Experiment set7IT077 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4039.1 -4.3 -3.0 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2921.1 -3.3 -3.2 ferrous iron transport protein compare
Xcc-8004.456.1 -3.3 -2.3 carbonic anhydrase, family 3 compare
Xcc-8004.585.1 -3.1 -1.9 Na(+) H(+) antiporter subunit F compare
Xcc-8004.623.1 -3.1 -2.1 Phosphoserine phosphatase compare
Xcc-8004.1790.1 -3.0 -4.6 Zinc uptake regulation protein ZUR compare
Xcc-8004.2182.1 -3.0 -14.9 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.1241.1 -3.0 -6.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3041.1 -3.0 -3.6 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.2335.1 -2.8 -5.7 Transport ATP-binding protein CydC compare
Xcc-8004.1651.1 -2.8 -7.1 putative Cytochrome bd2, subunit I compare
Xcc-8004.589.1 -2.8 -2.8 hypothetical protein compare
Xcc-8004.2922.1 -2.7 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1727.1 -2.7 -2.7 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.778.1 -2.7 -2.4 FIG01214273: hypothetical protein compare
Xcc-8004.3976.1 -2.6 -6.3 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1652.1 -2.5 -7.4 putative Cytochrome bd2, subunit II compare
Xcc-8004.2334.1 -2.5 -6.4 Transport ATP-binding protein CydD compare
Xcc-8004.4844.1 -2.5 -1.1 FIG01210764: hypothetical protein compare
Xcc-8004.127.1 -2.5 -1.7 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3395.1 -2.4 -3.9 Transcriptional regulator, GntR family compare
Xcc-8004.2923.1 -2.4 -9.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.4620.1 -2.3 -7.2 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3979.1 -2.2 -7.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3054.1 -2.2 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.5203.1 -2.1 -1.8 Twin-arginine translocation protein TatB compare
Xcc-8004.645.1 -2.1 -1.6 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.1132.1 -2.1 -2.2 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.659.1 -2.0 -3.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1359.1 -2.0 -5.8 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.1858.1 -1.9 -1.0 FIG01211170: hypothetical protein compare
Xcc-8004.4945.1 -1.9 -1.0 FIG01210349: hypothetical protein compare
Xcc-8004.3108.1 -1.9 -3.8 Regulatory protein RecX compare
Xcc-8004.1568.1 -1.9 -1.5 Glycine cleavage system H protein compare
Xcc-8004.1372.1 -1.9 -1.8 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1615.1 -1.9 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.2011.1 -1.9 -2.0 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.5202.1 -1.8 -4.5 Twin-arginine translocation protein TatC compare
Xcc-8004.574.1 -1.8 -6.1 Di-/tripeptide transporter compare
Xcc-8004.1933.1 -1.8 -1.9 FIG01209679: hypothetical protein compare
Xcc-8004.2879.1 -1.7 -1.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4526.1 -1.7 -8.1 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.1400.1 -1.7 -2.7 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.171.1 -1.7 -1.1 hypothetical protein compare
Xcc-8004.1244.1 -1.7 -7.4 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.459.1 -1.6 -1.6 4-hydroxybenzoate transporter compare
Xcc-8004.2055.1 -1.6 -1.7 Mobile element protein compare
Xcc-8004.2672.1 -1.6 -2.1 hypothetical protein compare
Xcc-8004.2169.1 -1.6 -2.7 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.3954.1 -1.6 -3.4 HflC protein compare
Xcc-8004.2217.1 -1.6 -3.4 FIG01209779: hypothetical protein compare
Xcc-8004.689.1 -1.6 -1.4 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.5280.1 -1.5 -3.4 hypothetical protein compare
Xcc-8004.957.1 -1.5 -3.4 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1236.1 -1.5 -3.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3726.1 -1.5 -1.5 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.1514.1 -1.5 -2.4 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.2659.1 -1.5 -2.5 FIG01212223: hypothetical protein compare
Xcc-8004.3479.1 -1.5 -1.5 aklaviketone reductase compare
Xcc-8004.1619.1 -1.5 -2.3 PspA/IM30 family protein compare
Xcc-8004.130.1 -1.4 -3.9 hypothetical protein compare
Xcc-8004.2924.1 -1.4 -4.5 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4446.1 -1.4 -3.5 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.2372.1 -1.4 -5.6 Pheromone shutdown protein compare
Xcc-8004.649.1 -1.4 -1.6 hypothetical protein compare
Xcc-8004.1660.1 -1.4 -0.8 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.1045.1 -1.4 -2.7 hypothetical protein compare
Xcc-8004.4596.1 -1.4 -5.8 hypothetical protein compare
Xcc-8004.234.1 -1.3 -7.5 cardiolipin synthase compare
Xcc-8004.4046.1 -1.3 -6.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1434.1 -1.3 -1.5 FIG000859: hypothetical protein YebC compare
Xcc-8004.2434.1 -1.3 -3.3 hypothetical protein compare
Xcc-8004.5239.1 -1.3 -3.9 Hexuronate transporter compare
Xcc-8004.4381.1 -1.3 -2.8 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.2920.1 -1.3 -4.8 Ferrous iron transport protein B compare
Xcc-8004.4221.1 -1.3 -3.8 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.718.1 -1.3 -0.9 hypothetical protein compare
Xcc-8004.3394.1 -1.3 -2.7 hypothetical protein compare
Xcc-8004.3321.1 -1.3 -1.5 FIG01209847: hypothetical protein compare
Xcc-8004.1601.1 -1.3 -4.9 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.2337.1 -1.3 -3.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4477.1 -1.3 -1.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.1919.1 -1.3 -3.4 FIG056164: rhomboid family serine protease compare
Xcc-8004.3049.1 -1.2 -5.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3576.1 -1.2 -5.1 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.3955.1 -1.2 -3.3 HflK protein compare
Xcc-8004.4752.1 -1.2 -1.3 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.2356.1 -1.2 -2.8 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.2713.1 -1.2 -1.0 Nitrate/nitrite transporter compare
Xcc-8004.4102.1 -1.2 -1.8 FIG01211949: hypothetical protein compare
Xcc-8004.2357.1 -1.2 -2.4 Segregation and condensation protein B compare
Xcc-8004.3322.1 -1.2 -1.2 FIG01211446: hypothetical protein compare
Xcc-8004.323.1 -1.2 -1.9 FIG01210738: hypothetical protein compare
Xcc-8004.340.1 -1.2 -1.8 Organic hydroperoxide resistance protein compare
Xcc-8004.3171.1 -1.2 -2.4 FIG01213081: hypothetical protein compare
Xcc-8004.2552.1 -1.2 -2.4 Mobile element protein compare
Xcc-8004.4824.1 -1.2 -5.0 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.319.1 -1.2 -5.9 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.4947.1 -1.2 -2.3 Histone H1 compare
Xcc-8004.3687.1 -1.2 -3.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.1511.1 -1.2 -2.5 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3212.1 -1.2 -2.6 phage-related integrase compare
Xcc-8004.4283.1 -1.1 -0.9 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.1243.1 -1.1 -3.6 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.565.1 -1.1 -3.3 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.3688.1 -1.1 -4.8 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
Xcc-8004.1880.1 -1.1 -4.8 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.461.1 -1.1 -2.6 Transcriptional regulator, MarR family compare
Xcc-8004.2358.1 -1.1 -4.8 Segregation and condensation protein A compare
Xcc-8004.3310.1 -1.1 -3.2 Chromosome partition protein smc compare
Xcc-8004.4478.1 -1.1 -6.8 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Xcc-8004.4810.1 -1.1 -4.9 hypothetical protein compare
Xcc-8004.2229.1 -1.1 -5.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.1677.1 -1.1 -3.2 FIG01209993: hypothetical protein compare
Xcc-8004.4954.1 -1.1 -5.0 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.4322.1 -1.1 -1.4 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.4306.1 -1.1 -1.4 hypothetical protein compare
Xcc-8004.3686.1 -1.1 -4.0 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.494.1 -1.1 -3.1 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.3689.1 -1.1 -5.7 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Xcc-8004.5343.1 -1.0 -3.3 hypothetical protein compare
Xcc-8004.2569.1 -1.0 -1.4 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.3630.1 -1.0 -2.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.1365.1 -1.0 -0.9 FIG01211058: hypothetical protein compare
Xcc-8004.4024.1 -1.0 -4.0 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.1266.1 -1.0 -2.8 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.2259.1 -1.0 -3.0 PhbF compare
Xcc-8004.1512.1 -1.0 -2.0 RNA polymerase sigma-70 factor compare
Xcc-8004.2949.1 -1.0 -2.3 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.4368.1 -1.0 -1.4 FIG01209977: hypothetical protein compare
Xcc-8004.3855.1 -1.0 -4.7 FIG01209965: hypothetical protein compare
Xcc-8004.5185.1 -1.0 -2.1 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.2711.1 -1.0 -0.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.4285.1 -1.0 -5.6 two-component system sensor protein compare
Xcc-8004.321.1 -1.0 -6.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.3775.1 -1.0 -2.4 FIG001154: CcsA-related protein compare
Xcc-8004.4776.1 -1.0 -2.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.1228.1 -1.0 -3.7 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.2652.1 -1.0 -1.2 response regulator compare
Xcc-8004.3426.1 -1.0 -3.1 Chaperone protein DnaJ compare
Xcc-8004.4862.1 -1.0 -2.3 Phage-related baseplate assembly protein compare
Xcc-8004.4275.1 -1.0 -3.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.417.1 -1.0 -3.1 hypothetical protein compare
Xcc-8004.2653.1 -1.0 -2.2 hypothetical protein compare
Xcc-8004.1809.1 -1.0 -1.4 extracellular serine protease compare
Xcc-8004.5140.1 -1.0 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.1959.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.1710.1 -1.0 -2.5 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2691.1 -1.0 -1.9 hypothetical protein compare
Xcc-8004.3690.1 -0.9 -5.9 Transcriptional regulator, XRE family protein compare
Xcc-8004.5214.1 -0.9 -3.4 sal operon transcriptional repressor compare
Xcc-8004.1955.1 -0.9 -3.2 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.4455.1 -0.9 -2.2 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Xcc-8004.764.1 -0.9 -1.7 FIG01213873: hypothetical protein compare
Xcc-8004.4700.1 -0.9 -1.6 FIG01210206: hypothetical protein compare
Xcc-8004.318.1 -0.9 -4.0 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.2839.1 -0.9 -1.1 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.4168.1 -0.9 -2.3 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.570.1 -0.9 -6.1 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Xcc-8004.601.1 -0.9 -2.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3040.1 -0.9 -0.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.1135.1 -0.9 -1.4 FIG01210448: hypothetical protein compare
Xcc-8004.3346.1 -0.9 -1.9 hypothetical protein compare
Xcc-8004.713.1 -0.9 -0.7 FIG01210186: hypothetical protein compare
Xcc-8004.1763.1 -0.9 -1.5 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.2282.1 -0.9 -2.1 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.1196.1 -0.9 -4.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.109.1 -0.9 -5.4 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.280.1 -0.9 -3.4 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.2935.1 -0.9 -6.1 Amino acid transporters compare
Xcc-8004.3783.1 -0.9 -3.6 Two-component system sensor protein compare
Xcc-8004.742.1 -0.9 -1.7 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Xcc-8004.4170.1 -0.9 -1.1 LSU ribosomal protein L25p compare
Xcc-8004.3647.1 -0.9 -1.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.5133.1 -0.9 -1.1 FIG01212313: hypothetical protein compare
Xcc-8004.4271.1 -0.9 -4.2 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) compare
Xcc-8004.5082.1 -0.9 -1.9 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Xcc-8004.5367.1 -0.8 -3.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.290.1 -0.8 -2.4 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.472.1 -0.8 -2.8 Glycerol-3-phosphate regulon repressor, DeoR family compare
Xcc-8004.4200.1 -0.8 -1.5 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.782.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.2228.1 -0.8 -2.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.5226.1 -0.8 -1.1 FIG01212167: hypothetical protein compare
Xcc-8004.2319.1 -0.8 -1.9 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.571.1 -0.8 -4.4 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Xcc-8004.3815.1 -0.8 -1.8 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.4100.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.1205.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.465.1 -0.8 -1.3 Transcriptional regulator PobR, AraC family compare
Xcc-8004.1696.1 -0.8 -0.5 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.409.1 -0.8 -2.8 hypothetical protein compare
Xcc-8004.361.1 -0.8 -2.1 FIG023937: hypothetical protein in ureide degradation cluster compare
Xcc-8004.622.1 -0.8 -1.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.3281.1 -0.8 -3.3 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.1374.1 -0.8 -1.8 Lipoprotein, putative compare
Xcc-8004.2110.1 -0.8 -0.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1409.1 -0.8 -1.4 Cation:proton antiporter compare
Xcc-8004.3370.1 -0.8 -4.5 3'-to-5' exoribonuclease RNase R compare
Xcc-8004.403.1 -0.8 -2.4 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments