Experiment set7IT077 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -5.5 -5.0 Tol-Pal system protein TolB compare
IAI47_08705 -4.5 -6.8 carboxy terminal-processing peptidase compare
IAI47_09040 -4.2 -2.8 NAD-dependent epimerase compare
IAI47_08085 -4.0 -6.1 helix-turn-helix domain-containing protein compare
IAI47_05070 -3.7 -1.4 outer membrane protein assembly factor BamB compare
IAI47_09235 -3.4 -3.2 type I DNA topoisomerase compare
IAI47_00760 -3.3 -5.3 envelope stress response regulator transcription factor CpxR compare
IAI47_16995 -3.3 -3.2 protein YrbN compare
IAI47_15485 -3.1 -1.9 molecular chaperone Skp compare
IAI47_13695 -3.0 -1.2 colicin uptake protein TolR compare
IAI47_17000 -3.0 -13.4 lipoprotein NlpI compare
IAI47_09360 -2.7 -1.8 peptide ABC transporter ATP-binding protein SapF compare
IAI47_00465 -2.3 -2.7 ribosome-dependent GTPase TypA compare
IAI47_07350 -2.2 -1.2 hypothetical protein compare
IAI47_18215 -2.1 -1.9 Trk system potassium transporter TrkH compare
IAI47_01365 -2.1 -2.4 inorganic phosphate transporter PitA compare
IAI47_17005 -2.1 -7.9 polyribonucleotide nucleotidyltransferase compare
IAI47_13690 -2.0 -0.7 cell envelope integrity protein TolA compare
IAI47_11415 -2.0 -2.3 hypothetical protein compare
IAI47_00780 -2.0 -4.8 6-phosphofructokinase compare
IAI47_01475 -1.9 -8.6 MurR/RpiR family transcriptional regulator compare
IAI47_10520 -1.9 -3.5 pyridoxamine 5'-phosphate oxidase compare
IAI47_03820 -1.8 -4.2 site-specific tyrosine recombinase XerD compare
IAI47_12275 -1.8 -13.7 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_05155 -1.8 -12.7 polyphosphate kinase 1 compare
IAI47_15970 -1.8 -3.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_11760 -1.8 -1.7 TonB-dependent siderophore receptor compare
IAI47_06135 -1.8 -3.4 phosphohistidine phosphatase SixA compare
IAI47_17020 -1.7 -3.6 30S ribosome-binding factor RbfA compare
IAI47_08700 -1.7 -5.2 RNA chaperone ProQ compare
IAI47_13740 -1.7 -1.6 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_18480 -1.7 -10.2 lipid III flippase WzxE compare
IAI47_05090 -1.7 -3.8 hypothetical protein compare
IAI47_05035 -1.7 -3.1 nucleoside-diphosphate kinase compare
IAI47_04835 -1.7 -7.9 ATP-dependent RNA helicase SrmB compare
IAI47_08450 -1.6 -3.2 Holliday junction branch migration DNA helicase RuvB compare
IAI47_11450 -1.6 -4.7 ankyrin repeat domain-containing protein compare
IAI47_19690 -1.6 -1.2 hypothetical protein compare
IAI47_13760 -1.6 -3.5 succinate dehydrogenase membrane anchor subunit compare
IAI47_04300 -1.6 -6.3 recombinase RecA compare
IAI47_02090 -1.6 -4.5 elongation factor Tu compare
IAI47_18145 -1.6 -2.5 elongation factor Tu compare
IAI47_04400 -1.5 -6.2 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_17560 -1.5 -1.7 ROK family transcriptional regulator compare
IAI47_16085 -1.5 -1.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_00460 -1.5 -2.3 glutamate--ammonia ligase compare
IAI47_06380 -1.5 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_04335 -1.4 -2.8 tRNA-Arg compare
IAI47_12280 -1.4 -9.3 glucan biosynthesis protein G compare
IAI47_21595 -1.4 -7.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_08165 -1.4 -6.4 flagella biosynthesis regulatory protein FliZ compare
IAI47_08355 -1.4 -3.4 flagellar protein FlhE compare
IAI47_18400 -1.3 -2.1 tyrosine recombinase XerC compare
IAI47_06655 -1.3 -3.8 1-phosphofructokinase compare
IAI47_13700 -1.3 -4.2 Tol-Pal system protein TolQ compare
IAI47_06245 -1.3 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_03375 -1.3 -6.9 peptide chain release factor 3 compare
IAI47_07485 -1.3 -3.4 DUF4756 family protein compare
IAI47_07025 -1.3 -4.8 glycosyltransferase family 4 protein compare
IAI47_12925 -1.2 -2.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_18420 -1.2 -8.1 class I adenylate cyclase compare
IAI47_11310 -1.2 -2.5 redox-regulated ATPase YchF compare
IAI47_04800 -1.2 -1.1 RnfH family protein compare
IAI47_02585 -1.2 -2.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_00870 -1.2 -1.2 50S ribosomal protein L31 compare
IAI47_12885 -1.2 -6.9 pyruvate formate lyase 1-activating protein compare
IAI47_21355 -1.1 -3.6 DUF3606 domain-containing protein compare
IAI47_20595 -1.1 -3.0 GhoT/OrtT family toxin compare
IAI47_07475 -1.1 -0.9 hypothetical protein compare
IAI47_04425 -1.1 -6.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_18830 -1.1 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_15635 -1.1 -2.8 RNA polymerase-binding protein DksA compare
IAI47_17235 -1.1 -7.2 stringent starvation protein A compare
IAI47_06120 -1.1 -2.6 YfcZ/YiiS family protein compare
IAI47_10565 -1.1 -2.1 DUF4113 domain-containing protein compare
IAI47_17965 -1.1 -7.6 glucose-6-phosphate isomerase compare
IAI47_01000 -1.1 -8.6 HTH-type transcriptional regulator HdfR compare
IAI47_00835 -1.1 -1.8 cell division protein ZapB compare
IAI47_10840 -1.1 -3.0 pyruvate kinase PykF compare
IAI47_12790 -1.1 -0.7 chromosome partition protein MukE compare
IAI47_06405 -1.1 -2.2 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_12470 -1.0 -7.6 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_14730 -1.0 -1.0 exodeoxyribonuclease VII small subunit compare
IAI47_09055 -1.0 -6.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_00500 -1.0 -7.3 ATP-dependent DNA helicase RecG compare
IAI47_17155 -1.0 -6.3 calcium/sodium antiporter compare
IAI47_21600 -1.0 -2.9 EamA family transporter compare
IAI47_04870 -1.0 -4.0 elongation factor 4 compare
IAI47_05420 -1.0 -0.9 PTS glucose transporter subunit IIA compare
IAI47_17900 -1.0 -1.0 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_10845 -1.0 -2.7 major outer membrane lipoprotein compare
IAI47_10555 -1.0 -2.1 hypothetical protein compare
IAI47_03590 -1.0 -5.4 YggT family protein compare
IAI47_12375 -1.0 -1.1 acyl carrier protein compare
IAI47_16095 -1.0 -2.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_02400 -1.0 -1.7 YhdT family protein compare
IAI47_00655 -1.0 -2.7 glycosyltransferase family 4 protein compare
IAI47_20480 -1.0 -4.3 YfiR family protein compare
IAI47_05195 -1.0 -1.6 DnaA inactivator Hda compare
IAI47_13925 -0.9 -1.4 tRNA-Met compare
IAI47_07180 -0.9 -4.4 DUF496 family protein compare
IAI47_08305 -0.9 -4.4 chemotaxis protein CheW compare
IAI47_01005 -0.9 -7.0 DUF413 domain-containing protein compare
IAI47_10835 -0.9 -0.8 tRNA-Val compare
IAI47_05660 -0.9 -5.0 serine protease compare
IAI47_19935 -0.9 -3.3 hypothetical protein compare
IAI47_02750 -0.9 -7.5 class 1 fructose-bisphosphatase compare
IAI47_03135 -0.9 -4.5 outer membrane channel protein TolC compare
IAI47_10340 -0.9 -3.5 mannose-6-phosphate isomerase compare
IAI47_10530 -0.9 -3.5 hypothetical protein compare
IAI47_08680 -0.9 -5.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_03240 -0.9 -2.5 TonB system transport protein ExbD compare
IAI47_10690 -0.9 -3.7 hypothetical protein compare
IAI47_04865 -0.8 -1.6 SoxR-reducing system protein RseC compare
IAI47_21155 -0.8 -2.1 IS6 family transposase compare
IAI47_17035 -0.8 -1.7 ribosome maturation factor RimP compare
IAI47_02380 -0.8 -1.3 DNA-binding transcriptional regulator Fis compare
IAI47_21655 -0.8 -0.7 LacI family DNA-binding transcriptional regulator compare
IAI47_04110 -0.8 -7.4 two-component sensor histidine kinase BarA compare
IAI47_07355 -0.8 -3.9 winged helix-turn-helix domain-containing protein compare
IAI47_20705 -0.8 -0.9 sulfur carrier protein ThiS compare
IAI47_13625 -0.8 -4.7 CDF family zinc transporter ZitB compare
IAI47_18470 -0.8 -6.4 ECA oligosaccharide polymerase compare
IAI47_08605 -0.8 -2.4 hypothetical protein compare
IAI47_12865 -0.8 -4.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_13720 -0.8 -3.0 cytochrome d ubiquinol oxidase subunit II compare
IAI47_08325 -0.8 -3.9 protein-glutamate O-methyltransferase CheR compare
IAI47_01530 -0.8 -4.3 DUF1145 family protein compare
IAI47_00375 -0.8 -7.0 ribose operon transcriptional repressor RbsR compare
IAI47_13725 -0.8 -3.0 cytochrome ubiquinol oxidase subunit I compare
IAI47_09380 -0.8 -3.5 peptide ABC transporter substrate-binding protein SapA compare
IAI47_02990 -0.8 -4.5 hypothetical protein compare
IAI47_10775 -0.8 -3.1 ribonuclease T compare
IAI47_08845 -0.8 -1.3 cell division topological specificity factor MinE compare
IAI47_07490 -0.8 -2.0 DNA-binding protein compare
IAI47_12880 -0.8 -6.1 formate C-acetyltransferase compare
IAI47_04775 -0.8 -1.2 SIR2 family protein compare
IAI47_00735 -0.8 -0.9 protein-export chaperone SecB compare
IAI47_13890 -0.7 -4.3 ROK family transcriptional regulator compare
IAI47_18055 -0.7 -3.0 DNA-binding protein HU-alpha compare
IAI47_02605 -0.7 -4.5 protease modulator HflC compare
IAI47_02850 -0.7 -4.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_18705 -0.7 -4.7 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_02600 -0.7 -4.9 FtsH protease activity modulator HflK compare
IAI47_03260 -0.7 -4.9 molecular chaperone compare
IAI47_00505 -0.7 -2.9 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_15540 -0.7 -4.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_02255 -0.7 -4.8 DUF1992 domain-containing protein compare
IAI47_18530 -0.7 -1.3 thioredoxin TrxA compare
IAI47_19035 -0.7 -1.5 transcriptional regulator compare
IAI47_20600 -0.7 -1.1 hypothetical protein compare
IAI47_07625 -0.7 -2.7 GNAT family N-acetyltransferase compare
IAI47_18240 -0.7 -1.7 NAD(P)H-flavin reductase compare
IAI47_07450 -0.7 -1.4 winged helix-turn-helix domain-containing protein compare
IAI47_19940 -0.7 -1.8 hypothetical protein compare
IAI47_01830 -0.7 -4.8 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_18415 -0.7 -2.8 lipoprotein compare
IAI47_21235 -0.7 -0.9 hypothetical protein compare
IAI47_10575 -0.7 -2.6 hypothetical protein compare
IAI47_18495 -0.7 -2.4 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI47_00935 -0.7 -3.5 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_21300 -0.7 -2.8 AzlD domain-containing protein compare
IAI47_06040 -0.7 -1.8 DNA polymerase V compare
IAI47_16080 -0.7 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_05120 -0.7 -2.1 DUF2158 domain-containing protein compare
IAI47_12060 -0.7 -2.5 beta-ketoacyl-ACP synthase II compare
IAI47_00755 -0.7 -5.0 envelope stress sensor histidine kinase CpxA compare
IAI47_10945 -0.7 -2.3 vitamin B12 ABC transporter permease BtuC compare
IAI47_14775 -0.7 -1.8 transcriptional regulator NrdR compare
IAI47_07780 -0.7 -2.7 phosphonate C-P lyase system protein PhnL compare
IAI47_17165 -0.6 -4.3 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI47_10430 -0.6 -1.5 hypothetical protein compare
IAI47_13750 -0.6 -1.5 succinate dehydrogenase iron-sulfur subunit compare
IAI47_08440 -0.6 -1.3 crossover junction endodeoxyribonuclease RuvC compare
IAI47_09305 -0.6 -1.2 cyclic di-GMP phosphodiesterase compare
IAI47_16415 -0.6 -4.6 nucleoside hydrolase compare
IAI47_19825 -0.6 -3.0 EAL domain-containing protein compare
IAI47_00370 -0.6 -5.2 ribokinase compare
IAI47_09145 -0.6 -2.6 UPF0259 family protein compare
IAI47_08615 -0.6 -2.8 phage baseplate assembly protein V compare
IAI47_03680 -0.6 -4.1 transketolase compare
IAI47_02040 -0.6 -3.5 peptidylprolyl isomerase compare
IAI47_01875 -0.6 -1.6 hypothetical protein compare
IAI47_13050 -0.6 -2.3 YbjN domain-containing protein compare
IAI47_17120 -0.6 -1.3 BolA family iron metabolism protein IbaG compare
IAI47_18475 -0.6 -4.1 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
IAI47_16560 -0.6 -3.5 hypothetical protein compare
IAI47_09210 -0.6 -2.6 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_07515 -0.6 -2.0 hypothetical protein compare
IAI47_13710 -0.6 -1.6 cyd operon protein YbgE compare
IAI47_18490 -0.6 -2.2 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_14805 -0.6 -3.1 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_12655 -0.6 -4.0 Lon protease family protein compare
IAI47_03250 -0.6 -4.6 spore coat U domain-containing protein compare
IAI47_14955 -0.6 -1.3 phosphate starvation-inducible protein compare
IAI47_06300 -0.6 -2.8 histidine ABC transporter ATP-binding protein HisP compare
IAI47_02260 -0.6 -3.3 Zn(2+)-responsive transcriptional regulator compare
IAI47_03550 -0.6 -4.4 membrane-bound lytic murein transglycosylase MltC compare
IAI47_06980 -0.6 -1.4 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_13755 -0.6 -2.8 succinate dehydrogenase flavoprotein subunit compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=12hrs; Outgrowth=LBkan50 across organisms