Experiment set7IT080 for Bifidobacterium breve UCC2003

Compare to:

MRS Time6hr

200 most important genes:

  gene name fitness t score description  
BBR_RS15090 -2.9 -1.5 type II 3-dehydroquinate dehydratase compare
BBR_RS15085 -2.9 -1.8 3-dehydroquinate synthase compare
BBR_RS13035 -2.7 -1.8 ABC transporter permease compare
BBR_RS13910 -2.6 -2.4 arginine repressor compare
BBR_RS17440 -2.6 -2.3 DUF3027 domain-containing protein compare
BBR_RS18690 -2.5 -7.0 diacylglycerol kinase compare
BBR_RS19450 -2.5 -1.8 GTPase ObgE compare
BBR_RS19905 -2.4 -1.2 methionine--tRNA ligase compare
BBR_RS12235 -2.4 -0.9 hypothetical protein compare
BBR_RS19760 -2.3 -2.1 polysaccharide ABC transporter ATPase compare
BBR_RS17640 -2.1 -1.4 DNA-directed RNA polymerase subunit omega compare
BBR_RS13125 -1.8 -1.8 ABC transporter permease compare
BBR_RS19160 -1.7 -0.8 phosphate ABC transporter permease subunit PstC compare
BBR_RS13770 -1.6 -2.4 DNA repair protein RecO compare
BBR_RS13215 -1.6 -1.6 hypothetical protein compare
BBR_RS15080 -1.6 -2.1 chorismate synthase compare
BBR_RS10445 -1.6 -11.5 HlyC/CorC family transporter compare
BBR_RS14640 -1.6 -3.4 amino acid ABC transporter permease compare
BBR_RS14645 -1.5 -2.9 amino acid ABC transporter permease compare
BBR_RS16610 -1.5 -3.1 hypothetical protein compare
BBR_RS13305 -1.5 -3.6 transcriptional repressor compare
BBR_RS13070 -1.4 -0.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS20775 -1.4 -1.1 DUF4230 domain-containing protein compare
BBR_RS14280 -1.4 -2.4 dephospho-CoA kinase compare
BBR_RS12545 -1.4 -1.3 DUF4012 domain-containing protein compare
BBR_RS14240 -1.4 -5.2 1,4-alpha-glucan branching protein GlgB compare
BBR_RS10625 -1.3 -1.1 FHA domain-containing protein compare
BBR_RS19055 -1.3 -1.1 ferredoxin family protein compare
BBR_RS16400 -1.3 -1.9 hypothetical protein compare
BBR_RS12720 -1.3 -2.1 hypothetical protein compare
BBR_RS11675 -1.2 -0.8 hypothetical protein compare
BBR_RS10255 -1.2 -0.8 chromosomal replication initiator protein DnaA compare
BBR_RS15360 -1.2 -2.1 hypothetical protein compare
BBR_RS14585 -1.2 -1.0 hypothetical protein compare
BBR_RS13820 -1.2 -0.7 ATP-binding protein compare
BBR_RS12340 -1.1 -1.9 Arc family DNA-binding protein compare
BBR_RS15915 -1.1 -0.5 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS13735 -1.1 -1.2 Lon protease compare
BBR_RS16255 -1.1 -2.3 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS19070 -1.1 -0.8 50S ribosomal protein L33 compare
BBR_RS15055 -1.1 -3.4 hypothetical protein compare
BBR_RS11540 -1.1 -1.6 DUF1727 domain-containing protein compare
BBR_RS13030 -1.1 -1.8 cell division ATP-binding protein FtsE compare
BBR_RS16710 -1.1 -2.9 hypothetical protein compare
BBR_RS20830 -1.0 -1.7 hypothetical protein compare
BBR_RS14775 -1.0 -2.5 hypothetical protein compare
BBR_RS17190 -1.0 -1.0 transcriptional regulator compare
BBR_RS10580 -1.0 -1.1 septation inhibitor protein compare
BBR_RS15805 -1.0 -3.5 prolipoprotein diacylglyceryl transferase compare
BBR_RS13300 -1.0 -0.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS13525 -1.0 -2.5 CrcB family protein compare
BBR_RS15650 -1.0 -1.9 Holliday junction resolvase compare
BBR_RS12030 -1.0 -1.3 F0F1 ATP synthase subunit epsilon compare
BBR_RS14225 -1.0 -2.3 ComF family protein compare
BBR_RS16965 -1.0 -1.6 ATP-dependent DNA helicase compare
BBR_RS15550 -1.0 -1.9 L-lactate dehydrogenase compare
BBR_RS14370 -1.0 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS13455 -0.9 -2.4 formate-dependent phosphoribosylglycinamide formyltransferase compare
BBR_RS18170 -0.9 -1.7 dihydropteroate synthase compare
BBR_RS13420 -0.9 -1.9 DUF4230 domain-containing protein compare
BBR_RS11145 -0.9 -2.5 hypothetical protein compare
BBR_RS16250 -0.9 -2.6 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS19435 -0.9 -1.2 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS16625 -0.9 -3.0 DUF3710 domain-containing protein compare
BBR_RS14630 -0.9 -2.9 glutamine-binding protein glnH compare
BBR_RS16525 -0.9 -2.8 RecX family transcriptional regulator compare
BBR_RS15880 -0.9 -1.9 hypothetical protein compare
BBR_RS16095 -0.9 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
BBR_RS15160 -0.8 -2.5 PhoH family protein compare
BBR_RS16385 -0.8 -2.3 hypothetical protein compare
BBR_RS14140 -0.8 -2.6 Ppx/GppA family phosphatase compare
BBR_RS16080 -0.8 -2.3 DUF1287 domain-containing protein compare
BBR_RS10905 -0.8 -1.8 nucleotide exchange factor GrpE compare
BBR_RS18575 -0.8 -2.1 hypothetical protein compare
BBR_RS11510 -0.8 -1.0 signal recognition particle-docking protein FtsY compare
BBR_RS14900 -0.8 -1.5 DNA-binding response regulator compare
BBR_RS19345 -0.8 -1.3 tRNA-Val compare
BBR_RS12710 -0.8 -2.6 hypothetical protein compare
BBR_RS14475 -0.7 -3.5 formate C-acetyltransferase compare
BBR_RS15460 -0.7 -1.6 hypothetical protein compare
BBR_RS17700 -0.7 -2.0 CRISPR-associated protein Cas4 compare
BBR_RS15075 -0.7 -2.4 peptidase A24 compare
BBR_RS16675 -0.7 -1.3 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS12680 -0.7 -1.3 hypothetical protein compare
BBR_RS21030 -0.7 -1.4 hypothetical protein compare
BBR_RS13505 -0.7 -1.4 DUF4391 domain-containing protein compare
BBR_RS12840 -0.7 -3.4 DUF4916 domain-containing protein compare
BBR_RS20455 -0.7 -2.0 thioredoxin-disulfide reductase compare
BBR_RS12295 -0.7 -0.3 RNA-binding protein compare
BBR_RS19270 -0.6 -0.3 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS14290 -0.6 -1.5 TerC family protein compare
BBR_RS14450 -0.6 -3.0 methionine ABC transporter ATP-binding protein compare
BBR_RS20750 -0.6 -0.8 GntR family transcriptional regulator compare
BBR_RS15445 -0.6 -2.0 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS20910 -0.6 -1.0 DUF1829 domain-containing protein compare
BBR_RS13630 -0.6 -1.2 carbamoyl-phosphate synthase small subunit compare
BBR_RS18635 -0.6 -2.0 PspC domain-containing protein compare
BBR_RS14765 -0.6 -0.9 hypothetical protein compare
BBR_RS19375 -0.6 -0.4 acyl-CoA carboxylase subunit beta compare
BBR_RS18325 -0.6 -1.1 DNA-binding protein compare
BBR_RS10720 -0.6 -4.2 PDZ domain-containing protein compare
BBR_RS13940 -0.6 -1.3 integrase compare
BBR_RS21060 -0.6 -1.6 hypothetical protein compare
BBR_RS21000 -0.6 -1.3 hypothetical protein compare
BBR_RS14330 -0.6 -1.2 glycogen debranching enzyme GlgX compare
BBR_RS19740 -0.6 -4.5 DUF2142 domain-containing protein compare
BBR_RS14230 -0.6 -1.8 HAMP domain-containing histidine kinase compare
BBR_RS15070 -0.6 -1.0 endolytic transglycosylase MltG compare
BBR_RS16540 -0.6 -1.1 XRE family transcriptional regulator compare
BBR_RS12770 -0.6 -1.2 hypothetical protein compare
BBR_RS17555 -0.6 -0.8 ubiquitin-like protein Pup compare
BBR_RS20660 -0.6 -1.9 hypothetical protein compare
BBR_RS10615 -0.6 -1.3 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS10990 -0.6 -2.8 recombination protein RecR compare
BBR_RS15470 -0.6 -2.3 LysR family transcriptional regulator compare
BBR_RS21010 -0.5 -1.9 hypothetical protein compare
BBR_RS15140 -0.5 -1.6 RNA methyltransferase compare
BBR_RS16745 -0.5 -2.2 segregation/condensation protein A compare
BBR_RS19540 -0.5 -0.8 homoserine dehydrogenase compare
BBR_RS16040 -0.5 -1.3 hypothetical protein compare
BBR_RS16380 -0.5 -1.0 hypothetical protein compare
BBR_RS15330 -0.5 -1.1 hypothetical protein compare
BBR_RS16820 -0.5 -0.8 RNA polymerase sigma factor RpoE compare
BBR_RS21085 -0.5 -1.0 hypothetical protein compare
BBR_RS17240 -0.5 -2.4 hypothetical protein compare
BBR_RS12985 -0.5 -2.5 MFS transporter compare
BBR_RS16100 -0.5 -1.5 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein compare
BBR_RS15955 -0.5 -1.3 hypothetical protein compare
BBR_RS20815 -0.5 -1.0 potassium transporter Trk compare
BBR_RS15010 -0.5 -1.5 glutamine amidotransferase compare
BBR_RS14980 -0.5 -1.7 xanthine phosphoribosyltransferase compare
BBR_RS19190 -0.5 -2.3 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS20625 -0.5 -1.7 hypothetical protein compare
BBR_RS13510 -0.5 -2.3 LysR family transcriptional regulator compare
BBR_RS20780 -0.5 -1.0 hypothetical protein compare
BBR_RS11385 -0.5 -2.4 hypothetical protein compare
BBR_RS14970 -0.5 -0.9 transcriptional regulator compare
BBR_RS20795 -0.5 -0.2 cystathionine gamma-lyase compare
BBR_RS11720 -0.5 -1.3 DUF2469 domain-containing protein compare
BBR_RS18370 -0.5 -2.7 hypothetical protein compare
BBR_RS17150 -0.5 -1.7 YggT family protein compare
BBR_RS13315 -0.5 -1.9 hypothetical protein compare
BBR_RS18465 -0.5 -2.1 integrase compare
BBR_RS15850 -0.5 -1.0 ASCH domain-containing protein compare
BBR_RS18550 -0.5 -2.3 universal stress protein compare
BBR_RS15295 -0.5 -1.5 Cof-type HAD-IIB family hydrolase compare
BBR_RS16135 -0.5 -0.9 peptide deformylase compare
BBR_RS16730 -0.5 -2.4 quinolinate synthase NadA compare
BBR_RS17475 -0.5 -1.4 cold-shock protein compare
BBR_RS16685 -0.5 -0.3 alcohol dehydrogenase compare
BBR_RS17320 -0.5 -1.7 response regulator compare
BBR_RS17460 -0.5 -1.7 TPM domain-containing protein compare
BBR_RS16555 -0.5 -0.2 DNA translocase FtsK compare
BBR_RS15990 -0.5 -1.5 DNA-binding response regulator compare
BBR_RS13970 -0.5 -1.7 thiazole biosynthesis adenylyltransferase ThiF compare
BBR_RS12555 -0.5 -1.5 protein-tyrosine-phosphatase compare
BBR_RS13255 -0.4 -1.5 hypothetical protein compare
BBR_RS11360 -0.4 -2.0 restriction endonuclease compare
BBR_RS12270 -0.4 -1.8 hypothetical protein compare
BBR_RS15410 -0.4 -1.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
BBR_RS16490 -0.4 -1.1 polyprenyl synthase compare
BBR_RS13340 -0.4 -1.4 TIGR03943 family protein compare
BBR_RS14635 -0.4 -0.8 amino acid ABC transporter ATP-binding protein compare
BBR_RS13625 -0.4 -0.7 transcription antitermination factor NusB compare
BBR_RS21145 -0.4 -1.4 ISL3 family transposase compare
BBR_RS18180 -0.4 -1.8 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS19395 -0.4 -0.6 hypothetical protein compare
BBR_RS18110 -0.4 -2.0 peptide deformylase compare
BBR_RS13655 -0.4 -1.7 hypothetical protein compare
BBR_RS14490 -0.4 -2.0 ribonuclease D compare
BBR_RS14055 -0.4 -1.3 ABC-2 transporter permease compare
BBR_RS15745 -0.4 -0.8 hydrolase or phosphatase compare
BBR_RS15260 -0.4 -1.4 glutamate synthase subunit beta compare
BBR_RS16470 -0.4 -1.7 MFS transporter compare
BBR_RS16850 -0.4 -2.0 peptidase M24 family protein compare
BBR_RS17175 -0.4 -1.7 hypothetical protein compare
BBR_RS11315 -0.4 -0.4 MFS transporter compare
BBR_RS12390 -0.4 -2.0 MerR family transcriptional regulator compare
BBR_RS12490 -0.4 -1.0 hypothetical protein compare
BBR_RS14365 -0.4 -1.4 hypothetical protein compare
BBR_RS15340 -0.4 -0.8 hypothetical protein compare
BBR_RS14780 -0.4 -1.2 XRE family transcriptional regulator compare
BBR_RS20845 -0.4 -1.6 cupin compare
BBR_RS15235 -0.4 -1.5 coproporphyrinogen III oxidase compare
BBR_RS19755 -0.4 -2.1 glycosyl transferase compare
BBR_RS18545 -0.4 -1.5 peroxiredoxin compare
BBR_RS11175 -0.4 -2.4 penicillin-binding protein compare
BBR_RS10960 -0.4 -2.1 hypothetical protein compare
BBR_RS13310 -0.4 -1.4 hypothetical protein compare
BBR_RS15900 -0.4 -2.1 hypothetical protein compare
BBR_RS15840 -0.4 -1.4 VanZ family protein compare
BBR_RS16595 -0.4 -1.2 N-acetyltransferase compare
BBR_RS20470 -0.4 -2.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
BBR_RS18990 -0.4 -0.5 AbrB family transcriptional regulator compare
BBR_RS12785 -0.4 -0.7 transcriptional regulator compare
BBR_RS19815 -0.4 -2.6 ABC transporter permease compare
BBR_RS19965 -0.4 -1.5 transposase compare
BBR_RS19465 -0.3 -0.8 ribonuclease E/G compare
BBR_RS13955 -0.3 -1.9 argininosuccinate lyase compare
BBR_RS16515 -0.3 -1.0 preprotein translocase subunit SecA compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in mrs timecourse experiments