Experiment set7IT079 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_00760 -4.3 -7.6 envelope stress response regulator transcription factor CpxR compare
IAI47_08085 -4.0 -4.7 helix-turn-helix domain-containing protein compare
IAI47_05420 -3.9 -2.5 PTS glucose transporter subunit IIA compare
IAI47_08705 -3.8 -8.5 carboxy terminal-processing peptidase compare
IAI47_05070 -3.6 -1.3 outer membrane protein assembly factor BamB compare
IAI47_00870 -3.5 -1.8 50S ribosomal protein L31 compare
IAI47_16995 -3.2 -3.1 protein YrbN compare
IAI47_11415 -3.2 -2.2 hypothetical protein compare
IAI47_08445 -3.1 -1.9 Holliday junction branch migration protein RuvA compare
IAI47_11480 -3.0 -3.3 hypothetical protein compare
IAI47_04800 -3.0 -1.6 RnfH family protein compare
IAI47_13695 -2.9 -1.1 colicin uptake protein TolR compare
IAI47_15635 -2.8 -3.3 RNA polymerase-binding protein DksA compare
IAI47_17020 -2.6 -4.2 30S ribosome-binding factor RbfA compare
IAI47_05090 -2.6 -4.9 hypothetical protein compare
IAI47_15970 -2.5 -3.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_20595 -2.4 -5.0 GhoT/OrtT family toxin compare
IAI47_07165 -2.4 -2.3 exodeoxyribonuclease I compare
IAI47_10320 -2.3 -1.1 Rrf2 family transcriptional regulator compare
IAI47_00465 -2.2 -3.0 ribosome-dependent GTPase TypA compare
IAI47_16085 -2.2 -1.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_08450 -2.2 -3.6 Holliday junction branch migration DNA helicase RuvB compare
IAI47_06135 -2.2 -4.1 phosphohistidine phosphatase SixA compare
IAI47_09360 -2.1 -1.5 peptide ABC transporter ATP-binding protein SapF compare
IAI47_15485 -2.1 -1.9 molecular chaperone Skp compare
IAI47_00460 -2.1 -2.8 glutamate--ammonia ligase compare
IAI47_05155 -2.0 -13.8 polyphosphate kinase 1 compare
IAI47_11375 -2.0 -1.8 hypothetical protein compare
IAI47_07350 -1.9 -1.0 hypothetical protein compare
IAI47_15595 -1.9 -2.2 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_17000 -1.7 -10.1 lipoprotein NlpI compare
IAI47_18215 -1.7 -1.8 Trk system potassium transporter TrkH compare
IAI47_18400 -1.7 -2.7 tyrosine recombinase XerC compare
IAI47_13685 -1.7 -2.3 Tol-Pal system protein TolB compare
IAI47_18145 -1.6 -2.6 elongation factor Tu compare
IAI47_07490 -1.6 -3.1 DNA-binding protein compare
IAI47_18480 -1.6 -9.1 lipid III flippase WzxE compare
IAI47_00780 -1.5 -3.6 6-phosphofructokinase compare
IAI47_00770 -1.5 -1.2 general stress protein compare
IAI47_03375 -1.5 -8.6 peptide chain release factor 3 compare
IAI47_11500 -1.5 -3.0 type VI secretion system tip protein VgrG compare
IAI47_11450 -1.5 -4.2 ankyrin repeat domain-containing protein compare
IAI47_01365 -1.5 -2.2 inorganic phosphate transporter PitA compare
IAI47_10520 -1.5 -2.7 pyridoxamine 5'-phosphate oxidase compare
IAI47_17005 -1.5 -6.5 polyribonucleotide nucleotidyltransferase compare
IAI47_21655 -1.4 -1.0 LacI family DNA-binding transcriptional regulator compare
IAI47_01475 -1.4 -7.4 MurR/RpiR family transcriptional regulator compare
IAI47_04775 -1.4 -3.5 SIR2 family protein compare
IAI47_21595 -1.4 -8.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_19945 -1.4 -0.8 hypothetical protein compare
IAI47_11310 -1.4 -3.0 redox-regulated ATPase YchF compare
IAI47_18420 -1.3 -9.6 class I adenylate cyclase compare
IAI47_10725 -1.3 -1.4 DUF1656 domain-containing protein compare
IAI47_02585 -1.3 -3.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_11445 -1.3 -4.4 ankyrin repeat domain-containing protein compare
IAI47_04865 -1.3 -1.9 SoxR-reducing system protein RseC compare
IAI47_07025 -1.3 -3.5 glycosyltransferase family 4 protein compare
IAI47_05325 -1.3 -3.0 DUF1471 domain-containing protein compare
IAI47_06245 -1.2 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_18415 -1.2 -2.1 lipoprotein compare
IAI47_14295 -1.2 -3.5 hypothetical protein compare
IAI47_08305 -1.2 -4.2 chemotaxis protein CheW compare
IAI47_08325 -1.2 -5.3 protein-glutamate O-methyltransferase CheR compare
IAI47_04835 -1.2 -6.0 ATP-dependent RNA helicase SrmB compare
IAI47_03590 -1.2 -5.7 YggT family protein compare
IAI47_08300 -1.2 -6.5 chemotaxis protein CheA compare
IAI47_09305 -1.2 -2.5 cyclic di-GMP phosphodiesterase compare
IAI47_10430 -1.2 -1.7 hypothetical protein compare
IAI47_16520 -1.2 -6.9 hypothetical protein compare
IAI47_17235 -1.2 -7.3 stringent starvation protein A compare
IAI47_07030 -1.2 -4.5 HAD family hydrolase compare
IAI47_03820 -1.2 -3.1 site-specific tyrosine recombinase XerD compare
IAI47_09235 -1.2 -1.3 type I DNA topoisomerase compare
IAI47_09635 -1.1 -3.6 hypothetical protein compare
IAI47_03550 -1.1 -7.2 membrane-bound lytic murein transglycosylase MltC compare
IAI47_09380 -1.1 -4.2 peptide ABC transporter substrate-binding protein SapA compare
IAI47_01000 -1.1 -9.1 HTH-type transcriptional regulator HdfR compare
IAI47_08440 -1.1 -1.5 crossover junction endodeoxyribonuclease RuvC compare
IAI47_07525 -1.1 -2.1 conjugal transfer protein TraD compare
IAI47_05665 -1.1 -3.3 hypothetical protein compare
IAI47_16095 -1.1 -3.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_18715 -1.1 -1.4 YibL family ribosome-associated protein compare
IAI47_02850 -1.1 -6.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_04300 -1.1 -4.7 recombinase RecA compare
IAI47_00655 -1.1 -2.7 glycosyltransferase family 4 protein compare
IAI47_00935 -1.0 -4.3 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_02600 -1.0 -6.1 FtsH protease activity modulator HflK compare
IAI47_12470 -1.0 -7.0 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_02750 -1.0 -8.4 class 1 fructose-bisphosphatase compare
IAI47_09040 -1.0 -0.8 NAD-dependent epimerase compare
IAI47_21235 -1.0 -1.7 hypothetical protein compare
IAI47_21600 -1.0 -1.8 EamA family transporter compare
IAI47_08680 -1.0 -4.4 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_21765 -1.0 -1.8 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_04110 -1.0 -8.8 two-component sensor histidine kinase BarA compare
IAI47_07450 -1.0 -1.3 winged helix-turn-helix domain-containing protein compare
IAI47_21790 -1.0 -3.4 helix-turn-helix domain-containing protein compare
IAI47_02605 -1.0 -5.9 protease modulator HflC compare
IAI47_11360 -0.9 -1.9 hypothetical protein compare
IAI47_05035 -0.9 -2.0 nucleoside-diphosphate kinase compare
IAI47_08065 -0.9 -3.1 acyltransferase compare
IAI47_08700 -0.9 -3.0 RNA chaperone ProQ compare
IAI47_18410 -0.9 -2.6 diaminopimelate epimerase compare
IAI47_09580 -0.9 -2.2 FNR family transcription factor compare
IAI47_02255 -0.9 -6.0 DUF1992 domain-containing protein compare
IAI47_11515 -0.9 -1.0 hypothetical protein compare
IAI47_05660 -0.9 -4.2 serine protease compare
IAI47_15025 -0.9 -1.6 transcriptional regulator LldR compare
IAI47_05080 -0.9 -2.9 zinc ribbon domain-containing protein compare
IAI47_13625 -0.9 -4.6 CDF family zinc transporter ZitB compare
IAI47_11065 -0.9 -3.6 excinuclease Cho compare
IAI47_04335 -0.9 -2.3 tRNA-Arg compare
IAI47_01830 -0.9 -6.4 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_00835 -0.9 -1.7 cell division protein ZapB compare
IAI47_10050 -0.9 -2.0 hypothetical protein compare
IAI47_11630 -0.8 -1.9 hypothetical protein compare
IAI47_18705 -0.8 -6.0 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_13355 -0.8 -5.4 DMT family transporter compare
IAI47_12260 -0.8 -2.6 hypothetical protein compare
IAI47_07480 -0.8 -1.1 hypothetical protein compare
IAI47_06170 -0.8 -2.4 YfcL family protein compare
IAI47_18775 -0.8 -3.9 hypothetical protein compare
IAI47_12790 -0.8 -0.5 chromosome partition protein MukE compare
IAI47_11045 -0.8 -2.8 hypothetical protein compare
IAI47_19675 -0.8 -1.5 ParD-like family protein compare
IAI47_02990 -0.8 -4.6 hypothetical protein compare
IAI47_06040 -0.8 -1.5 DNA polymerase V compare
IAI47_10185 -0.8 -2.4 PTS sugar transporter subunit IIB compare
IAI47_14205 -0.8 -4.4 hypothetical protein compare
IAI47_21670 -0.8 -4.0 LuxR family transcriptional regulator compare
IAI47_13750 -0.8 -2.3 succinate dehydrogenase iron-sulfur subunit compare
IAI47_02090 -0.8 -2.0 elongation factor Tu compare
IAI47_21545 -0.8 -5.0 SgcJ/EcaC family oxidoreductase compare
IAI47_18015 -0.8 -6.2 homoserine O-succinyltransferase compare
IAI47_18470 -0.8 -6.3 ECA oligosaccharide polymerase compare
IAI47_11550 -0.8 -1.4 hypothetical protein compare
IAI47_13740 -0.8 -0.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_01345 -0.8 -5.9 oligopeptidase A compare
IAI47_01350 -0.8 -4.8 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
IAI47_18490 -0.8 -3.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_00500 -0.8 -5.9 ATP-dependent DNA helicase RecG compare
IAI47_07510 -0.8 -2.9 hypothetical protein compare
IAI47_11420 -0.8 -1.0 hypothetical protein compare
IAI47_12925 -0.8 -2.4 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_08355 -0.8 -1.6 flagellar protein FlhE compare
IAI47_07330 -0.8 -4.3 hypothetical protein compare
IAI47_13885 -0.8 -1.0 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_11545 -0.7 -1.8 hypothetical protein compare
IAI47_17165 -0.7 -4.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_20705 -0.7 -0.7 sulfur carrier protein ThiS compare
IAI47_06030 -0.7 -3.0 hypothetical protein compare
IAI47_04695 -0.7 -3.0 hypothetical protein compare
IAI47_10545 -0.7 -1.2 hypothetical protein compare
IAI47_17155 -0.7 -4.9 calcium/sodium antiporter compare
IAI47_09770 -0.7 -2.3 osmoprotectant ABC transporter permease OsmW compare
IAI47_19825 -0.7 -3.1 EAL domain-containing protein compare
IAI47_01535 -0.7 -3.5 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_18830 -0.7 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_07455 -0.7 -2.2 hypothetical protein compare
IAI47_14805 -0.7 -3.3 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_07955 -0.7 -1.4 protein DsrB compare
IAI47_12930 -0.7 -2.2 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_01005 -0.7 -4.8 DUF413 domain-containing protein compare
IAI47_11470 -0.7 -2.2 IS1 family transposase compare
IAI47_05755 -0.7 -2.6 hypothetical protein compare
IAI47_04465 -0.7 -5.7 MFS transporter compare
IAI47_05460 -0.7 -3.2 DUF3820 family protein compare
IAI47_15155 -0.7 -2.3 DUF943 family protein compare
IAI47_17580 -0.7 -4.5 hypothetical protein compare
IAI47_12275 -0.7 -5.3 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_07470 -0.7 -1.6 AlpA family transcriptional regulator compare
IAI47_16545 -0.7 -4.4 restriction endonuclease subunit S compare
IAI47_17790 -0.7 -3.5 transposase compare
IAI47_08615 -0.7 -2.4 phage baseplate assembly protein V compare
IAI47_05690 -0.7 -2.7 hypothetical protein compare
IAI47_00375 -0.7 -6.0 ribose operon transcriptional repressor RbsR compare
IAI47_06120 -0.7 -2.2 YfcZ/YiiS family protein compare
IAI47_04750 -0.7 -1.3 hypothetical protein compare
IAI47_06980 -0.7 -1.6 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_18930 -0.7 -1.4 carboxymuconolactone decarboxylase family protein compare
IAI47_12655 -0.7 -4.5 Lon protease family protein compare
IAI47_16810 -0.7 -4.4 hypothetical protein compare
IAI47_02455 -0.7 -4.6 ribonuclease G compare
IAI47_12280 -0.7 -4.5 glucan biosynthesis protein G compare
IAI47_17385 -0.6 -1.9 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_10575 -0.6 -2.0 hypothetical protein compare
IAI47_02260 -0.6 -2.3 Zn(2+)-responsive transcriptional regulator compare
IAI47_06510 -0.6 -4.3 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI47_00430 -0.6 -4.9 DNA polymerase I compare
IAI47_12885 -0.6 -3.5 pyruvate formate lyase 1-activating protein compare
IAI47_06675 -0.6 -1.8 DUF1232 domain-containing protein compare
IAI47_12305 -0.6 -3.2 hypothetical protein compare
IAI47_00505 -0.6 -2.4 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_04895 -0.6 -1.8 pyridoxine 5'-phosphate synthase compare
IAI47_18780 -0.6 -5.0 VENN motif pre-toxin domain-containing protein compare
IAI47_07495 -0.6 -3.5 hypothetical protein compare
IAI47_20415 -0.6 -3.6 two-component system response regulator DcuR compare
IAI47_08960 -0.6 -2.3 bifunctional nicotinamidase/pyrazinamidase compare
IAI47_14945 -0.6 -1.6 pyrroline-5-carboxylate reductase compare
IAI47_04770 -0.6 -3.2 ATP-binding protein compare


Specific Phenotypes

For 2 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 across organisms