Experiment set7IT076 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.171.1 -5.2 -1.8 hypothetical protein compare
Xcc-8004.726.1 -4.5 -1.5 Putative preQ0 transporter compare
Xcc-8004.1380.1 -4.0 -2.7 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.3976.1 -3.7 -5.3 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2182.1 -3.7 -13.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.3041.1 -3.5 -4.4 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.2921.1 -3.4 -4.0 ferrous iron transport protein compare
Xcc-8004.5168.1 -3.0 -1.4 hypothetical protein compare
Xcc-8004.3898.1 -3.0 -1.4 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.2922.1 -3.0 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1651.1 -2.9 -7.5 putative Cytochrome bd2, subunit I compare
Xcc-8004.1652.1 -2.7 -6.4 putative Cytochrome bd2, subunit II compare
Xcc-8004.4620.1 -2.6 -7.8 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3346.1 -2.6 -3.1 hypothetical protein compare
Xcc-8004.2497.1 -2.6 -1.2 Mobile element protein compare
Xcc-8004.1359.1 -2.5 -6.8 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.1372.1 -2.5 -1.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1615.1 -2.5 -2.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1436.1 -2.5 -2.4 Holliday junction DNA helicase RuvA compare
Xcc-8004.1205.1 -2.4 -3.7 hypothetical protein compare
Xcc-8004.4251.1 -2.4 -3.3 hypothetical protein compare
Xcc-8004.4039.1 -2.4 -3.2 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2652.1 -2.4 -3.0 response regulator compare
Xcc-8004.2334.1 -2.3 -5.3 Transport ATP-binding protein CydD compare
Xcc-8004.4231.1 -2.3 -1.5 two-component system regulatory protein compare
Xcc-8004.2879.1 -2.3 -1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.127.1 -2.3 -2.2 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.2923.1 -2.2 -8.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.2335.1 -2.2 -4.6 Transport ATP-binding protein CydC compare
Xcc-8004.337.1 -2.2 -2.9 ATPase, AFG1 family compare
Xcc-8004.2343.1 -2.1 -2.3 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.623.1 -2.1 -2.3 Phosphoserine phosphatase compare
Xcc-8004.130.1 -2.0 -6.5 hypothetical protein compare
Xcc-8004.2924.1 -2.0 -6.4 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3721.1 -1.9 -2.2 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.319.1 -1.9 -9.7 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.5368.1 -1.9 -2.5 FIG01210868: hypothetical protein compare
Xcc-8004.3979.1 -1.9 -6.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2920.1 -1.9 -6.2 Ferrous iron transport protein B compare
Xcc-8004.3040.1 -1.8 -2.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.1241.1 -1.8 -4.4 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.574.1 -1.8 -7.1 Di-/tripeptide transporter compare
Xcc-8004.1914.1 -1.8 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.4013.1 -1.8 -2.8 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.3855.1 -1.7 -6.0 FIG01209965: hypothetical protein compare
Xcc-8004.3576.1 -1.7 -6.5 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.471.1 -1.7 -4.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.2632.1 -1.7 -2.6 Minor coat protein compare
Xcc-8004.4810.1 -1.7 -6.8 hypothetical protein compare
Xcc-8004.4596.1 -1.7 -6.5 hypothetical protein compare
Xcc-8004.4024.1 -1.6 -5.4 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.3794.1 -1.6 -1.8 Mobile element protein compare
Xcc-8004.3321.1 -1.6 -1.7 FIG01209847: hypothetical protein compare
Xcc-8004.3281.1 -1.6 -6.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.494.1 -1.6 -4.3 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.1162.1 -1.6 -2.7 FIG01210644: hypothetical protein compare
Xcc-8004.401.1 -1.5 -2.4 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.3726.1 -1.5 -1.4 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.4046.1 -1.5 -7.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.957.1 -1.5 -3.9 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.4204.1 -1.5 -3.1 FIG01210014: hypothetical protein compare
Xcc-8004.1082.1 -1.5 -2.4 FIG01211203: hypothetical protein compare
Xcc-8004.1521.1 -1.5 -1.6 FIG01209895: hypothetical protein compare
Xcc-8004.1236.1 -1.4 -3.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1243.1 -1.4 -5.4 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.2337.1 -1.4 -4.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.3230.1 -1.4 -2.0 Phage DNA invertase compare
Xcc-8004.4329.1 -1.4 -1.3 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.5114.1 -1.4 -4.3 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3310.1 -1.4 -3.7 Chromosome partition protein smc compare
Xcc-8004.4285.1 -1.4 -6.0 two-component system sensor protein compare
Xcc-8004.601.1 -1.4 -4.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.5202.1 -1.3 -4.0 Twin-arginine translocation protein TatC compare
Xcc-8004.3742.1 -1.3 -1.7 Type III effector compare
Xcc-8004.4446.1 -1.3 -4.3 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.3049.1 -1.3 -4.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3402.1 -1.3 -2.8 FIG01210246: hypothetical protein compare
Xcc-8004.4102.1 -1.3 -1.3 FIG01211949: hypothetical protein compare
Xcc-8004.3473.1 -1.2 -1.6 FIG01213437: hypothetical protein compare
Xcc-8004.461.1 -1.2 -1.8 Transcriptional regulator, MarR family compare
Xcc-8004.3783.1 -1.2 -3.9 Two-component system sensor protein compare
Xcc-8004.2228.1 -1.2 -3.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.4477.1 -1.2 -1.2 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.1955.1 -1.2 -3.9 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.94.1 -1.2 -1.1 Transcriptional regulator, LuxR family compare
Xcc-8004.5224.1 -1.2 -1.4 bleomycin resistance protein compare
Xcc-8004.5214.1 -1.2 -3.4 sal operon transcriptional repressor compare
Xcc-8004.4457.1 -1.2 -2.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.5343.1 -1.2 -4.1 hypothetical protein compare
Xcc-8004.1334.1 -1.2 -1.3 hypothetical protein compare
Xcc-8004.1437.1 -1.1 -3.7 Kup system potassium uptake protein compare
Xcc-8004.4241.1 -1.1 -2.0 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.318.1 -1.1 -4.2 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.2910.1 -1.1 -3.2 Regulatory protein, RpfE type compare
Xcc-8004.1228.1 -1.1 -4.0 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.4224.1 -1.1 -3.1 Hydrogen peroxide-inducible genes activator compare
Xcc-8004.1587.1 -1.1 -2.5 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Xcc-8004.1007.1 -1.1 -1.0 acetylxylan esterase compare
Xcc-8004.3676.1 -1.1 -1.8 Translation elongation factor LepA compare
Xcc-8004.1720.1 -1.1 -2.1 UPF0301 protein YqgE compare
Xcc-8004.2011.1 -1.1 -1.4 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4698.1 -1.1 -3.2 Methyl-accepting chemotaxis protein compare
Xcc-8004.741.1 -1.1 -2.0 hypothetical protein compare
Xcc-8004.4322.1 -1.1 -1.4 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.1771.1 -1.1 -2.5 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.1880.1 -1.1 -4.8 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.1710.1 -1.1 -4.8 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.4526.1 -1.1 -5.4 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.5203.1 -1.1 -0.9 Twin-arginine translocation protein TatB compare
Xcc-8004.3647.1 -1.1 -2.9 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.5019.1 -1.0 -0.9 FIG01210147: hypothetical protein compare
Xcc-8004.4333.1 -1.0 -3.0 quinone reductase compare
Xcc-8004.2199.1 -1.0 -1.1 Hemerythrin-like protein PA1673 compare
Xcc-8004.5280.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.3395.1 -1.0 -1.6 Transcriptional regulator, GntR family compare
Xcc-8004.884.1 -1.0 -5.5 Rod shape-determining protein MreD compare
Xcc-8004.4929.1 -1.0 -1.9 hypothetical protein compare
Xcc-8004.1328.1 -1.0 -1.9 FIG01210090: hypothetical protein compare
Xcc-8004.5268.1 -1.0 -1.5 Mobile element protein compare
Xcc-8004.5252.1 -1.0 -3.3 FIG01210658: hypothetical protein compare
Xcc-8004.321.1 -1.0 -6.2 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.589.1 -1.0 -1.7 hypothetical protein compare
Xcc-8004.4553.1 -1.0 -3.2 FIG01211682: hypothetical protein compare
Xcc-8004.2229.1 -1.0 -5.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.1133.1 -1.0 -1.3 Rubredoxin compare
Xcc-8004.3881.1 -1.0 -2.1 hypothetical protein compare
Xcc-8004.787.1 -1.0 -0.8 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.861.1 -1.0 -3.3 FIG01211470: hypothetical protein compare
Xcc-8004.5366.1 -1.0 -6.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.4288.1 -1.0 -2.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.1763.1 -1.0 -1.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1601.1 -1.0 -3.7 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.3612.1 -0.9 -1.0 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.5185.1 -0.9 -1.6 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.4976.1 -0.9 -6.3 hypothetical protein compare
Xcc-8004.1117.1 -0.9 -1.6 hypothetical protein compare
Xcc-8004.3595.1 -0.9 -0.9 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.2259.1 -0.9 -3.3 PhbF compare
Xcc-8004.1138.1 -0.9 -2.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.1839.1 -0.9 -1.3 FIG01210863: hypothetical protein compare
Xcc-8004.797.1 -0.9 -1.0 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.1790.1 -0.9 -1.6 Zinc uptake regulation protein ZUR compare
Xcc-8004.4478.1 -0.9 -5.0 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Xcc-8004.565.1 -0.9 -2.4 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.5263.1 -0.9 -2.5 hypothetical protein compare
Xcc-8004.3320.1 -0.9 -1.1 FIG01209869: hypothetical protein compare
Xcc-8004.1855.1 -0.9 -2.7 FIG01211692: hypothetical protein compare
Xcc-8004.4250.1 -0.9 -2.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.3981.1 -0.9 -2.5 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.3211.1 -0.9 -2.2 protein of unknown function DUF88 compare
Xcc-8004.1871.1 -0.9 -2.6 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.1658.1 -0.9 -2.8 hypothetical protein compare
Xcc-8004.4954.1 -0.9 -4.5 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.2012.1 -0.9 -3.6 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.336.1 -0.9 -3.7 Alpha/beta hydrolase compare
Xcc-8004.1619.1 -0.9 -2.3 PspA/IM30 family protein compare
Xcc-8004.5363.1 -0.9 -1.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.3903.1 -0.9 -1.9 Mlr6856 protein compare
Xcc-8004.1247.1 -0.8 -2.1 Cysteine synthase (EC 2.5.1.47) compare
Xcc-8004.5367.1 -0.8 -2.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.4191.1 -0.8 -3.6 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.3689.1 -0.8 -4.1 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Xcc-8004.4635.1 -0.8 -1.4 hypothetical protein compare
Xcc-8004.4776.1 -0.8 -1.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.3848.1 -0.8 -1.2 FIG01212003: hypothetical protein compare
Xcc-8004.998.1 -0.8 -1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4168.1 -0.8 -2.1 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.629.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.2782.1 -0.8 -2.4 Flagellar basal-body rod protein FlgF compare
Xcc-8004.892.1 -0.8 -1.8 Coupling protein VirD4, ATPase required for T-DNA transfer compare
Xcc-8004.995.1 -0.8 -1.6 rhamnogalacturonase B compare
Xcc-8004.4517.1 -0.8 -4.7 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.2389.1 -0.8 -0.7 protein of unknown function DUF1244 compare
Xcc-8004.4371.1 -0.8 -2.0 rRNA small subunit methyltransferase I compare
Xcc-8004.1511.1 -0.8 -1.4 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.4112.1 -0.8 -1.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.399.1 -0.8 -1.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.3686.1 -0.8 -2.9 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.4890.1 -0.8 -5.4 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.659.1 -0.8 -1.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3690.1 -0.8 -4.1 Transcriptional regulator, XRE family protein compare
Xcc-8004.4671.1 -0.8 -2.0 FIG01212254: hypothetical protein compare
Xcc-8004.417.1 -0.8 -2.0 hypothetical protein compare
Xcc-8004.1660.1 -0.8 -0.6 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.5317.1 -0.7 -0.7 FIG01210332: hypothetical protein compare
Xcc-8004.4301.1 -0.7 -2.5 Nucleoside permease NupC compare
Xcc-8004.2672.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.3385.1 -0.7 -1.9 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.280.1 -0.7 -2.7 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.376.1 -0.7 -2.5 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) compare
Xcc-8004.2755.1 -0.7 -4.2 ATP-dependent Clp protease adaptor protein ClpS compare
Xcc-8004.3715.1 -0.7 -0.5 FIG01212258: hypothetical protein compare
Xcc-8004.598.1 -0.7 -3.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2561.1 -0.7 -3.4 FIG01213638: hypothetical protein compare
Xcc-8004.1196.1 -0.7 -3.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.3653.1 -0.7 -0.9 FIG01212122: hypothetical protein compare
Xcc-8004.571.1 -0.7 -4.4 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Xcc-8004.740.1 -0.7 -1.4 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.323.1 -0.7 -1.8 FIG01210738: hypothetical protein compare
Xcc-8004.4222.1 -0.7 -3.0 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments