Experiment set7IT080 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50

200 most detrimental genes:

  gene name fitness t score description  
IAI47_06355 +7.0 28.6 transcriptional regulator LrhA compare
IAI47_16390 +3.1 6.0 tRNA-Leu compare
IAI47_19710 +1.9 3.6 helix-turn-helix transcriptional regulator compare
IAI47_07550 +1.8 1.8 tRNA-Asn compare
IAI47_08000 +1.5 8.6 flagellar basal body-associated protein FliL compare
IAI47_08655 +1.2 6.8 transcriptional regulator BetI compare
IAI47_07930 +1.2 1.8 DUF2158 domain-containing protein compare
IAI47_05745 +1.1 2.1 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_20505 +1.1 5.9 type II toxin-antitoxin system PrlF family antitoxin compare
IAI47_05580 +1.1 1.9 membrane protein YpdK compare
IAI47_07885 +1.0 1.8 tRNA-Asn compare
IAI47_10825 +1.0 2.0 tRNA-Val compare
IAI47_04740 +1.0 2.3 hypothetical protein compare
IAI47_06790 +1.0 3.3 alkyl hydroperoxide reductase subunit C compare
IAI47_08280 +1.0 6.8 flagellar transcriptional regulator FlhD compare
IAI47_12915 +1.0 5.7 leucine-responsive transcriptional regulator Lrp compare
IAI47_05810 +0.9 2.8 hypothetical protein compare
IAI47_21035 +0.9 2.8 TetR/AcrR family transcriptional regulator compare
IAI47_07990 +0.9 3.7 flagellar motor switch protein FliN compare
IAI47_11210 +0.9 6.3 type VI secretion system-associated protein TagF compare
IAI47_12170 +0.9 6.3 flagellar basal body P-ring formation protein FlgA compare
IAI47_08005 +0.9 6.0 flagellar hook-length control protein FliK compare
IAI47_02345 +0.9 1.8 5S ribosomal RNA compare
IAI47_13950 +0.9 1.5 PhoH family protein compare
IAI47_06940 +0.9 1.1 tyrosine-protein kinase Wzc compare
IAI47_08010 +0.9 6.3 flagella biosynthesis chaperone FliJ compare
IAI47_08015 +0.9 6.4 flagellum-specific ATP synthase FliI compare
IAI47_12165 +0.9 5.5 flagellar basal body rod protein FlgB compare
IAI47_12150 +0.9 7.4 flagellar hook protein FlgE compare
IAI47_20715 +0.9 4.1 helix-turn-helix transcriptional regulator compare
IAI47_11215 +0.8 6.5 type VI secretion system-associated FHA domain protein TagH compare
IAI47_08035 +0.8 1.5 flagellar hook-basal body complex protein FliE compare
IAI47_12135 +0.8 6.7 flagellar basal body L-ring protein FlgH compare
IAI47_08295 +0.8 6.3 flagellar motor protein MotB compare
IAI47_13840 +0.8 1.8 replication initiation negative regulator SeqA compare
IAI47_19850 +0.8 1.8 hypothetical protein compare
IAI47_19875 +0.8 3.8 TetR/AcrR family transcriptional regulator compare
IAI47_10720 +0.8 3.8 transcriptional regulator SlyA compare
IAI47_06455 +0.8 3.4 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_14015 +0.8 3.7 ribosome silencing factor compare
IAI47_20760 +0.8 4.9 DUF1852 domain-containing protein compare
IAI47_10455 +0.8 2.2 electron transport complex subunit RsxC compare
IAI47_08465 +0.8 4.1 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_08340 +0.8 3.9 protein phosphatase CheZ compare
IAI47_08330 +0.8 4.2 chemotaxis response regulator protein-glutamate methylesterase compare
IAI47_07975 +0.8 4.1 flagellar biosynthesis protein FliQ compare
IAI47_12140 +0.8 4.0 flagellar basal-body rod protein FlgG compare
IAI47_15025 +0.8 2.1 transcriptional regulator LldR compare
IAI47_19045 +0.8 2.2 two-component-system connector protein YcgZ compare
IAI47_20850 +0.7 2.6 TetR/AcrR family transcriptional regulator compare
IAI47_08145 +0.7 6.6 flagellin FliC compare
IAI47_08540 +0.7 3.2 YebY family protein compare
IAI47_16600 +0.7 1.5 tRNA-OTHER compare
IAI47_12160 +0.7 4.7 flagellar basal body rod protein FlgC compare
IAI47_20995 +0.7 2.1 hypothetical protein compare
IAI47_00130 +0.7 5.0 LacI family DNA-binding transcriptional regulator compare
IAI47_12155 +0.7 5.0 flagellar hook assembly protein FlgD compare
IAI47_20625 +0.7 2.3 DUF2946 domain-containing protein compare
IAI47_07995 +0.7 5.5 flagellar motor switch protein FliM compare
IAI47_07985 +0.7 4.0 flagellar biosynthetic protein FliO compare
IAI47_05490 +0.7 2.9 tRNA-Val compare
IAI47_10285 +0.7 3.9 SrfC compare
IAI47_19140 +0.7 3.9 helix-turn-helix transcriptional regulator compare
IAI47_15815 +0.7 3.0 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
IAI47_07895 +0.7 4.8 hypothetical protein compare
IAI47_12145 +0.7 4.1 flagellar basal body rod protein FlgF compare
IAI47_19690 +0.7 1.2 hypothetical protein compare
IAI47_08350 +0.7 4.9 flagellar biosynthesis protein FlhA compare
IAI47_07980 +0.7 4.6 flagellar type III secretion system pore protein FliP compare
IAI47_12180 +0.7 3.3 flagellar export chaperone FlgN compare
IAI47_05775 +0.7 3.3 type II toxin-antitoxin system MqsA family antitoxin compare
IAI47_08030 +0.7 5.4 flagellar M-ring protein FliF compare
IAI47_08285 +0.7 4.5 flagellar transcriptional regulator FlhC compare
IAI47_13305 +0.7 3.4 helix-turn-helix transcriptional regulator compare
IAI47_08290 +0.7 4.9 flagellar motor stator protein MotA compare
IAI47_12130 +0.7 5.5 flagellar basal body P-ring protein FlgI compare
IAI47_11195 +0.7 3.2 SH3 domain-containing protein compare
IAI47_20630 +0.7 3.5 DUF2534 family protein compare
IAI47_15080 +0.7 2.5 cold-shock protein compare
IAI47_12110 +0.7 2.4 ribonuclease E compare
IAI47_06450 +0.7 2.1 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_09470 +0.7 2.4 hypothetical protein compare
IAI47_12125 +0.7 5.1 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_09395 +0.6 1.9 phage shock protein PspA compare
IAI47_08345 +0.6 5.0 flagellar type III secretion system protein FlhB compare
IAI47_14075 +0.6 1.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_12355 +0.6 1.4 hydroxymyristoyl-ACP dehydratase compare
IAI47_11735 +0.6 1.7 histidinol-phosphatase compare
IAI47_04855 +0.6 1.6 anti-sigma-E factor RseA compare
IAI47_09970 +0.6 3.4 DeoR/GlpR transcriptional regulator compare
IAI47_00125 +0.6 3.6 sugar phosphate isomerase/epimerase compare
IAI47_21770 +0.6 2.7 Txe/YoeB family addiction module toxin compare
IAI47_05765 +0.6 1.3 hypothetical protein compare
IAI47_12300 +0.6 2.4 hypothetical protein compare
IAI47_00085 +0.6 4.1 class II glutamine amidotransferase compare
IAI47_09550 +0.6 2.4 hypothetical protein compare
IAI47_19780 +0.6 2.6 TetR/AcrR family transcriptional regulator compare
IAI47_12570 +0.6 0.9 tRNA-Ser compare
IAI47_00730 +0.6 1.9 glutaredoxin 3 compare
IAI47_15975 +0.6 2.5 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_09490 +0.6 3.0 DUF333 domain-containing protein compare
IAI47_04450 +0.6 1.7 tRNA-Ala compare
IAI47_20840 +0.6 2.7 Lrp/AsnC family transcriptional regulator compare
IAI47_08025 +0.6 3.3 flagellar motor switch protein FliG compare
IAI47_20550 +0.6 1.4 ABC transporter permease compare
IAI47_09265 +0.6 1.8 LapA family protein compare
IAI47_19430 +0.6 2.3 GNAT family N-acetyltransferase compare
IAI47_12370 +0.6 1.3 acyl carrier protein compare
IAI47_07010 +0.6 1.6 ABC transporter permease compare
IAI47_11175 +0.6 1.9 ABC transporter ATP-binding protein compare
IAI47_18265 +0.6 1.8 Sec-independent protein translocase subunit TatB compare
IAI47_12120 +0.5 4.5 flagellar hook-associated protein FlgK compare
IAI47_14945 +0.5 1.3 pyrroline-5-carboxylate reductase compare
IAI47_09615 +0.5 2.5 LysR family transcriptional regulator compare
IAI47_04945 +0.5 3.7 two-component system response regulator GlrR compare
IAI47_00675 +0.5 4.8 glycosyltransferase family 9 protein compare
IAI47_00925 +0.5 1.8 hypothetical protein compare
IAI47_19385 +0.5 3.4 (2Fe-2S)-binding protein compare
IAI47_18985 +0.5 2.1 MarR family transcriptional regulator compare
IAI47_06625 +0.5 3.1 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_05130 +0.5 3.6 DNA-binding protein compare
IAI47_14940 +0.5 1.4 YaiI/YqxD family protein compare
IAI47_19210 +0.5 3.1 tyrosine-type recombinase/integrase compare
IAI47_03645 +0.5 4.7 O-antigen ligase family protein compare
IAI47_21265 +0.5 2.7 ATP-binding cassette domain-containing protein compare
IAI47_09280 +0.5 1.6 stress response translation initiation inhibitor YciH compare
IAI47_07250 +0.5 1.5 tRNA-Asn compare
IAI47_06480 +0.5 3.7 phosphotransferase RcsD compare
IAI47_00670 +0.5 4.8 sugar glycosyltransferase compare
IAI47_10680 +0.5 2.4 TetR/AcrR family transcriptional regulator compare
IAI47_08530 +0.5 1.8 copper homeostasis periplasmic binding protein CopC compare
IAI47_08020 +0.5 2.9 flagellar assembly protein FliH compare
IAI47_19275 +0.5 2.1 DMT family transporter compare
IAI47_13575 +0.5 2.6 molybdenum-dependent transcriptional regulator compare
IAI47_09610 +0.5 3.8 Tar ligand binding domain-containing protein compare
IAI47_14665 +0.5 3.0 transcriptional regulator BolA compare
IAI47_07970 +0.5 3.4 flagellar type III secretion system protein FliR compare
IAI47_13705 +0.5 2.4 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_13310 +0.5 2.4 MerR family transcriptional regulator compare
IAI47_01740 +0.5 1.9 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_11920 +0.5 3.3 high frequency lysogenization protein HflD compare
IAI47_08695 +0.5 2.5 GAF domain-containing protein compare
IAI47_08845 +0.5 0.8 cell division topological specificity factor MinE compare
IAI47_03640 +0.5 4.4 glycosyltransferase compare
IAI47_20755 +0.5 2.8 methionine synthase compare
IAI47_17910 +0.5 1.6 chorismate lyase compare
IAI47_15645 +0.5 2.4 polynucleotide adenylyltransferase PcnB compare
IAI47_17900 +0.5 0.8 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_09110 +0.5 2.7 hypothetical protein compare
IAI47_15880 +0.5 1.0 DNA gyrase inhibitor YacG compare
IAI47_11260 +0.5 1.8 SirB2 family protein compare
IAI47_11220 +0.5 2.6 serine/threonine-protein phosphatase compare
IAI47_07000 +0.5 3.2 UDP-glucose 4-epimerase GalE compare
IAI47_18720 +0.5 3.6 DUF535 domain-containing protein compare
IAI47_08140 +0.5 3.6 flagellar filament capping protein FliD compare
IAI47_14020 +0.5 2.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_17205 +0.5 1.4 PTS phosphocarrier protein NPr compare
IAI47_19575 +0.5 1.9 hypothetical protein compare
IAI47_10145 +0.5 1.4 winged helix-turn-helix transcriptional regulator compare
IAI47_09390 +0.5 2.6 phage shock protein operon transcriptional activator compare
IAI47_13850 +0.5 1.8 LexA regulated protein compare
IAI47_11475 +0.5 0.6 hypothetical protein compare
IAI47_21290 +0.5 1.4 alpha/beta hydrolase compare
IAI47_09860 +0.5 1.4 RES family NAD+ phosphorylase compare
IAI47_19200 +0.5 2.7 GNAT family N-acetyltransferase compare
IAI47_15995 +0.5 0.7 leu operon leader peptide compare
IAI47_20015 +0.5 3.2 MsnO8 family LLM class oxidoreductase compare
IAI47_07605 +0.5 2.1 ABC transporter permease compare
IAI47_19600 +0.5 1.2 ABC transporter ATP-binding protein compare
IAI47_15735 +0.5 2.7 four-carbon acid sugar kinase family protein compare
IAI47_11550 +0.5 1.0 hypothetical protein compare
IAI47_21090 +0.5 3.1 LysR family transcriptional regulator compare
IAI47_16015 +0.5 2.1 3-isopropylmalate dehydratase small subunit compare
IAI47_10250 +0.5 3.6 TonB-dependent receptor compare
IAI47_09125 +0.5 1.9 YciI family protein compare
IAI47_10015 +0.5 2.6 TIM barrel protein compare
IAI47_01815 +0.5 2.1 hypothetical protein compare
IAI47_06415 +0.5 1.6 NADH-quinone oxidoreductase subunit M compare
IAI47_13070 +0.4 2.9 GrxA family glutaredoxin compare
IAI47_04415 +0.4 2.5 ribosome-associated translation inhibitor RaiA compare
IAI47_03565 +0.4 2.9 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
IAI47_00120 +0.4 2.5 sugar kinase compare
IAI47_09720 +0.4 3.0 TetR/AcrR family transcriptional regulator compare
IAI47_13935 +0.4 0.7 tRNA-Gln compare
IAI47_07800 +0.4 1.9 phosphonate ABC transporter ATP-binding protein compare
IAI47_20940 +0.4 2.2 hypothetical protein compare
IAI47_06780 +0.4 2.5 iron-sulfur cluster carrier protein ApbC compare
IAI47_08710 +0.4 3.0 protease HtpX compare
IAI47_05865 +0.4 2.6 hypothetical protein compare
IAI47_09755 +0.4 1.9 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_17170 +0.4 2.4 LPS export ABC transporter periplasmic protein LptC compare
IAI47_05780 +0.4 2.6 hypothetical protein compare
IAI47_15345 +0.4 3.6 murein transglycosylase D compare
IAI47_14660 +0.4 2.4 trigger factor compare
IAI47_06570 +0.4 2.9 nucleoid-associated protein YejK compare
IAI47_15625 +0.4 2.3 RNA 2',3'-cyclic phosphodiesterase compare
IAI47_19460 +0.4 2.7 LysR family transcriptional regulator compare
IAI47_05065 +0.4 1.4 YfgM family protein compare
IAI47_13565 +0.4 2.6 molybdate ABC transporter substrate-binding protein compare
IAI47_13320 +0.4 2.1 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 across organisms