Experiment set7IT079 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50

200 most detrimental genes:

  gene name fitness t score description  
IAI47_06355 +8.4 32.0 transcriptional regulator LrhA compare
IAI47_06395 +3.0 6.3 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_00735 +2.3 1.4 protein-export chaperone SecB compare
IAI47_07885 +2.3 4.7 tRNA-Asn compare
IAI47_10925 +2.2 8.2 EAL domain-containing protein compare
IAI47_12570 +1.9 3.3 tRNA-Ser compare
IAI47_08035 +1.8 5.5 flagellar hook-basal body complex protein FliE compare
IAI47_08005 +1.7 13.0 flagellar hook-length control protein FliK compare
IAI47_08280 +1.7 11.2 flagellar transcriptional regulator FlhD compare
IAI47_12170 +1.7 11.2 flagellar basal body P-ring formation protein FlgA compare
IAI47_05525 +1.7 2.8 tRNA-Ala compare
IAI47_08285 +1.6 10.1 flagellar transcriptional regulator FlhC compare
IAI47_07990 +1.6 8.7 flagellar motor switch protein FliN compare
IAI47_06940 +1.6 2.1 tyrosine-protein kinase Wzc compare
IAI47_07995 +1.6 12.6 flagellar motor switch protein FliM compare
IAI47_08015 +1.6 11.4 flagellum-specific ATP synthase FliI compare
IAI47_00130 +1.6 10.3 LacI family DNA-binding transcriptional regulator compare
IAI47_19045 +1.6 3.0 two-component-system connector protein YcgZ compare
IAI47_08295 +1.6 12.1 flagellar motor protein MotB compare
IAI47_12165 +1.6 9.2 flagellar basal body rod protein FlgB compare
IAI47_08000 +1.5 10.7 flagellar basal body-associated protein FliL compare
IAI47_08010 +1.5 9.9 flagella biosynthesis chaperone FliJ compare
IAI47_10825 +1.5 3.5 tRNA-Val compare
IAI47_12915 +1.5 6.8 leucine-responsive transcriptional regulator Lrp compare
IAI47_08290 +1.5 10.5 flagellar motor stator protein MotA compare
IAI47_07980 +1.5 10.6 flagellar type III secretion system pore protein FliP compare
IAI47_12150 +1.5 12.3 flagellar hook protein FlgE compare
IAI47_08655 +1.5 7.3 transcriptional regulator BetI compare
IAI47_05130 +1.4 6.5 DNA-binding protein compare
IAI47_08145 +1.4 12.8 flagellin FliC compare
IAI47_08030 +1.4 11.5 flagellar M-ring protein FliF compare
IAI47_08340 +1.4 7.6 protein phosphatase CheZ compare
IAI47_07985 +1.4 7.8 flagellar biosynthetic protein FliO compare
IAI47_12160 +1.4 9.4 flagellar basal body rod protein FlgC compare
IAI47_12140 +1.4 9.6 flagellar basal-body rod protein FlgG compare
IAI47_12135 +1.4 11.7 flagellar basal body L-ring protein FlgH compare
IAI47_12145 +1.4 9.1 flagellar basal body rod protein FlgF compare
IAI47_08020 +1.4 7.9 flagellar assembly protein FliH compare
IAI47_12155 +1.4 10.7 flagellar hook assembly protein FlgD compare
IAI47_07975 +1.4 8.0 flagellar biosynthesis protein FliQ compare
IAI47_19710 +1.4 4.5 helix-turn-helix transcriptional regulator compare
IAI47_12130 +1.4 11.2 flagellar basal body P-ring protein FlgI compare
IAI47_05490 +1.3 3.7 tRNA-Val compare
IAI47_08330 +1.3 6.3 chemotaxis response regulator protein-glutamate methylesterase compare
IAI47_08345 +1.3 10.5 flagellar type III secretion system protein FlhB compare
IAI47_05000 +1.3 5.6 Fe-S cluster assembly transcriptional regulator IscR compare
IAI47_14695 +1.3 5.5 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_09245 +1.3 4.3 YmiA family putative membrane protein compare
IAI47_07970 +1.3 8.5 flagellar type III secretion system protein FliR compare
IAI47_00125 +1.3 6.2 sugar phosphate isomerase/epimerase compare
IAI47_08025 +1.3 8.3 flagellar motor switch protein FliG compare
IAI47_20715 +1.3 7.4 helix-turn-helix transcriptional regulator compare
IAI47_06390 +1.3 3.9 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_08745 +1.3 3.0 transcription antiterminator/RNA stability regulator CspE compare
IAI47_00120 +1.3 5.6 sugar kinase compare
IAI47_09395 +1.3 3.3 phage shock protein PspA compare
IAI47_09550 +1.3 5.0 hypothetical protein compare
IAI47_07250 +1.3 4.0 tRNA-Asn compare
IAI47_19875 +1.3 6.6 TetR/AcrR family transcriptional regulator compare
IAI47_13850 +1.2 3.5 LexA regulated protein compare
IAI47_12125 +1.2 9.4 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_09720 +1.2 7.0 TetR/AcrR family transcriptional regulator compare
IAI47_14680 +1.2 5.2 cytochrome o ubiquinol oxidase subunit II compare
IAI47_07550 +1.2 2.1 tRNA-Asn compare
IAI47_08160 +1.2 8.5 RNA polymerase sigma factor FliA compare
IAI47_12120 +1.2 9.9 flagellar hook-associated protein FlgK compare
IAI47_08350 +1.2 8.9 flagellar biosynthesis protein FlhA compare
IAI47_11210 +1.2 7.9 type VI secretion system-associated protein TagF compare
IAI47_13155 +1.2 1.7 H-NS histone family protein compare
IAI47_12180 +1.2 7.5 flagellar export chaperone FlgN compare
IAI47_14930 +1.2 3.4 shikimate kinase AroL compare
IAI47_05465 +1.2 4.1 bile acid:sodium symporter compare
IAI47_20505 +1.2 6.0 type II toxin-antitoxin system PrlF family antitoxin compare
IAI47_06415 +1.2 5.0 NADH-quinone oxidoreductase subunit M compare
IAI47_13925 +1.2 1.5 tRNA-Met compare
IAI47_09325 +1.1 8.3 FdhF/YdeP family oxidoreductase compare
IAI47_11220 +1.1 5.4 serine/threonine-protein phosphatase compare
IAI47_01135 +1.1 1.4 hypothetical protein compare
IAI47_15080 +1.1 4.3 cold-shock protein compare
IAI47_01750 +1.1 5.1 glycerol-3-phosphate dehydrogenase compare
IAI47_14685 +1.1 7.8 cytochrome o ubiquinol oxidase subunit I compare
IAI47_12115 +1.0 7.6 flagellar hook-associated protein FlgL compare
IAI47_06455 +1.0 4.4 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_16600 +1.0 2.9 tRNA-OTHER compare
IAI47_06790 +1.0 4.6 alkyl hydroperoxide reductase subunit C compare
IAI47_08140 +1.0 8.6 flagellar filament capping protein FliD compare
IAI47_20630 +1.0 5.4 DUF2534 family protein compare
IAI47_05520 +1.0 1.6 tRNA-Ala compare
IAI47_08465 +1.0 5.0 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_11760 +1.0 1.6 TonB-dependent siderophore receptor compare
IAI47_04450 +1.0 1.3 tRNA-Ala compare
IAI47_02515 +1.0 3.0 transcriptional regulator ArgR compare
IAI47_11215 +1.0 7.2 type VI secretion system-associated FHA domain protein TagH compare
IAI47_05435 +1.0 3.7 hypothetical protein compare
IAI47_00085 +1.0 6.2 class II glutamine amidotransferase compare
IAI47_08740 +1.0 3.2 DUF2627 domain-containing protein compare
IAI47_20005 +1.0 3.3 PTS sugar transporter subunit IIA compare
IAI47_13185 +0.9 6.1 outer membrane protein OmpX compare
IAI47_09860 +0.9 3.2 RES family NAD+ phosphorylase compare
IAI47_14700 +0.9 6.1 protoheme IX farnesyltransferase compare
IAI47_05065 +0.9 3.9 YfgM family protein compare
IAI47_15725 +0.9 4.1 DeoR/GlpR transcriptional regulator compare
IAI47_08135 +0.9 6.3 flagellar export chaperone FliS compare
IAI47_00925 +0.9 1.6 hypothetical protein compare
IAI47_07020 +0.8 1.3 hypothetical protein compare
IAI47_18595 +0.8 6.2 endoglucanase compare
IAI47_05780 +0.8 4.8 hypothetical protein compare
IAI47_13305 +0.8 4.2 helix-turn-helix transcriptional regulator compare
IAI47_19780 +0.8 3.4 TetR/AcrR family transcriptional regulator compare
IAI47_21035 +0.8 2.4 TetR/AcrR family transcriptional regulator compare
IAI47_06420 +0.8 3.1 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_20550 +0.8 3.2 ABC transporter permease compare
IAI47_20850 +0.8 2.4 TetR/AcrR family transcriptional regulator compare
IAI47_11765 +0.8 2.8 GlsB/YeaQ/YmgE family stress response membrane protein compare
IAI47_09265 +0.8 3.3 LapA family protein compare
IAI47_09755 +0.8 4.0 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_17775 +0.8 5.3 YjcB family protein compare
IAI47_15975 +0.8 3.5 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_12760 +0.8 5.1 porin OmpF compare
IAI47_10680 +0.8 4.4 TetR/AcrR family transcriptional regulator compare
IAI47_09795 +0.8 2.4 DUF1283 family protein compare
IAI47_06625 +0.8 4.3 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_12110 +0.8 1.7 ribonuclease E compare
IAI47_10720 +0.8 3.2 transcriptional regulator SlyA compare
IAI47_19430 +0.8 2.4 GNAT family N-acetyltransferase compare
IAI47_18920 +0.7 3.3 TetR/AcrR family transcriptional regulator compare
IAI47_08710 +0.7 4.2 protease HtpX compare
IAI47_19140 +0.7 3.8 helix-turn-helix transcriptional regulator compare
IAI47_09970 +0.7 3.8 DeoR/GlpR transcriptional regulator compare
IAI47_17910 +0.7 2.1 chorismate lyase compare
IAI47_14705 +0.7 4.1 MFS transporter compare
IAI47_13690 +0.7 0.4 cell envelope integrity protein TolA compare
IAI47_10225 +0.7 2.2 pyrroloquinoline quinone precursor peptide PqqA compare
IAI47_05580 +0.7 1.0 membrane protein YpdK compare
IAI47_14910 +0.7 3.8 recombination-associated protein RdgC compare
IAI47_00730 +0.7 1.6 glutaredoxin 3 compare
IAI47_20755 +0.7 4.0 methionine synthase compare
IAI47_08430 +0.7 2.0 dihydroneopterin triphosphate diphosphatase compare
IAI47_07895 +0.7 4.5 hypothetical protein compare
IAI47_12420 +0.7 3.2 hypothetical protein compare
IAI47_05775 +0.7 3.4 type II toxin-antitoxin system MqsA family antitoxin compare
IAI47_03150 +0.7 4.6 3',5'-cyclic-AMP phosphodiesterase compare
IAI47_11610 +0.7 4.0 serine/threonine-protein phosphatase compare
IAI47_09230 +0.7 3.0 YciN family protein compare
IAI47_20840 +0.7 2.3 Lrp/AsnC family transcriptional regulator compare
IAI47_05770 +0.7 1.7 hypothetical protein compare
IAI47_12085 +0.7 3.0 phosphate acyltransferase PlsX compare
IAI47_14020 +0.7 2.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_15815 +0.7 2.8 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
IAI47_07540 +0.7 4.4 hypothetical protein compare
IAI47_16220 +0.7 2.7 thr operon leader peptide compare
IAI47_03620 +0.7 4.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
IAI47_13310 +0.6 2.6 MerR family transcriptional regulator compare
IAI47_06905 +0.6 3.2 uridine kinase compare
IAI47_09020 +0.6 4.4 patatin-like phospholipase RssA compare
IAI47_00765 +0.6 4.0 cell-envelope stress modulator CpxP compare
IAI47_14015 +0.6 3.4 ribosome silencing factor compare
IAI47_06480 +0.6 4.6 phosphotransferase RcsD compare
IAI47_11690 +0.6 2.5 type VI secretion system baseplate subunit TssK compare
IAI47_06680 +0.6 2.4 LysR family transcriptional regulator compare
IAI47_21665 +0.6 0.7 DUF333 domain-containing protein compare
IAI47_10285 +0.6 3.8 SrfC compare
IAI47_07000 +0.6 3.8 UDP-glucose 4-epimerase GalE compare
IAI47_15995 +0.6 1.2 leu operon leader peptide compare
IAI47_11190 +0.6 2.3 nitrate- and nitrite sensing domain-containing protein compare
IAI47_11585 +0.6 3.4 type VI secretion system baseplate subunit TssG compare
IAI47_20030 +0.6 3.0 ABC transporter substrate-binding protein compare
IAI47_17050 +0.6 2.9 preprotein translocase subunit SecG compare
IAI47_06570 +0.6 3.7 nucleoid-associated protein YejK compare
IAI47_03750 +0.6 4.0 Xaa-Pro aminopeptidase compare
IAI47_21635 +0.6 2.9 hypothetical protein compare
IAI47_09125 +0.6 2.7 YciI family protein compare
IAI47_02350 +0.6 0.9 tRNA-Thr compare
IAI47_06055 +0.6 1.7 tRNA-Arg compare
IAI47_13935 +0.6 0.9 tRNA-Gln compare
IAI47_06780 +0.6 3.4 iron-sulfur cluster carrier protein ApbC compare
IAI47_09390 +0.6 3.0 phage shock protein operon transcriptional activator compare
IAI47_11740 +0.6 3.3 hypothetical protein compare
IAI47_12435 +0.6 1.5 hypothetical protein compare
IAI47_06320 +0.6 3.3 phosphate acetyltransferase compare
IAI47_15140 +0.6 2.0 xanthine phosphoribosyltransferase compare
IAI47_05865 +0.6 3.5 hypothetical protein compare
IAI47_14665 +0.6 3.6 transcriptional regulator BolA compare
IAI47_17560 +0.6 0.6 ROK family transcriptional regulator compare
IAI47_06475 +0.6 2.5 transcriptional regulator RcsB compare
IAI47_03920 +0.6 4.7 phosphoenolpyruvate--protein phosphotransferase compare
IAI47_10455 +0.6 1.8 electron transport complex subunit RsxC compare
IAI47_10275 +0.6 4.1 hypothetical protein compare
IAI47_18840 +0.6 1.9 membrane protein insertion efficiency factor YidD compare
IAI47_18065 +0.6 2.4 deoxyribonuclease V compare
IAI47_17895 +0.6 3.3 diacylglycerol kinase compare
IAI47_17975 +0.6 2.2 YjbF family lipoprotein compare
IAI47_10990 +0.6 4.2 DUF481 domain-containing protein compare
IAI47_07195 +0.6 3.3 PhnD/SsuA/transferrin family substrate-binding protein compare
IAI47_05425 +0.5 2.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_06410 +0.5 2.6 NADH-quinone oxidoreductase subunit L compare
IAI47_16015 +0.5 1.9 3-isopropylmalate dehydratase small subunit compare
IAI47_05270 +0.5 3.7 outer membrane protein assembly factor BamC compare
IAI47_20760 +0.5 3.0 DUF1852 domain-containing protein compare
IAI47_00290 +0.5 2.9 F0F1 ATP synthase subunit I compare


Specific Phenotypes

For 2 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 across organisms