Experiment set7IT078 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -4.6 -3.5 Tol-Pal system protein TolB compare
IAI47_11375 -4.4 -3.0 hypothetical protein compare
IAI47_00760 -4.2 -7.5 envelope stress response regulator transcription factor CpxR compare
IAI47_08085 -4.2 -5.0 helix-turn-helix domain-containing protein compare
IAI47_08705 -4.2 -7.6 carboxy terminal-processing peptidase compare
IAI47_09040 -4.1 -2.7 NAD-dependent epimerase compare
IAI47_05070 -3.7 -1.4 outer membrane protein assembly factor BamB compare
IAI47_16995 -3.5 -3.4 protein YrbN compare
IAI47_00300 -3.3 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_08450 -3.2 -3.1 Holliday junction branch migration DNA helicase RuvB compare
IAI47_18400 -3.1 -3.0 tyrosine recombinase XerC compare
IAI47_15485 -3.1 -1.9 molecular chaperone Skp compare
IAI47_16085 -3.0 -2.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_09360 -2.5 -1.7 peptide ABC transporter ATP-binding protein SapF compare
IAI47_10835 -2.4 -1.3 tRNA-Val compare
IAI47_00465 -2.4 -2.3 ribosome-dependent GTPase TypA compare
IAI47_17000 -2.3 -13.0 lipoprotein NlpI compare
IAI47_00655 -2.3 -5.7 glycosyltransferase family 4 protein compare
IAI47_05195 -2.2 -3.7 DnaA inactivator Hda compare
IAI47_18215 -2.2 -2.0 Trk system potassium transporter TrkH compare
IAI47_05090 -2.1 -3.9 hypothetical protein compare
IAI47_15970 -2.1 -3.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_21765 -2.0 -2.2 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_00780 -2.0 -5.1 6-phosphofructokinase compare
IAI47_00460 -2.0 -2.7 glutamate--ammonia ligase compare
IAI47_15635 -2.0 -3.7 RNA polymerase-binding protein DksA compare
IAI47_13690 -1.9 -0.7 cell envelope integrity protein TolA compare
IAI47_12925 -1.9 -4.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_05155 -1.9 -13.5 polyphosphate kinase 1 compare
IAI47_05035 -1.8 -3.0 nucleoside-diphosphate kinase compare
IAI47_18830 -1.8 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_12790 -1.7 -0.9 chromosome partition protein MukE compare
IAI47_11450 -1.7 -4.7 ankyrin repeat domain-containing protein compare
IAI47_08700 -1.7 -5.4 RNA chaperone ProQ compare
IAI47_09580 -1.7 -3.3 FNR family transcription factor compare
IAI47_19945 -1.7 -1.1 hypothetical protein compare
IAI47_11420 -1.6 -2.3 hypothetical protein compare
IAI47_18480 -1.6 -8.7 lipid III flippase WzxE compare
IAI47_17005 -1.6 -6.7 polyribonucleotide nucleotidyltransferase compare
IAI47_03375 -1.6 -8.7 peptide chain release factor 3 compare
IAI47_11310 -1.6 -3.4 redox-regulated ATPase YchF compare
IAI47_11515 -1.5 -1.8 hypothetical protein compare
IAI47_10840 -1.5 -3.7 pyruvate kinase PykF compare
IAI47_07165 -1.5 -2.0 exodeoxyribonuclease I compare
IAI47_06655 -1.5 -2.8 1-phosphofructokinase compare
IAI47_15595 -1.5 -1.5 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_11415 -1.5 -1.8 hypothetical protein compare
IAI47_17020 -1.5 -2.0 30S ribosome-binding factor RbfA compare
IAI47_08445 -1.5 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_01475 -1.3 -7.5 MurR/RpiR family transcriptional regulator compare
IAI47_20595 -1.3 -3.0 GhoT/OrtT family toxin compare
IAI47_12930 -1.3 -3.2 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_21655 -1.3 -1.0 LacI family DNA-binding transcriptional regulator compare
IAI47_03820 -1.3 -2.7 site-specific tyrosine recombinase XerD compare
IAI47_18420 -1.3 -8.9 class I adenylate cyclase compare
IAI47_09855 -1.3 -3.0 DUF2384 domain-containing protein compare
IAI47_11360 -1.3 -1.9 hypothetical protein compare
IAI47_12275 -1.3 -9.7 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_09235 -1.3 -1.7 type I DNA topoisomerase compare
IAI47_07025 -1.2 -3.5 glycosyltransferase family 4 protein compare
IAI47_14325 -1.2 -1.6 ribosome-associated protein YbcJ compare
IAI47_02400 -1.2 -1.6 YhdT family protein compare
IAI47_21595 -1.2 -7.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_13700 -1.2 -2.9 Tol-Pal system protein TolQ compare
IAI47_18490 -1.2 -4.4 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_07480 -1.1 -2.0 hypothetical protein compare
IAI47_12885 -1.1 -5.8 pyruvate formate lyase 1-activating protein compare
IAI47_00835 -1.1 -2.7 cell division protein ZapB compare
IAI47_05745 -1.1 -1.0 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_07380 -1.1 -3.3 ABC transporter ATP-binding protein compare
IAI47_04300 -1.1 -4.8 recombinase RecA compare
IAI47_15155 -1.1 -3.8 DUF943 family protein compare
IAI47_21665 -1.1 -1.3 DUF333 domain-containing protein compare
IAI47_17965 -1.1 -5.6 glucose-6-phosphate isomerase compare
IAI47_16095 -1.1 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_19685 -1.1 -2.6 hypothetical protein compare
IAI47_12280 -1.1 -7.1 glucan biosynthesis protein G compare
IAI47_14295 -1.1 -2.7 hypothetical protein compare
IAI47_13750 -1.1 -3.3 succinate dehydrogenase iron-sulfur subunit compare
IAI47_11550 -1.1 -1.7 hypothetical protein compare
IAI47_03440 -1.0 -2.8 general stress protein compare
IAI47_12880 -1.0 -8.0 formate C-acetyltransferase compare
IAI47_06135 -1.0 -2.4 phosphohistidine phosphatase SixA compare
IAI47_02750 -1.0 -8.4 class 1 fructose-bisphosphatase compare
IAI47_12470 -1.0 -7.2 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_01000 -1.0 -7.9 HTH-type transcriptional regulator HdfR compare
IAI47_13765 -1.0 -2.0 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_18240 -1.0 -2.2 NAD(P)H-flavin reductase compare
IAI47_06385 -1.0 -2.9 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_11480 -1.0 -1.7 hypothetical protein compare
IAI47_00735 -1.0 -1.6 protein-export chaperone SecB compare
IAI47_14470 -1.0 -1.7 YbaB/EbfC family nucleoid-associated protein compare
IAI47_11500 -1.0 -2.3 type VI secretion system tip protein VgrG compare
IAI47_11445 -1.0 -3.8 ankyrin repeat domain-containing protein compare
IAI47_04835 -1.0 -5.2 ATP-dependent RNA helicase SrmB compare
IAI47_09055 -1.0 -6.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_17235 -1.0 -5.9 stringent starvation protein A compare
IAI47_21155 -0.9 -2.3 IS6 family transposase compare
IAI47_11470 -0.9 -2.5 IS1 family transposase compare
IAI47_12305 -0.9 -5.0 hypothetical protein compare
IAI47_00875 -0.9 -1.3 met regulon transcriptional regulator MetJ compare
IAI47_07905 -0.9 -0.6 Arc family DNA-binding protein compare
IAI47_05660 -0.9 -4.5 serine protease compare
IAI47_18775 -0.9 -3.8 hypothetical protein compare
IAI47_18705 -0.9 -6.5 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_08335 -0.9 -4.2 chemotaxis response regulator CheY compare
IAI47_09635 -0.9 -3.1 hypothetical protein compare
IAI47_11655 -0.9 -1.9 hypothetical protein compare
IAI47_09305 -0.9 -2.1 cyclic di-GMP phosphodiesterase compare
IAI47_11510 -0.9 -2.5 hypothetical protein compare
IAI47_18530 -0.9 -1.8 thioredoxin TrxA compare
IAI47_02600 -0.9 -5.9 FtsH protease activity modulator HflK compare
IAI47_13950 -0.9 -1.0 PhoH family protein compare
IAI47_17155 -0.9 -6.2 calcium/sodium antiporter compare
IAI47_18470 -0.8 -6.8 ECA oligosaccharide polymerase compare
IAI47_20600 -0.8 -1.7 hypothetical protein compare
IAI47_13840 -0.8 -2.3 replication initiation negative regulator SeqA compare
IAI47_12920 -0.8 -2.5 thioredoxin-disulfide reductase compare
IAI47_17120 -0.8 -2.4 BolA family iron metabolism protein IbaG compare
IAI47_10430 -0.8 -1.8 hypothetical protein compare
IAI47_21600 -0.8 -1.3 EamA family transporter compare
IAI47_08680 -0.8 -3.4 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_00505 -0.8 -3.8 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_00500 -0.8 -6.1 ATP-dependent DNA helicase RecG compare
IAI47_20705 -0.8 -0.9 sulfur carrier protein ThiS compare
IAI47_16520 -0.8 -5.4 hypothetical protein compare
IAI47_10845 -0.8 -2.0 major outer membrane lipoprotein compare
IAI47_08305 -0.8 -3.3 chemotaxis protein CheW compare
IAI47_02380 -0.8 -1.7 DNA-binding transcriptional regulator Fis compare
IAI47_00375 -0.8 -6.9 ribose operon transcriptional repressor RbsR compare
IAI47_10520 -0.8 -1.9 pyridoxamine 5'-phosphate oxidase compare
IAI47_17035 -0.8 -1.6 ribosome maturation factor RimP compare
IAI47_04110 -0.8 -7.1 two-component sensor histidine kinase BarA compare
