Experiment set7IT078 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3041.1 -3.3 -4.3 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.2182.1 -3.1 -15.8 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2921.1 -3.0 -4.0 ferrous iron transport protein compare
Xcc-8004.3976.1 -2.9 -3.6 2-methylaconitate cis-trans isomerase compare
Xcc-8004.4620.1 -2.9 -8.2 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2923.1 -2.8 -10.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.4945.1 -2.8 -1.3 FIG01210349: hypothetical protein compare
Xcc-8004.3211.1 -2.7 -2.7 protein of unknown function DUF88 compare
Xcc-8004.2334.1 -2.7 -8.4 Transport ATP-binding protein CydD compare
Xcc-8004.3322.1 -2.6 -2.1 FIG01211446: hypothetical protein compare
Xcc-8004.574.1 -2.5 -8.1 Di-/tripeptide transporter compare
Xcc-8004.1372.1 -2.5 -1.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2922.1 -2.5 -2.4 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1241.1 -2.5 -3.9 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.1365.1 -2.3 -1.7 FIG01211058: hypothetical protein compare
Xcc-8004.2110.1 -2.3 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3979.1 -2.3 -6.7 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2652.1 -2.2 -2.7 response regulator compare
Xcc-8004.1615.1 -2.2 -2.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1359.1 -2.1 -6.5 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.288.1 -2.1 -1.7 Ferredoxin compare
Xcc-8004.130.1 -2.1 -5.8 hypothetical protein compare
Xcc-8004.1651.1 -2.0 -7.9 putative Cytochrome bd2, subunit I compare
Xcc-8004.5268.1 -2.0 -2.1 Mobile element protein compare
Xcc-8004.1652.1 -2.0 -6.5 putative Cytochrome bd2, subunit II compare
Xcc-8004.4024.1 -1.9 -5.1 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.3728.1 -1.9 -1.4 hypothetical protein compare
Xcc-8004.2346.1 -1.9 -2.6 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.99.1 -1.9 -1.6 FIG01211055: hypothetical protein compare
Xcc-8004.5334.1 -1.8 -2.3 hypothetical protein compare
Xcc-8004.2335.1 -1.8 -3.5 Transport ATP-binding protein CydC compare
Xcc-8004.3310.1 -1.8 -4.6 Chromosome partition protein smc compare
Xcc-8004.2169.1 -1.8 -3.2 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1841.1 -1.7 -3.8 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.3576.1 -1.7 -6.4 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.3320.1 -1.7 -1.6 FIG01209869: hypothetical protein compare
Xcc-8004.3040.1 -1.7 -2.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.3479.1 -1.7 -2.3 aklaviketone reductase compare
Xcc-8004.601.1 -1.7 -5.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.127.1 -1.7 -1.9 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.957.1 -1.7 -3.3 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.4499.1 -1.6 -2.1 Mobile element protein compare
Xcc-8004.4596.1 -1.6 -6.1 hypothetical protein compare
Xcc-8004.4221.1 -1.6 -4.0 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.3321.1 -1.6 -2.2 FIG01209847: hypothetical protein compare
Xcc-8004.5343.1 -1.6 -5.7 hypothetical protein compare
Xcc-8004.1236.1 -1.6 -3.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3655.1 -1.6 -1.7 FIG01210025: hypothetical protein compare
Xcc-8004.4329.1 -1.5 -1.6 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.4039.1 -1.5 -2.6 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2343.1 -1.5 -2.0 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3742.1 -1.5 -1.5 Type III effector compare
Xcc-8004.4200.1 -1.5 -2.3 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.318.1 -1.5 -4.6 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.1871.1 -1.5 -3.3 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.4046.1 -1.4 -6.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3346.1 -1.4 -2.8 hypothetical protein compare
Xcc-8004.1720.1 -1.4 -3.1 UPF0301 protein YqgE compare
Xcc-8004.4558.1 -1.4 -1.6 ABC transporter permease compare
Xcc-8004.4371.1 -1.4 -2.6 rRNA small subunit methyltransferase I compare
Xcc-8004.1162.1 -1.4 -1.8 FIG01210644: hypothetical protein compare
Xcc-8004.3395.1 -1.4 -2.3 Transcriptional regulator, GntR family compare
Xcc-8004.4810.1 -1.4 -5.1 hypothetical protein compare
Xcc-8004.1880.1 -1.4 -5.6 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.713.1 -1.4 -1.0 FIG01210186: hypothetical protein compare
Xcc-8004.3954.1 -1.4 -3.3 HflC protein compare
Xcc-8004.4984.1 -1.4 -2.6 hypothetical protein compare
Xcc-8004.1118.1 -1.3 -1.5 hypothetical protein compare
Xcc-8004.3647.1 -1.3 -3.3 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.3595.1 -1.3 -1.7 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.2924.1 -1.3 -3.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.876.1 -1.3 -1.3 Mobile element protein compare
Xcc-8004.421.1 -1.3 -2.2 Xanthomonadin biosynthesis related protein compare
Xcc-8004.5203.1 -1.3 -1.1 Twin-arginine translocation protein TatB compare
Xcc-8004.3737.1 -1.3 -2.0 hypothetical protein compare
Xcc-8004.1228.1 -1.3 -4.4 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.1839.1 -1.2 -1.5 FIG01210863: hypothetical protein compare
Xcc-8004.629.1 -1.2 -1.6 hypothetical protein compare
Xcc-8004.1249.1 -1.2 -4.2 Transcriptional regulator compare
Xcc-8004.2401.1 -1.2 -1.0 FIG00545367: hypothetical protein compare
Xcc-8004.321.1 -1.2 -7.2 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.3208.1 -1.2 -1.1 Methyltransferase type 12 compare
Xcc-8004.319.1 -1.2 -5.6 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.5082.1 -1.2 -2.5 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Xcc-8004.2357.1 -1.2 -3.1 Segregation and condensation protein B compare
Xcc-8004.623.1 -1.2 -1.4 Phosphoserine phosphatase compare
Xcc-8004.4013.1 -1.1 -1.8 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.3855.1 -1.1 -3.6 FIG01209965: hypothetical protein compare
Xcc-8004.2920.1 -1.1 -4.5 Ferrous iron transport protein B compare
Xcc-8004.1437.1 -1.1 -3.7 Kup system potassium uptake protein compare
Xcc-8004.3365.1 -1.1 -2.9 FIG01209831: hypothetical protein compare
Xcc-8004.2910.1 -1.1 -4.7 Regulatory protein, RpfE type compare
Xcc-8004.4954.1 -1.1 -4.5 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.1790.1 -1.1 -1.9 Zinc uptake regulation protein ZUR compare
Xcc-8004.1380.1 -1.1 -1.6 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.3230.1 -1.1 -1.9 Phage DNA invertase compare
Xcc-8004.2228.1 -1.1 -3.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.4285.1 -1.1 -5.7 two-component system sensor protein compare
Xcc-8004.1818.1 -1.1 -1.2 FIG00554193: hypothetical protein compare
Xcc-8004.3955.1 -1.1 -3.3 HflK protein compare
Xcc-8004.3108.1 -1.1 -2.5 Regulatory protein RecX compare
Xcc-8004.3385.1 -1.1 -2.8 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.2229.1 -1.0 -4.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.3721.1 -1.0 -1.1 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.1502.1 -1.0 -1.4 twitching motility protein PilG compare
Xcc-8004.4976.1 -1.0 -6.2 hypothetical protein compare
Xcc-8004.3903.1 -1.0 -2.0 Mlr6856 protein compare
Xcc-8004.645.1 -1.0 -1.2 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.3612.1 -1.0 -1.1 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.3687.1 -1.0 -3.0 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.1621.1 -1.0 -3.7 FIG01213569: hypothetical protein compare
Xcc-8004.559.1 -1.0 -1.5 FIG01213048: hypothetical protein compare
Xcc-8004.2935.1 -1.0 -7.0 Amino acid transporters compare
Xcc-8004.5185.1 -1.0 -1.3 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.2833.1 -1.0 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.5098.1 -1.0 -1.9 hypothetical protein compare
Xcc-8004.4694.1 -1.0 -2.2 FIG01210824: hypothetical protein compare
Xcc-8004.3690.1 -1.0 -5.7 Transcriptional regulator, XRE family protein compare
Xcc-8004.1718.1 -0.9 -1.2 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.1630.1 -0.9 -2.4 hypothetical protein compare
Xcc-8004.5114.1 -0.9 -3.9 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.4251.1 -0.9 -2.2 hypothetical protein compare
Xcc-8004.2230.1 -0.9 -2.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.659.1 -0.9 -1.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1961.1 -0.9 -1.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.5368.1 -0.9 -2.3 FIG01210868: hypothetical protein compare
Xcc-8004.270.1 -0.9 -3.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3473.1 -0.9 -1.2 FIG01213437: hypothetical protein compare
Xcc-8004.500.1 -0.9 -1.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.1601.1 -0.9 -3.4 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.4672.1 -0.9 -1.6 hypothetical protein compare
Xcc-8004.1768.1 -0.9 -1.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.3685.1 -0.9 -1.9 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Xcc-8004.2672.1 -0.9 -1.6 hypothetical protein compare
Xcc-8004.2339.1 -0.9 -0.8 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.565.1 -0.9 -3.0 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.1705.1 -0.9 -1.4 FIG01209877: hypothetical protein compare
Xcc-8004.2215.1 -0.9 -0.8 hypothetical protein compare
Xcc-8004.4731.1 -0.9 -1.9 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Xcc-8004.2614.1 -0.9 -1.3 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3783.1 -0.9 -3.8 Two-component system sensor protein compare
Xcc-8004.2383.1 -0.9 -1.5 FIG01211288: hypothetical protein compare
Xcc-8004.337.1 -0.9 -1.8 ATPase, AFG1 family compare
Xcc-8004.2259.1 -0.9 -2.7 PhbF compare
Xcc-8004.1955.1 -0.9 -3.6 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1400.1 -0.9 -1.3 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.5024.1 -0.9 -3.0 FIG01210241: hypothetical protein compare
Xcc-8004.4993.1 -0.9 -2.8 hypothetical protein compare
Xcc-8004.255.1 -0.9 -2.5 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) compare
Xcc-8004.1933.1 -0.8 -1.1 FIG01209679: hypothetical protein compare
Xcc-8004.3016.1 -0.8 -2.6 hypothetical protein compare
Xcc-8004.1334.1 -0.8 -1.0 hypothetical protein compare
Xcc-8004.4829.1 -0.8 -1.6 Transamidase GatB domain protein compare
Xcc-8004.2277.1 -0.8 -2.8 FIG01211504: hypothetical protein compare
Xcc-8004.5125.1 -0.8 -2.0 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.3426.1 -0.8 -2.5 Chaperone protein DnaJ compare
Xcc-8004.1138.1 -0.8 -2.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.3674.1 -0.8 -1.2 FIG01209931: hypothetical protein compare
Xcc-8004.1725.1 -0.8 -2.1 Phenazine biosynthesis protein PhzF like compare
Xcc-8004.2411.1 -0.8 -2.8 Small-conductance mechanosensitive channel compare
Xcc-8004.2385.1 -0.8 -4.6 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.93.1 -0.8 -2.3 FIG01211857: hypothetical protein compare
Xcc-8004.4391.1 -0.8 -2.8 hypothetical protein compare
Xcc-8004.3049.1 -0.8 -3.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.4661.1 -0.8 -2.3 Protein YciE compare
Xcc-8004.471.1 -0.8 -1.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.4239.1 -0.8 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4227.1 -0.8 -1.8 ThiJ/PfpI family protein compare
Xcc-8004.2865.1 -0.8 -1.0 FIG01210234: hypothetical protein compare
Xcc-8004.4788.1 -0.8 -0.9 FIG01210406: hypothetical protein compare
Xcc-8004.5224.1 -0.8 -1.5 bleomycin resistance protein compare
Xcc-8004.3451.1 -0.8 -1.3 hypothetical protein compare
Xcc-8004.1164.1 -0.8 -0.7 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.3733.1 -0.8 -1.5 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Xcc-8004.3663.1 -0.8 -1.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.1243.1 -0.8 -3.0 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.4517.1 -0.8 -4.3 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.1636.1 -0.8 -2.6 hypothetical protein compare
Xcc-8004.3281.1 -0.8 -3.0 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.1896.1 -0.8 -1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1244.1 -0.8 -3.4 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.1873.1 -0.8 -1.5 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.4478.1 -0.8 -5.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Xcc-8004.622.1 -0.8 -1.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.5073.1 -0.8 -1.7 FIG01210860: hypothetical protein compare
Xcc-8004.4501.1 -0.8 -3.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.2213.1 -0.8 -2.2 FIG01210598: hypothetical protein compare
Xcc-8004.4025.1 -0.8 -5.1 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.402.1 -0.8 -1.7 FIG01209770: hypothetical protein compare
Xcc-8004.144.1 -0.8 -1.9 Putative protein-S-isoprenylcysteine methyltransferase compare
Xcc-8004.2372.1 -0.8 -2.7 Pheromone shutdown protein compare
Xcc-8004.4457.1 -0.7 -1.7 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.4368.1 -0.7 -1.1 FIG01209977: hypothetical protein compare
Xcc-8004.336.1 -0.7 -2.8 Alpha/beta hydrolase compare
Xcc-8004.571.1 -0.7 -4.1 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Xcc-8004.4523.1 -0.7 -1.8 Type II secretion system protein-like protein compare
Xcc-8004.3686.1 -0.7 -2.5 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.4653.1 -0.7 -5.1 amino acid transporter compare
Xcc-8004.983.1 -0.7 -1.4 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.4377.1 -0.7 -2.0 putative; ORF located using Glimmer/Genemark compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments