.1 -0.8 -0.8 hypothetical protein compare
Xcc-8004.1873.1 -0.8 -1.6 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.315.1 -0.8 -1.5 FIG01211941: hypothetical protein compare
Xcc-8004.4275.1 -0.8 -2.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.5224.1 -0.8 -1.4 bleomycin resistance protein compare
Xcc-8004.3751.1 -0.8 -1.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4501.1 -0.8 -3.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.4391.1 -0.8 -2.2 hypothetical protein compare
Xcc-8004.864.1 -0.8 -2.0 hypothetical protein compare
Xcc-8004.4337.1 -0.8 -3.3 FIG01210643: hypothetical protein compare
Xcc-8004.2989.1 -0.8 -1.9 hypothetical protein compare
Xcc-8004.93.1 -0.8 -1.9 FIG01211857: hypothetical protein compare
Xcc-8004.1090.1 -0.8 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments