Experiment set7IT079 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3976.1 -4.8 -7.4 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1241.1 -4.4 -5.2 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4844.1 -4.3 -1.4 FIG01210764: hypothetical protein compare
Xcc-8004.2110.1 -3.9 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3054.1 -3.8 -2.4 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4039.1 -3.6 -3.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.623.1 -3.3 -2.3 Phosphoserine phosphatase compare
Xcc-8004.1236.1 -3.1 -6.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.2182.1 -3.1 -14.2 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2922.1 -2.9 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.288.1 -2.8 -1.5 Ferredoxin compare
Xcc-8004.4620.1 -2.8 -8.4 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2921.1 -2.8 -3.7 ferrous iron transport protein compare
Xcc-8004.5224.1 -2.7 -1.7 bleomycin resistance protein compare
Xcc-8004.3703.1 -2.6 -2.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2652.1 -2.6 -3.2 response regulator compare
Xcc-8004.2923.1 -2.6 -9.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.1380.1 -2.6 -1.6 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.3498.1 -2.6 -1.1 hypothetical protein compare
Xcc-8004.3346.1 -2.5 -2.9 hypothetical protein compare
Xcc-8004.1651.1 -2.5 -7.3 putative Cytochrome bd2, subunit I compare
Xcc-8004.1372.1 -2.4 -1.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.3742.1 -2.2 -2.3 Type III effector compare
Xcc-8004.2334.1 -2.2 -6.5 Transport ATP-binding protein CydD compare
Xcc-8004.3041.1 -2.1 -2.2 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.171.1 -2.1 -1.3 hypothetical protein compare
Xcc-8004.574.1 -2.0 -6.7 Di-/tripeptide transporter compare
Xcc-8004.3855.1 -2.0 -6.1 FIG01209965: hypothetical protein compare
Xcc-8004.4381.1 -1.9 -4.3 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.4810.1 -1.9 -7.2 hypothetical protein compare
Xcc-8004.4046.1 -1.9 -9.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.2169.1 -1.9 -3.2 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.787.1 -1.8 -1.1 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.3979.1 -1.8 -6.0 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.429.1 -1.8 -2.1 hypothetical protein compare
Xcc-8004.2346.1 -1.8 -2.5 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.957.1 -1.8 -3.8 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.998.1 -1.8 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3731.1 -1.7 -2.0 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.2343.1 -1.7 -2.0 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.2924.1 -1.7 -5.1 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.319.1 -1.7 -9.0 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.2335.1 -1.7 -4.1 Transport ATP-binding protein CydC compare
Xcc-8004.3792.1 -1.7 -1.1 Mobile element protein compare
Xcc-8004.713.1 -1.6 -1.0 FIG01210186: hypothetical protein compare
Xcc-8004.1652.1 -1.6 -6.4 putative Cytochrome bd2, subunit II compare
Xcc-8004.1359.1 -1.6 -4.7 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4024.1 -1.6 -4.8 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.401.1 -1.6 -1.4 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.3040.1 -1.6 -2.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.3783.1 -1.6 -5.8 Two-component system sensor protein compare
Xcc-8004.5140.1 -1.6 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.494.1 -1.5 -4.3 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.4510.1 -1.5 -1.0 ATP binding component of ABC-transporter compare
Xcc-8004.3655.1 -1.5 -1.5 FIG01210025: hypothetical protein compare
Xcc-8004.318.1 -1.5 -4.8 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.3576.1 -1.5 -5.6 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1058.1 -1.4 -2.1 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.1244.1 -1.4 -6.2 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.1770.1 -1.4 -2.6 hypothetical protein compare
Xcc-8004.2958.1 -1.4 -1.6 tryptophan-rich sensory protein compare
Xcc-8004.1082.1 -1.4 -1.1 FIG01211203: hypothetical protein compare
Xcc-8004.280.1 -1.4 -5.2 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.2230.1 -1.4 -4.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.5369.1 -1.4 -3.7 Lipoprotein compare
Xcc-8004.1720.1 -1.3 -2.2 UPF0301 protein YqgE compare
Xcc-8004.645.1 -1.3 -1.3 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.3321.1 -1.3 -1.4 FIG01209847: hypothetical protein compare
Xcc-8004.2711.1 -1.3 -1.6 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.3815.1 -1.3 -2.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.3119.1 -1.3 -2.1 GTP-binding protein HflX compare
Xcc-8004.1205.1 -1.3 -2.2 hypothetical protein compare
Xcc-8004.2869.1 -1.3 -3.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1243.1 -1.3 -4.5 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.2266.1 -1.3 -0.9 FIG01211351: hypothetical protein compare
Xcc-8004.2559.1 -1.3 -1.4 hypothetical protein compare
Xcc-8004.127.1 -1.3 -1.7 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.2920.1 -1.3 -4.5 Ferrous iron transport protein B compare
Xcc-8004.3049.1 -1.3 -5.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.589.1 -1.3 -2.1 hypothetical protein compare
Xcc-8004.1790.1 -1.3 -3.2 Zinc uptake regulation protein ZUR compare
Xcc-8004.1132.1 -1.3 -1.8 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.4596.1 -1.3 -5.8 hypothetical protein compare
Xcc-8004.4285.1 -1.3 -6.0 two-component system sensor protein compare
Xcc-8004.5087.1 -1.2 -1.4 FIG027190: Putative transmembrane protein compare
Xcc-8004.4697.1 -1.2 -1.7 FIG01210654: hypothetical protein compare
Xcc-8004.1416.1 -1.2 -1.6 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.4954.1 -1.2 -4.2 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.4788.1 -1.2 -1.2 FIG01210406: hypothetical protein compare
Xcc-8004.4065.1 -1.2 -5.4 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.3322.1 -1.2 -1.4 FIG01211446: hypothetical protein compare
Xcc-8004.1710.1 -1.2 -3.4 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.5343.1 -1.2 -4.3 hypothetical protein compare
Xcc-8004.738.1 -1.2 -1.8 Malonate decarboxylase gamma subunit compare
Xcc-8004.298.1 -1.2 -2.3 Hypothetical protein YaeJ with similarity to translation release factor compare
Xcc-8004.601.1 -1.2 -3.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4112.1 -1.2 -2.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.5317.1 -1.2 -1.5 FIG01210332: hypothetical protein compare
Xcc-8004.1811.1 -1.2 -1.5 extracellular serine protease compare
Xcc-8004.585.1 -1.2 -1.8 Na(+) H(+) antiporter subunit F compare
Xcc-8004.395.1 -1.2 -3.8 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Xcc-8004.1616.1 -1.2 -1.2 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.1228.1 -1.1 -4.1 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.3647.1 -1.1 -2.9 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.4259.1 -1.1 -2.1 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Xcc-8004.271.1 -1.1 -2.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.3954.1 -1.1 -3.2 HflC protein compare
Xcc-8004.3978.1 -1.1 -1.8 FIG01211989: hypothetical protein compare
Xcc-8004.990.1 -1.1 -1.9 FIG01210796: hypothetical protein compare
Xcc-8004.4376.1 -1.1 -4.0 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.27.1 -1.1 -0.9 hypothetical protein compare
Xcc-8004.2060.1 -1.1 -2.1 Mobile element protein compare
Xcc-8004.1138.1 -1.1 -3.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.4945.1 -1.1 -0.7 FIG01210349: hypothetical protein compare
Xcc-8004.5186.1 -1.1 -1.8 hypothetical protein compare
Xcc-8004.659.1 -1.1 -1.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3165.1 -1.1 -1.3 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.2879.1 -1.1 -0.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4538.1 -1.1 -1.2 hypothetical protein compare
Xcc-8004.5100.1 -1.1 -1.3 FIG01211066: hypothetical protein compare
Xcc-8004.1841.1 -1.1 -2.4 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.3087.1 -1.0 -3.2 FIG01211583: hypothetical protein compare
Xcc-8004.5349.1 -1.0 -1.7 FIG01210492: hypothetical protein compare
Xcc-8004.4271.1 -1.0 -4.8 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) compare
Xcc-8004.2910.1 -1.0 -2.5 Regulatory protein, RpfE type compare
Xcc-8004.4200.1 -1.0 -0.9 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.1914.1 -1.0 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.1873.1 -1.0 -1.2 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.321.1 -1.0 -5.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.4250.1 -1.0 -1.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.3013.1 -1.0 -1.2 hypothetical protein compare
Xcc-8004.4948.1 -1.0 -1.6 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.432.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.5021.1 -1.0 -1.2 FIG01211474: hypothetical protein compare
Xcc-8004.1436.1 -1.0 -1.4 Holliday junction DNA helicase RuvA compare
Xcc-8004.4275.1 -1.0 -3.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.892.1 -1.0 -3.2 Coupling protein VirD4, ATPase required for T-DNA transfer compare
Xcc-8004.4294.1 -1.0 -2.0 membrane protein, putative compare
Xcc-8004.1032.1 -1.0 -3.4 Sensor histidine kinase compare
Xcc-8004.287.1 -0.9 -2.1 Haloalkane dehalogenase-like protein compare
Xcc-8004.5214.1 -0.9 -4.0 sal operon transcriptional repressor compare
Xcc-8004.953.1 -0.9 -1.6 Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family compare
Xcc-8004.2337.1 -0.9 -2.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.2277.1 -0.9 -2.5 FIG01211504: hypothetical protein compare
Xcc-8004.4457.1 -0.9 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.2434.1 -0.9 -2.3 hypothetical protein compare
Xcc-8004.4557.1 -0.9 -1.9 ABC transporter ATP-binding protein compare
Xcc-8004.3980.1 -0.9 -3.4 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.5335.1 -0.9 -1.4 FIG01214241: hypothetical protein compare
Xcc-8004.3228.1 -0.9 -2.3 hypothetical protein compare
Xcc-8004.565.1 -0.9 -3.6 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.1504.1 -0.9 -0.8 type IV pili signal transduction protein PilI compare
Xcc-8004.92.1 -0.9 -3.8 Dihydrofolate reductase (EC 1.5.1.3) compare
Xcc-8004.1478.1 -0.9 -2.5 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) compare
Xcc-8004.1090.1 -0.9 -3.2 hypothetical protein compare
Xcc-8004.2565.1 -0.9 -2.1 hypothetical protein compare
Xcc-8004.4558.1 -0.9 -1.0 ABC transporter permease compare
Xcc-8004.459.1 -0.9 -1.4 4-hydroxybenzoate transporter compare
Xcc-8004.4168.1 -0.9 -2.2 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.323.1 -0.9 -1.5 FIG01210738: hypothetical protein compare
Xcc-8004.3688.1 -0.9 -3.9 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
Xcc-8004.4976.1 -0.9 -5.3 hypothetical protein compare
Xcc-8004.1113.1 -0.9 -1.4 hypothetical protein compare
Xcc-8004.5368.1 -0.9 -2.0 FIG01210868: hypothetical protein compare
Xcc-8004.4264.1 -0.9 -1.5 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.1266.1 -0.9 -1.4 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.4499.1 -0.9 -1.4 Mobile element protein compare
Xcc-8004.1437.1 -0.9 -3.2 Kup system potassium uptake protein compare
Xcc-8004.4537.1 -0.9 -4.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) compare
Xcc-8004.5110.1 -0.9 -2.4 hypothetical protein compare
Xcc-8004.5252.1 -0.9 -3.1 FIG01210658: hypothetical protein compare
Xcc-8004.4699.1 -0.9 -0.9 Flagellar motor protein compare
Xcc-8004.195.1 -0.9 -0.7 phosphoesterase, putative compare
Xcc-8004.5202.1 -0.8 -1.9 Twin-arginine translocation protein TatC compare
Xcc-8004.4514.1 -0.8 -5.4 Glycosyltransferase compare
Xcc-8004.1893.1 -0.8 -3.0 Alkaline phosphatase (EC 3.1.3.1) compare
Xcc-8004.3281.1 -0.8 -2.5 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.1222.1 -0.8 -1.0 Glyoxalase family protein compare
Xcc-8004.3674.1 -0.8 -1.3 FIG01209931: hypothetical protein compare
Xcc-8004.1124.1 -0.8 -0.9 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.1601.1 -0.8 -2.9 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.1879.1 -0.8 -2.9 Septum formation protein Maf compare
Xcc-8004.130.1 -0.8 -2.4 hypothetical protein compare
Xcc-8004.2259.1 -0.8 -2.8 PhbF compare
Xcc-8004.629.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.1491.1 -0.8 -5.5 Glycosyltransferase compare
Xcc-8004.4241.1 -0.8 -1.0 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.4633.1 -0.8 -0.7 FIG01210488: hypothetical protein compare
Xcc-8004.1677.1 -0.8 -2.0 FIG01209993: hypothetical protein compare
Xcc-8004.1955.1 -0.8 -2.7 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.143.1 -0.8 -2.3 hypothetical protein compare
Xcc-8004.3590.1 -0.8 -0.7 FIG01211013: hypothetical protein compare
Xcc-8004.4478.1 -0.8 -4.6 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Xcc-8004.1890.1 -0.8 -3.0 hypothetical protein compare
Xcc-8004.4956.1 -0.8 -2.1 Cytochrome B561 compare
Xcc-8004.3752.1 -0.8 -1.1 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.3955.1 -0.8 -2.6 HflK protein compare
Xcc-8004.2386.1 -0.8 -4.8 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.3517.1 -0.8 -2.9 Oligopeptide transporter compare
Xcc-8004.576.1 -0.8 -2.0 FIG01210281: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments