Experiment set7IT077 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Dimethyl Sulfoxide 7.5 vol%

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c17050 +1.6 7.2 N-acetyl-gamma-glutamyl-phosphate reductase ArgC compare
PGA1_c24220 +1.6 6.6 ornithine carbamoyltransferase ArgF compare
PGA1_c06420 +1.4 8.2 acetyltransferase domain-containing protein compare
PGA1_c11710 +1.3 7.6 transcriptional regulator, LysR family compare
PGA1_c02050 +1.3 5.8 acetylglutamate kinase ArgB compare
PGA1_c06670 +1.2 5.4 carbamoyl-phosphate synthase small chain compare
PGA1_c24230 +1.2 8.3 acetylornithine aminotransferase ArgD compare
PGA1_c24560 +1.1 7.7 carbamoyl-phosphate synthase large chain compare
PGA1_c11540 +0.8 1.9 gamma-glutamylputrescine synthetase PuuA compare
PGA1_c08600 +0.8 6.6 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c33190 +0.8 4.2 putative anti-sigma-B factor antagonist compare
PGA1_c10730 +0.8 3.2 ribose-5-phosphate isomerase B compare
PGA1_c14190 +0.7 4.8 putative transcriptional regulator, AraC family compare
PGA1_c34880 +0.7 6.0 putative response regulator compare
PGA1_c08590 +0.7 5.7 heme NO binding domain-containing protein compare
PGA1_c27240 +0.7 1.6 hypothetical protein compare
PGA1_c07710 +0.7 1.6 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c14890 +0.7 2.8 Uncharacterized conserved protein compare
PGA1_c34890 +0.7 5.2 putative histidine-containing phosphotransfer protein compare
PGA1_c35770 +0.6 1.7 putative flagella basal body P-ring formation protein FlgA compare
PGA1_c01790 +0.6 3.1 hypothetical protein compare
PGA1_262p00910 +0.6 2.4 putative cation transort protein compare
PGA1_c34770 +0.6 4.2 Uncharacterized protein conserved in bacteria compare
PGA1_c26890 +0.6 2.4 putative endoribonuclease compare
PGA1_c09170 +0.6 2.2 putative biotin synthesis protein BioC compare
PGA1_c26060 +0.6 2.3 Domain of unknown function (DUF1772). compare
PGA1_c17030 +0.5 1.5 peptidoglycan binding domain-containing protein compare
PGA1_c02020 +0.5 1.7 Predicted metal-binding protein compare
PGA1_c24410 +0.5 1.5 hypothetical protein compare
PGA1_c10590 +0.5 0.7 putative ATP-dependent RNA helicase RhlE compare
PGA1_c24850 +0.5 1.4 Uncharacterized conserved small protein containing a coiled-coil domain compare
PGA1_262p00700 +0.5 1.9 stressosome protein rsbS-like protein compare
PGA1_c09580 +0.5 2.5 antibiotic biosynthesis monooxygenase-like protein compare
PGA1_c12390 +0.5 1.7 putative protein SoxS compare
PGA1_c02440 +0.5 4.3 putative ATP-binding/permease fusion ABC transporter compare
PGA1_c17800 +0.5 1.8 putative gene transfer agent head-tail adaptor compare
PGA1_c18560 +0.5 1.4 hypothetical protein compare
PGA1_c18480 +0.5 4.6 hypothetical protein compare
PGA1_c02450 +0.5 4.2 putative outer membrane efflux protein compare
PGA1_c09990 +0.5 2.6 Uncharacterized protein conserved in bacteria compare
PGA1_c15410 +0.5 1.1 hypothetical protein compare
PGA1_c18490 +0.5 4.5 Predicted ATPase compare
PGA1_262p00250 +0.5 1.2 ferritin-like protein compare
PGA1_c18850 +0.5 1.8 Antibiotic biosynthesis monooxygenase. compare
PGA1_65p00380 +0.5 1.6 hypothetical protein compare
PGA1_c22260 +0.5 2.7 hypothetical protein compare
PGA1_c15740 +0.5 1.7 phosphate transport system protein PhoU compare
PGA1_c36020 +0.5 1.1 putative 3'-5'-exonuclease compare
PGA1_c26250 +0.5 1.7 Tellurite resistance protein compare
PGA1_c23710 +0.5 2.2 putative protein HflK compare
PGA1_262p00750 +0.4 1.9 Threonine dehydratase compare
PGA1_262p01410 +0.4 1.8 malate/L-lactate dehydrogenase-like protein compare
PGA1_c03210 +0.4 2.4 branched-chain amino acid transport protein azlD-like protein compare
PGA1_c20140 +0.4 2.7 putative arginine-tRNA-protein transferase compare
PGA1_262p00450 +0.4 1.9 glucose transporter, ATPase component (from data) compare
PGA1_c35060 +0.4 2.5 inner membrane protein compare
PGA1_c30570 +0.4 1.9 Predicted metal-dependent hydrolase compare
PGA1_c12360 +0.4 2.6 Uncharacterized conserved protein compare
PGA1_c13170 +0.4 2.3 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PGA1_c10060 +0.4 1.1 putative transcriptional regulator, MerR family compare
PGA1_c05180 +0.4 2.0 Predicted small integral membrane protein compare
PGA1_c35170 +0.4 1.0 DNA polymerase III subunit epsilon compare
PGA1_c19690 +0.4 2.1 Protein of unknown function (DUF2892). compare
PGA1_c19870 +0.4 1.4 hypothetical protein compare
PGA1_c19200 +0.4 1.1 Predicted Fe-S protein compare
PGA1_c04150 +0.4 2.3 thioesterase domain-containing protein compare
PGA1_c29040 +0.4 2.4 endonuclease III compare
PGA1_c01090 +0.4 2.2 DNA repair protein RecO compare
PGA1_c21000 +0.4 2.2 Predicted integral membrane protein (DUF2282). compare
PGA1_c02460 +0.4 3.3 hypothetical protein compare
PGA1_c23690 +0.4 2.4 protease do compare
PGA1_c12730 +0.4 1.4 TIGR01244 family protein compare
PGA1_c15380 +0.4 0.8 Uncharacterized conserved protein compare
PGA1_262p00660 +0.4 1.3 Predicted periplasmic protein compare
PGA1_c34400 +0.4 2.1 aminotransferase class-III compare
PGA1_c31930 +0.4 3.1 putative transporter, MFS family compare
PGA1_c14700 +0.4 1.8 hypothetical protein compare
PGA1_c16210 +0.4 1.7 iron-sulfur cluster binding domain-containing protein compare
PGA1_c29560 +0.4 2.6 hypothetical protein compare
PGA1_c17760 +0.4 1.8 gene transfer agent (GTA) protein compare
PGA1_c02430 +0.4 2.6 type I secretion membrane fusion protein, HlyD family compare
PGA1_c07850 +0.4 1.8 transcriptional regulator, lacI family compare
PGA1_c12550 +0.4 1.4 hypothetical protein compare
PGA1_c16360 +0.4 1.5 putative transriptional regulator, AsnC family compare
PGA1_c24400 +0.4 1.9 hypothetical protein compare
PGA1_c22400 +0.4 2.0 phage conserved hypothetical protein, phiE125 gp8 family compare
PGA1_65p00350 +0.4 2.6 hemolysin-like protein compare
PGA1_c22500 +0.4 1.2 hypothetical protein compare
PGA1_c28980 +0.4 1.6 glyoxalase/bleomycin resistance protein/dioxygenase domain-containing protein compare
PGA1_c33055 +0.4 1.7 hypothetical protein compare
PGA1_c29000 +0.4 1.6 inner membrane lipoprotein compare
PGA1_c18260 +0.3 1.7 phage major tail tube protein compare
PGA1_c29050 +0.3 1.9 putative carbohydrate kinase, PfkB family compare
PGA1_78p00060 +0.3 1.0 Uncharacterized protein conserved in bacteria compare
PGA1_c05250 +0.3 2.4 2-keto-3-deoxy-galactonokinase compare
PGA1_262p01060 +0.3 1.3 Protein of unknown function (DUF995). compare
PGA1_262p01490 +0.3 1.5 putative sarcosine oxidase, gamma subunit compare
PGA1_c16920 +0.3 1.1 molybdenum cofactor biosynthesis protein C compare
PGA1_c12690 +0.3 1.7 two-component system response regulator compare
PGA1_78p00160 +0.3 1.4 putative sugar-binding periplasmic protein compare
PGA1_c31880 +0.3 3.1 signal transduction histidine kinase compare
PGA1_c08850 +0.3 1.9 secondary thiamine-phosphate synthase enzyme compare
PGA1_c29490 +0.3 1.7 dihydroxy-acid dehydratase LivD compare
PGA1_262p01030 +0.3 1.4 dipeptide transport system permease protein DppB compare
PGA1_c09970 +0.3 2.2 tryptophan 2,3-dioxygenase KynA compare
PGA1_262p00610 +0.3 0.5 metallophosphoesterase compare
PGA1_c14960 +0.3 1.2 putative transcriptional regulator compare
PGA1_c17020 +0.3 1.5 Protein of unknown function (DUF3154). compare
PGA1_c09470 +0.3 1.8 putative ATP-binding protein compare
PGA1_c29620 +0.3 1.2 putative CDP-diacylglycerol--serine O-phosphatidyltransferase compare
PGA1_c32390 +0.3 2.0 Predicted membrane protein compare
PGA1_78p00140 +0.3 0.7 Sugar phosphate isomerases/epimerases compare
PGA1_c10100 +0.3 1.7 putative glutathione transport system permease protein GsiD compare
PGA1_c14070 +0.3 1.8 hypothetical protein compare
PGA1_c01830 +0.3 1.0 Uncharacterized conserved small protein compare
PGA1_c23370 +0.3 1.7 hypothetical protein compare
PGA1_c26480 +0.3 1.2 Protein involved in catabolism of external DNA compare
PGA1_262p01390 +0.3 0.8 hypothetical protein compare
PGA1_c15590 +0.3 2.9 putative transcriptional activator protein compare
PGA1_262p01540 +0.3 1.4 putative enoyl-CoA hydratase / isomerase compare
PGA1_262p00760 +0.3 1.3 transcriptional regulator, AsnC family compare
PGA1_262p00310 +0.3 1.7 glutathione transport system permease protein GsiC compare
PGA1_c26850 +0.3 1.0 Predicted metal-binding protein compare
PGA1_c26260 +0.3 2.0 putative N-acetyltransferase compare
PGA1_c03530 +0.3 1.6 pyridoxamine 5'-phosphate oxidase-like protein compare
PGA1_c28560 +0.3 2.3 hypothetical protein compare
PGA1_78p00250 +0.3 0.9 putative HTH-type transcriptional regulator compare
PGA1_78p00170 +0.3 0.9 putative sn-glycerol-3-phosphate transport system permease protein UgpA compare
PGA1_c12580 +0.3 1.4 Uncharacterized protein conserved in bacteria (DUF2155). compare
PGA1_c10130 +0.3 1.6 glutathione import ATP-binding protein GsiA compare
PGA1_c17260 +0.3 1.0 hypothetical protein compare
PGA1_c05360 +0.3 2.1 putative glycosyl transferase compare
PGA1_c16230 +0.3 1.3 ThiS family. compare
PGA1_c28730 +0.3 2.0 Predicted glutamine amidotransferase compare
PGA1_c32150 +0.3 1.5 pyrazinamidase/nicotinamidase compare
PGA1_65p00170 +0.3 1.6 putative capsular polysaccharide biosynthesis protein compare
PGA1_c07465 +0.3 1.4 putative dksA/traR C4-type zinc finger protein compare
PGA1_c17060 +0.3 1.7 putative glutamate racemase compare
PGA1_c19160 +0.3 1.6 sarcosine oxidase 2 subunit delta compare
PGA1_c17440 +0.3 1.6 putative peroxiredoxin Bcp compare
PGA1_c18820 +0.3 1.2 Uncharacterized secreted protein compare
PGA1_c11070 +0.3 1.0 exodeoxyribonuclease III compare
PGA1_c03770 +0.3 1.1 hypothetical protein compare
PGA1_c10830 +0.3 0.9 colicin V production protein-like protein compare
PGA1_262p00190 +0.3 1.7 putative transporter, MFS family compare
PGA1_c34440 +0.3 1.9 putrescine transport system permease protein PotH compare
PGA1_c00030 +0.3 1.7 DNA replication and repair protein RecF compare
PGA1_c15920 +0.3 1.4 putative branched-chain amino acid transport ATP-binding protein compare
PGA1_262p01710 +0.3 1.6 putative glutathione transport system permease protein compare
PGA1_c07270 +0.3 1.5 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
PGA1_c25720 +0.3 1.5 transcriptional regulator, LysR family compare
PGA1_c11400 +0.3 0.9 ferric uptake regulation protein Fur compare
PGA1_c26950 +0.3 1.4 putative exopolysaccharide synthesis protein ExoD compare
PGA1_c11410 +0.3 1.4 putative integral membrane protein compare
PGA1_c17410 +0.3 1.7 MFS type transporter compare
PGA1_c03220 +0.3 1.9 branched-chain amino acid transport protein azlC-like protein compare
PGA1_c20960 +0.3 1.6 carboxylesterase bioH-like protein compare
PGA1_c29670 +0.3 0.9 small heat shock protein IbpA compare
PGA1_c27120 +0.3 1.5 hypothetical protein compare
PGA1_c13080 +0.3 1.0 transcriptional regulator, GntR family compare
PGA1_c28030 +0.3 1.3 Panthothenate kinase compare
PGA1_c19180 +0.3 0.8 cytochrome c-type biogenesis protein CycH compare
PGA1_c08680 +0.3 1.8 pirin-like protein compare
PGA1_c31910 +0.3 1.6 YGGT family. compare
PGA1_c02960 +0.3 1.4 Predicted acetyltransferase compare
PGA1_c01080 +0.3 0.7 Uncharacterized conserved protein compare
PGA1_c02390 +0.3 1.1 transcriptional regulator, MerR family compare
PGA1_c17680 +0.3 0.7 hypothetical protein compare
PGA1_c36230 +0.3 1.1 Uncharacterized protein conserved in bacteria compare
PGA1_c05300 +0.3 2.0 putative glycosyl transferase compare
PGA1_c18520 +0.3 0.8 Uncharacterized protein conserved in bacteria compare
PGA1_c26810 +0.3 1.2 phenylacetic acid degradation protein PaaI compare
PGA1_c06120 +0.2 1.6 Flp pilus assembly protein, ATPase CpaE compare
PGA1_c11830 +0.2 0.8 hypothetical protein compare
PGA1_c11120 +0.2 1.3 putative deoxyguanosinetriphosphate triphosphohydrolase compare
PGA1_c36270 +0.2 0.8 hypothetical protein compare
PGA1_c06170 +0.2 1.0 hypothetical protein compare
PGA1_c06200 +0.2 1.2 probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
PGA1_c31200 +0.2 1.6 putative acetyltransferase compare
PGA1_c25970 +0.2 1.1 tonB-like protein compare
PGA1_262p01120 +0.2 0.9 hypothetical protein compare
PGA1_c11390 +0.2 0.8 putative ATP-dependent RNA helicase RhlE compare
PGA1_c05690 +0.2 1.5 Truncated hemoglobins compare
PGA1_262p00530 +0.2 1.4 DNA topoisomerase 1B-like protein compare
PGA1_c05370 +0.2 2.2 polyketide synthase compare
PGA1_c12030 +0.2 1.7 3-ketoacyl-CoA thiolase FadA compare
PGA1_c08360 +0.2 0.8 Rhodanese-related sulfurtransferase compare
PGA1_262p02110 +0.2 0.9 putative chemotaxis protein CheW compare
PGA1_c16440 +0.2 1.1 MFS transporter compare
PGA1_c18380 +0.2 0.5 Phage Head-Tail Attachment. compare
PGA1_c34230 +0.2 1.8 putative HTH-type transcriptional regulator, AraC family compare
PGA1_c17700 +0.2 0.6 hypothetical protein compare
PGA1_c03330 +0.2 1.0 tetratricopeptide repeat-containing protein compare
PGA1_78p00240 +0.2 1.1 Uncharacterized protein conserved in bacteria compare
PGA1_c29320 +0.2 0.8 putative endoribonuclease L-PSP compare
PGA1_c29530 +0.2 1.5 Protein of unknown function (DUF1523). compare
PGA1_c00680 +0.2 0.9 transcriptional regulator, arsR family compare
PGA1_c11810 +0.2 0.7 hypothetical protein compare
PGA1_c31720 +0.2 1.3 hypothetical protein compare
PGA1_c21480 +0.2 1.1 dnaJ domain-containing protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Dimethyl Sulfoxide in Phaeobacter inhibens DSM 17395

For stress Dimethyl Sulfoxide across organisms