Experiment set7IT080 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_08085 -4.4 -4.3 helix-turn-helix domain-containing protein compare
IAI47_00760 -4.3 -6.1 envelope stress response regulator transcription factor CpxR compare
IAI47_09235 -4.3 -2.9 type I DNA topoisomerase compare
IAI47_09040 -4.0 -2.7 NAD-dependent epimerase compare
IAI47_05420 -4.0 -2.7 PTS glucose transporter subunit IIA compare
IAI47_08705 -4.0 -8.9 carboxy terminal-processing peptidase compare
IAI47_05070 -3.6 -1.5 outer membrane protein assembly factor BamB compare
IAI47_13685 -3.6 -3.2 Tol-Pal system protein TolB compare
IAI47_00300 -3.2 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_05090 -3.1 -5.8 hypothetical protein compare
IAI47_15970 -3.0 -3.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_17000 -2.6 -13.8 lipoprotein NlpI compare
IAI47_02090 -2.5 -5.3 elongation factor Tu compare
IAI47_00460 -2.5 -2.9 glutamate--ammonia ligase compare
IAI47_00780 -2.5 -5.2 6-phosphofructokinase compare
IAI47_10835 -2.3 -1.4 tRNA-Val compare
IAI47_08700 -2.3 -7.0 RNA chaperone ProQ compare
IAI47_17005 -2.3 -7.4 polyribonucleotide nucleotidyltransferase compare
IAI47_11375 -2.2 -2.3 hypothetical protein compare
IAI47_00465 -2.2 -3.0 ribosome-dependent GTPase TypA compare
IAI47_01780 -2.2 -3.6 Fe-S biogenesis protein NfuA compare
IAI47_05195 -2.2 -3.2 DnaA inactivator Hda compare
IAI47_15485 -2.2 -2.1 molecular chaperone Skp compare
IAI47_01475 -2.1 -10.4 MurR/RpiR family transcriptional regulator compare
IAI47_18400 -2.1 -2.8 tyrosine recombinase XerC compare
IAI47_04300 -2.0 -7.6 recombinase RecA compare
IAI47_11310 -2.0 -3.8 redox-regulated ATPase YchF compare
IAI47_16995 -2.0 -3.0 protein YrbN compare
IAI47_07350 -2.0 -1.2 hypothetical protein compare
IAI47_11360 -2.0 -3.6 hypothetical protein compare
IAI47_18830 -2.0 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_05035 -2.0 -3.2 nucleoside-diphosphate kinase compare
IAI47_03820 -2.0 -4.2 site-specific tyrosine recombinase XerD compare
IAI47_18215 -1.9 -2.6 Trk system potassium transporter TrkH compare
IAI47_10840 -1.9 -3.9 pyruvate kinase PykF compare
IAI47_05155 -1.9 -13.2 polyphosphate kinase 1 compare
IAI47_03375 -1.8 -9.4 peptide chain release factor 3 compare
IAI47_18480 -1.8 -9.7 lipid III flippase WzxE compare
IAI47_11515 -1.8 -2.1 hypothetical protein compare
IAI47_17020 -1.7 -3.9 30S ribosome-binding factor RbfA compare
IAI47_20595 -1.7 -4.8 GhoT/OrtT family toxin compare
IAI47_05520 -1.7 -1.5 tRNA-Ala compare
IAI47_09635 -1.7 -4.8 hypothetical protein compare
IAI47_12790 -1.6 -1.0 chromosome partition protein MukE compare
IAI47_12920 -1.6 -3.8 thioredoxin-disulfide reductase compare
IAI47_06565 -1.6 -2.6 YejL family protein compare
IAI47_12925 -1.6 -4.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_09360 -1.5 -1.4 peptide ABC transporter ATP-binding protein SapF compare
IAI47_00870 -1.5 -1.5 50S ribosomal protein L31 compare
IAI47_02585 -1.5 -4.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_09305 -1.5 -3.0 cyclic di-GMP phosphodiesterase compare
IAI47_09055 -1.5 -9.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_07475 -1.5 -0.9 hypothetical protein compare
IAI47_08165 -1.4 -5.9 flagella biosynthesis regulatory protein FliZ compare
IAI47_19945 -1.4 -1.0 hypothetical protein compare
IAI47_16085 -1.4 -1.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_18420 -1.4 -9.6 class I adenylate cyclase compare
IAI47_12885 -1.4 -7.0 pyruvate formate lyase 1-activating protein compare
IAI47_06655 -1.4 -3.9 1-phosphofructokinase compare
IAI47_17560 -1.4 -1.6 ROK family transcriptional regulator compare
IAI47_13050 -1.4 -4.0 YbjN domain-containing protein compare
IAI47_08440 -1.4 -1.8 crossover junction endodeoxyribonuclease RuvC compare
IAI47_19935 -1.4 -3.5 hypothetical protein compare
IAI47_21780 -1.3 -2.9 hypothetical protein compare
IAI47_04835 -1.3 -6.7 ATP-dependent RNA helicase SrmB compare
IAI47_11450 -1.3 -4.1 ankyrin repeat domain-containing protein compare
IAI47_02750 -1.3 -10.5 class 1 fructose-bisphosphatase compare
IAI47_09380 -1.3 -5.0 peptide ABC transporter substrate-binding protein SapA compare
IAI47_08305 -1.3 -5.4 chemotaxis protein CheW compare
IAI47_08450 -1.3 -2.6 Holliday junction branch migration DNA helicase RuvB compare
IAI47_16095 -1.3 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_13700 -1.3 -3.9 Tol-Pal system protein TolQ compare
IAI47_11655 -1.2 -2.5 hypothetical protein compare
IAI47_11415 -1.2 -1.2 hypothetical protein compare
IAI47_00655 -1.2 -2.7 glycosyltransferase family 4 protein compare
IAI47_11480 -1.2 -1.0 hypothetical protein compare
IAI47_10520 -1.2 -2.5 pyridoxamine 5'-phosphate oxidase compare
IAI47_00735 -1.2 -1.8 protein-export chaperone SecB compare
IAI47_03680 -1.2 -7.7 transketolase compare
IAI47_13740 -1.2 -1.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_01365 -1.2 -1.9 inorganic phosphate transporter PitA compare
IAI47_13720 -1.2 -3.7 cytochrome d ubiquinol oxidase subunit II compare
IAI47_18775 -1.2 -5.1 hypothetical protein compare
IAI47_12865 -1.2 -6.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_07180 -1.2 -5.1 DUF496 family protein compare
IAI47_02400 -1.2 -1.9 YhdT family protein compare
IAI47_06135 -1.1 -2.6 phosphohistidine phosphatase SixA compare
IAI47_09580 -1.1 -2.2 FNR family transcription factor compare
IAI47_21765 -1.1 -1.9 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_18490 -1.1 -5.0 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_06400 -1.1 -1.8 NADH-quinone oxidoreductase subunit J compare
IAI47_17235 -1.1 -7.4 stringent starvation protein A compare
IAI47_21595 -1.1 -6.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_11445 -1.1 -4.3 ankyrin repeat domain-containing protein compare
IAI47_00375 -1.1 -9.4 ribose operon transcriptional repressor RbsR compare
IAI47_15595 -1.1 -1.4 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_12275 -1.1 -8.2 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_13885 -1.1 -1.2 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_04400 -1.1 -4.1 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_17965 -1.0 -7.1 glucose-6-phosphate isomerase compare
IAI47_08680 -1.0 -4.0 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_15155 -1.0 -2.5 DUF943 family protein compare
IAI47_04870 -1.0 -4.0 elongation factor 4 compare
IAI47_12470 -1.0 -7.1 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_07025 -1.0 -3.4 glycosyltransferase family 4 protein compare
IAI47_17035 -1.0 -1.8 ribosome maturation factor RimP compare
IAI47_10555 -1.0 -2.2 hypothetical protein compare
IAI47_09400 -1.0 -2.6 envelope stress response membrane protein PspB compare
IAI47_07030 -1.0 -4.0 HAD family hydrolase compare
IAI47_08325 -1.0 -4.7 protein-glutamate O-methyltransferase CheR compare
IAI47_18410 -1.0 -4.1 diaminopimelate epimerase compare
IAI47_21675 -1.0 -2.8 helix-turn-helix domain-containing protein compare
IAI47_04830 -1.0 -3.7 autonomous glycyl radical cofactor GrcA compare
IAI47_02600 -1.0 -6.3 FtsH protease activity modulator HflK compare
IAI47_01005 -0.9 -6.7 DUF413 domain-containing protein compare
IAI47_01000 -0.9 -7.2 HTH-type transcriptional regulator HdfR compare
IAI47_06965 -0.9 -1.3 glycosyltransferase family 2 protein compare
IAI47_00430 -0.9 -7.0 DNA polymerase I compare
IAI47_12930 -0.9 -1.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_04110 -0.9 -8.4 two-component sensor histidine kinase BarA compare
IAI47_18530 -0.9 -2.3 thioredoxin TrxA compare
IAI47_08300 -0.9 -6.0 chemotaxis protein CheA compare
IAI47_02850 -0.9 -5.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_14325 -0.9 -1.5 ribosome-associated protein YbcJ compare
IAI47_00500 -0.9 -7.1 ATP-dependent DNA helicase RecG compare
IAI47_12880 -0.9 -7.0 formate C-acetyltransferase compare
IAI47_03400 -0.9 -4.3 deoxyribose-phosphate aldolase compare
IAI47_11635 -0.9 -2.4 hypothetical protein compare
IAI47_12280 -0.9 -6.0 glucan biosynthesis protein G compare
IAI47_10545 -0.9 -1.5 hypothetical protein compare
IAI47_13765 -0.9 -1.9 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_08335 -0.9 -4.1 chemotaxis response regulator CheY compare
IAI47_14955 -0.9 -1.7 phosphate starvation-inducible protein compare
IAI47_09240 -0.9 -2.0 HTH-type transcriptional regulator CysB compare
IAI47_07520 -0.9 -5.3 MobA/MobL family protein compare
IAI47_06245 -0.9 -2.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_04425 -0.9 -4.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_17155 -0.9 -5.9 calcium/sodium antiporter compare
IAI47_07355 -0.9 -3.5 winged helix-turn-helix domain-containing protein compare
IAI47_07490 -0.9 -1.5 DNA-binding protein compare
IAI47_09210 -0.9 -3.4 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_06235 -0.9 -3.9 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_01830 -0.9 -5.9 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_08065 -0.9 -3.0 acyltransferase compare
IAI47_10565 -0.9 -1.1 DUF4113 domain-containing protein compare
IAI47_03590 -0.8 -4.4 YggT family protein compare
IAI47_04770 -0.8 -4.4 ATP-binding protein compare
IAI47_18240 -0.8 -1.4 NAD(P)H-flavin reductase compare
IAI47_02605 -0.8 -5.7 protease modulator HflC compare
IAI47_00935 -0.8 -3.4 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_07905 -0.8 -0.6 Arc family DNA-binding protein compare
IAI47_18145 -0.8 -1.6 elongation factor Tu compare
IAI47_16990 -0.8 -2.4 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_16490 -0.8 -2.5 PTS sugar transporter subunit IIA compare
IAI47_18705 -0.8 -5.4 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_14750 -0.8 -3.8 phosphatidylglycerophosphatase A compare
IAI47_05660 -0.8 -3.9 serine protease compare
IAI47_00505 -0.8 -3.9 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_07485 -0.8 -2.2 DUF4756 family protein compare
IAI47_07360 -0.8 -1.8 hypothetical protein compare
IAI47_06595 -0.8 -1.6 hypothetical protein compare
IAI47_03805 -0.8 -3.3 FAD assembly factor SdhE compare
IAI47_06410 -0.8 -2.6 NADH-quinone oxidoreductase subunit L compare
IAI47_13760 -0.8 -1.5 succinate dehydrogenase membrane anchor subunit compare
IAI47_12655 -0.8 -5.1 Lon protease family protein compare
IAI47_10575 -0.8 -2.0 hypothetical protein compare
IAI47_15635 -0.8 -1.1 RNA polymerase-binding protein DksA compare
IAI47_11470 -0.8 -2.3 IS1 family transposase compare
IAI47_19825 -0.8 -3.1 EAL domain-containing protein compare
IAI47_04775 -0.7 -1.9 SIR2 family protein compare
IAI47_06420 -0.7 -2.0 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_10775 -0.7 -2.3 ribonuclease T compare
IAI47_17200 -0.7 -5.0 RNase adapter RapZ compare
IAI47_20415 -0.7 -4.0 two-component system response regulator DcuR compare
IAI47_10430 -0.7 -1.6 hypothetical protein compare
IAI47_13725 -0.7 -2.8 cytochrome ubiquinol oxidase subunit I compare
IAI47_03550 -0.7 -5.4 membrane-bound lytic murein transglycosylase MltC compare
IAI47_06385 -0.7 -2.1 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_03250 -0.7 -5.6 spore coat U domain-containing protein compare
IAI47_20480 -0.7 -2.6 YfiR family protein compare
IAI47_21880 -0.7 -0.5 ParA family protein compare
IAI47_00370 -0.7 -5.6 ribokinase compare
IAI47_21600 -0.7 -1.8 EamA family transporter compare
IAI47_06370 -0.7 -2.5 NADH-quinone oxidoreductase subunit C/D compare
IAI47_05755 -0.7 -2.4 hypothetical protein compare
IAI47_03260 -0.7 -4.8 molecular chaperone compare
IAI47_09855 -0.7 -2.1 DUF2384 domain-containing protein compare
IAI47_07335 -0.7 -4.5 hypothetical protein compare
IAI47_14805 -0.7 -3.1 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_03575 -0.7 -2.6 DUF2884 domain-containing protein compare
IAI47_21665 -0.7 -0.9 DUF333 domain-containing protein compare
IAI47_18475 -0.7 -4.5 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_14200 -0.7 -1.5 hypothetical protein compare
IAI47_10340 -0.7 -2.9 mannose-6-phosphate isomerase compare
IAI47_01180 -0.7 -0.9 prolyl oligopeptidase family serine peptidase compare
IAI47_00875 -0.7 -0.9 met regulon transcriptional regulator MetJ compare
IAI47_04950 -0.7 -3.9 nitrogen regulatory protein P-II compare
IAI47_14280 -0.7 -4.0 type VI secretion system tube protein Hcp compare
IAI47_10320 -0.7 -0.5 Rrf2 family transcriptional regulator compare
IAI47_20600 -0.7 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 across organisms