IAI47_07475 -0.8 -0.4 hypothetical protein compare
IAI47_07455 -0.8 -2.4 hypothetical protein compare
IAI47_01830 -0.8 -6.0 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_13885 -0.8 -1.3 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_13065 -0.8 -1.4 DUF1418 family protein compare
IAI47_02090 -0.7 -2.6 elongation factor Tu compare
IAI47_07490 -0.7 -1.1 DNA-binding protein compare
IAI47_12645 -0.7 -2.2 porin OmpA compare
IAI47_06235 -0.7 -3.6 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_06245 -0.7 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_06030 -0.7 -2.5 hypothetical protein compare
IAI47_00430 -0.7 -5.7 DNA polymerase I compare
IAI47_07470 -0.7 -1.4 AlpA family transcriptional regulator compare
IAI47_02605 -0.7 -4.5 protease modulator HflC compare
IAI47_11635 -0.7 -1.8 hypothetical protein compare
IAI47_12865 -0.7 -4.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_07030 -0.7 -2.7 HAD family hydrolase compare
IAI47_11475 -0.7 -0.5 hypothetical protein compare
IAI47_08055 -0.7 -3.1 lysis protein compare
IAI47_13760 -0.7 -1.8 succinate dehydrogenase membrane anchor subunit compare
IAI47_18055 -0.7 -2.9 DNA-binding protein HU-alpha compare
IAI47_17385 -0.7 -2.4 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_13625 -0.7 -4.2 CDF family zinc transporter ZitB compare
IAI47_21545 -0.7 -4.6 SgcJ/EcaC family oxidoreductase compare
IAI47_03550 -0.7 -5.3 membrane-bound lytic murein transglycosylase MltC compare
IAI47_02040 -0.7 -3.3 peptidylprolyl isomerase compare
IAI47_12655 -0.7 -4.6 Lon protease family protein compare
IAI47_03295 -0.7 -3.5 cupin domain-containing protein compare
IAI47_07510 -0.7 -3.0 hypothetical protein compare
IAI47_17560 -0.7 -0.8 ROK family transcriptional regulator compare
IAI47_01005 -0.7 -4.9 DUF413 domain-containing protein compare
IAI47_16080 -0.7 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_07355 -0.7 -2.8 winged helix-turn-helix domain-containing protein compare
IAI47_04800 -0.7 -0.7 RnfH family protein compare
IAI47_11950 -0.7 -3.5 NAD-dependent protein deacylase compare
IAI47_20680 -0.7 -2.3 hypothetical protein compare
IAI47_07180 -0.7 -3.3 DUF496 family protein compare
IAI47_09380 -0.7 -3.3 peptide ABC transporter substrate-binding protein SapA compare
IAI47_03590 -0.7 -3.7 YggT family protein compare
IAI47_03135 -0.7 -3.5 outer membrane channel protein TolC compare
IAI47_18770 -0.7 -2.4 type I addiction module toxin, SymE family compare
IAI47_12650 -0.7 -2.7 macrodomain Ter protein MatP compare
IAI47_03680 -0.7 -4.5 transketolase compare
IAI47_15605 -0.7 -0.8 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_10725 -0.7 -1.3 DUF1656 domain-containing protein compare
IAI47_20415 -0.7 -3.9 two-component system response regulator DcuR compare
IAI47_19380 -0.7 -1.8 hypothetical protein compare
IAI47_20480 -0.7 -3.3 YfiR family protein compare
IAI47_17900 -0.6 -1.0 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_01530 -0.6 -2.9 DUF1145 family protein compare
IAI47_01345 -0.6 -4.8 oligopeptidase A compare
IAI47_02255 -0.6 -4.3 DUF1992 domain-containing protein compare
IAI47_16840 -0.6 -3.6 carbamate kinase compare
IAI47_08440 -0.6 -1.2 crossover junction endodeoxyribonuclease RuvC compare
IAI47_02260 -0.6 -2.5 Zn(2+)-responsive transcriptional regulator compare
IAI47_21670 -0.6 -2.6 LuxR family transcriptional regulator compare
IAI47_04830 -0.6 -2.2 autonomous glycyl radical cofactor GrcA compare
IAI47_03400 -0.6 -2.8 deoxyribose-phosphate aldolase compare
IAI47_14230 -0.6 -2.7 DotU family type IV/VI secretion system protein compare
IAI47_15150 -0.6 -3.5 DUF3289 family protein compare
IAI47_17165 -0.6 -4.3 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_14555 -0.6 -1.6 hemolysin expression modulator Hha compare
IAI47_05425 -0.6 -2.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_15235 -0.6 -2.1 hydroxyisourate hydrolase compare
IAI47_13710 -0.6 -2.3 cyd operon protein YbgE compare
IAI47_09920 -0.6 -4.5 FUSC family protein compare
IAI47_04465 -0.6 -4.8 MFS transporter compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 across organisms