Experiment set7IT075 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM Gly-Glu

200 most important genes:

  gene name fitness t score description  
MMP_RS04440 -5.4 -13.6 nitrogenase iron protein compare
MMP_RS03435 -5.0 -2.4 ketol-acid reductoisomerase compare
MMP_RS04455 -5.0 -26.7 nitrogenase subunit alpha compare
MMP_RS04450 -4.9 -18.7 P-II family nitrogen regulator compare
MMP_RS05500 -4.9 -12.8 2-isopropylmalate synthase compare
MMP_RS04445 -4.8 -8.9 P-II family nitrogen regulator compare
MMP_RS04710 -4.8 -3.1 hypothetical protein compare
MMP_RS00555 -4.8 -11.1 MFS transporter compare
MMP_RS04465 -4.8 -19.1 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS01500 -4.7 -4.1 CBS domain-containing protein compare
MMP_RS05550 -4.7 -1.1 cation:proton antiporter compare
MMP_RS02010 -4.6 -14.3 PHP domain-containing protein compare
MMP_RS04460 -4.5 -24.1 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS02145 -4.5 -12.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS04470 -4.5 -21.6 nitrogenase compare
MMP_RS08165 -4.5 -4.2 phosphoglycerate dehydrogenase compare
MMP_RS03315 -4.5 -2.5 ferrous iron transport protein A compare
MMP_RS06730 -4.5 -3.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS08715 -4.3 -3.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01175 -4.3 -7.6 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS02675 -4.2 -5.1 hypothetical protein compare
MMP_RS01385 -4.1 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07845 -4.1 -3.5 LL-diaminopimelate aminotransferase compare
MMP_RS02680 -4.0 -8.7 ABC transporter permease compare
MMP_RS02685 -4.0 -18.2 molybdate ABC transporter substrate-binding protein compare
MMP_RS08440 -3.9 -4.7 cell division protein SepF compare
MMP_RS06625 -3.9 -2.9 DNA primase compare
MMP_RS07635 -3.9 -10.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06120 -3.9 -3.3 UPF0147 family protein compare
MMP_RS00750 -3.8 -4.1 fumarate hydratase compare
MMP_RS02670 -3.8 -15.5 ATP-binding cassette domain-containing protein compare
MMP_RS07525 -3.8 -9.5 4Fe-4S binding protein compare
MMP_RS08720 -3.7 -2.8 4Fe-4S binding protein compare
MMP_RS01020 -3.7 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03035 -3.7 -5.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01380 -3.7 -8.3 PHP domain-containing protein compare
MMP_RS06350 -3.6 -11.3 HesA/MoeB/ThiF family protein compare
MMP_RS01755 -3.6 -2.3 DUF2097 domain-containing protein compare
MMP_RS01455 -3.6 -8.6 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS05930 -3.6 -4.0 3-isopropylmalate dehydratase large subunit compare
MMP_RS07185 -3.6 -18.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS02355 -3.6 -4.5 30S ribosomal protein S27ae compare
MMP_RS01830 -3.5 -2.3 tRNA-Val compare
MMP_RS02730 -3.5 -13.2 ModD protein compare
MMP_RS00985 -3.5 -9.2 CDC48 family AAA ATPase compare
MMP_RS06475 -3.5 -6.1 FAD-dependent oxidoreductase compare
MMP_RS06270 -3.4 -8.6 TIGR00300 family protein compare
MMP_RS00040 -3.3 -5.9 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS07730 -3.3 -3.1 pyruvate synthase subunit beta compare
MMP_RS07365 -3.2 -14.3 2-phosphoglycerate kinase compare
MMP_RS01265 -3.2 -2.6 hypothetical protein compare
MMP_RS07735 -3.2 -1.5 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07435 -3.2 -3.1 GMP synthase subunit A compare
MMP_RS05250 -3.2 -2.2 NFYB/HAP3 family transcription factor subunit compare
MMP_RS06725 -3.2 -14.4 hypothetical protein compare
MMP_RS01610 -3.2 -6.4 hypothetical protein compare
MMP_RS08860 -3.2 -9.5 MinD/ParA family protein compare
MMP_RS00455 -3.1 -10.1 orotate phosphoribosyltransferase-like protein compare
MMP_RS03700 -3.1 -11.8 sodium:proton antiporter compare
MMP_RS07445 -3.1 -7.1 helix-turn-helix domain-containing protein compare
MMP_RS06285 -3.1 -3.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02245 -3.1 -5.3 hypothetical protein compare
MMP_RS04890 -3.1 -1.4 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08650 -3.1 -4.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03640 -3.1 -5.5 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS04780 -3.1 -5.1 ribonuclease P compare
MMP_RS01005 -3.0 -2.4 riboflavin synthase compare
MMP_RS03600 -3.0 -3.3 triose-phosphate isomerase compare
MMP_RS04790 -3.0 -16.9 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01925 -3.0 -11.8 DUF1616 domain-containing protein compare
MMP_RS01960 -3.0 -1.3 hypothetical protein compare
MMP_RS05515 -3.0 -9.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS08210 -3.0 -3.5 phosphatidylglycerophosphatase A compare
MMP_RS03110 -3.0 -6.8 glycosyltransferase family 2 protein compare
MMP_RS05265 -3.0 -3.7 2-isopropylmalate synthase compare
MMP_RS06400 -3.0 -2.7 4Fe-4S binding protein compare
MMP_RS07390 -3.0 -2.8 cell division protein FtsZ compare
MMP_RS08790 -2.9 -3.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS08635 -2.9 -3.2 UbiA family prenyltransferase compare
MMP_RS01980 -2.9 -17.9 trimeric intracellular cation channel family protein compare
MMP_RS04585 -2.9 -14.1 AIR synthase related protein compare
MMP_RS01225 -2.9 -6.7 DUF5379 domain-containing protein compare
MMP_RS06020 -2.8 -6.4 archaeoflavoprotein AfpA compare
MMP_RS06670 -2.8 -8.7 glucose-6-phosphate isomerase compare
MMP_RS01800 -2.8 -4.2 TIGR00303 family protein compare
MMP_RS06375 -2.8 -5.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS04900 -2.8 -18.9 hypothetical protein compare
MMP_RS01545 -2.8 -1.6 CBS domain-containing protein compare
MMP_RS07380 -2.8 -3.1 transcription elongation factor Spt5 compare
MMP_RS00915 -2.7 -10.3 DUF116 domain-containing protein compare
MMP_RS01795 -2.7 -2.8 methanogenesis marker 6 protein compare
MMP_RS08300 -2.7 -1.7 metal-sulfur cluster assembly factor compare
MMP_RS09020 -2.7 -2.5 hypothetical protein compare
MMP_RS02800 -2.6 -8.5 nucleotidyltransferase domain-containing protein compare
MMP_RS03015 -2.6 -9.2 GTP 3' 8-cyclase MoaA compare
MMP_RS06295 -2.6 -8.4 methanogenesis marker 14 protein compare
MMP_RS01900 -2.6 -15.3 hypothetical protein compare
MMP_RS02345 -2.6 -4.2 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04215 -2.6 -6.2 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS03025 -2.6 -6.6 molybdenum cofactor guanylyltransferase compare
MMP_RS05845 -2.6 -2.4 tRNA-intron lyase compare
MMP_RS06895 -2.6 -2.2 selenocysteine-specific translation elongation factor compare
MMP_RS07075 -2.6 -5.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS05920 -2.5 -0.6 50S ribosomal protein L37e compare
MMP_RS08645 -2.5 -7.9 UPF0179 family protein compare
MMP_RS01725 -2.5 -5.9 class I SAM-dependent methyltransferase family protein compare
MMP_RS04090 -2.5 -4.2 hypothetical protein compare
MMP_RS04605 -2.5 -5.8 cobalt ECF transporter T component CbiQ compare
MMP_RS08500 -2.5 -8.6 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS04870 -2.4 -6.4 TIGR02253 family HAD-type hydrolase compare
MMP_RS08195 -2.4 -12.1 hypothetical protein compare
MMP_RS03445 -2.4 -1.5 methanogenesis marker 17 protein compare
MMP_RS07200 -2.4 -7.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08745 -2.3 -8.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07695 -2.3 -7.1 DUF3236 domain-containing protein compare
MMP_RS00305 -2.3 -2.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS07355 -2.3 -1.4 transcription factor S compare
MMP_RS01220 -2.3 -10.1 hypothetical protein compare
MMP_RS01975 -2.2 -13.9 hypothetical protein compare
MMP_RS02900 -2.2 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08435 -2.2 -3.4 Era-like GTP-binding protein compare
MMP_RS05430 -2.2 -5.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS02195 -2.2 -5.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06395 -2.2 -5.4 ThiF family adenylyltransferase compare
MMP_RS00735 -2.2 -5.3 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS02240 -2.2 -3.5 methanogenesis marker 7 protein compare
MMP_RS05925 -2.2 -5.9 small nuclear ribonucleoprotein compare
MMP_RS03475 -2.2 -1.1 hypothetical protein compare
MMP_RS08350 -2.2 -1.3 hypothetical protein compare
MMP_RS07555 -2.2 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS07575 -2.1 -4.7 RNA ligase partner protein compare
MMP_RS06855 -2.1 -11.7 hypothetical protein compare
MMP_RS04875 -2.1 -5.8 energy-converting hydrogenase B subunit P compare
MMP_RS01665 -2.1 -4.0 DUF2111 domain-containing protein compare
MMP_RS00685 -2.1 -6.2 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07700 -2.1 -9.2 DUF1188 domain-containing protein compare
MMP_RS08330 -2.1 -7.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS00730 -2.1 -5.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS07535 -2.1 -11.2 4Fe-4S binding protein compare
MMP_RS00310 -2.1 -5.7 CBS domain-containing protein compare
MMP_RS07605 -2.0 -3.5 diadenylate cyclase compare
MMP_RS01875 -2.0 -10.1 N-acetyltransferase compare
MMP_RS01885 -2.0 -8.0 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07955 -2.0 -4.5 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02340 -2.0 -1.7 DNA-directed RNA polymerase subunit E'' compare
MMP_RS00725 -2.0 -6.4 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01880 -2.0 -7.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS00810 -2.0 -7.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS02280 -2.0 -1.3 DUF211 domain-containing protein compare
MMP_RS06315 -2.0 -0.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS04955 -2.0 -7.8 DNA topoisomerase I compare
MMP_RS01905 -2.0 -11.9 glycosyltransferase compare
MMP_RS05425 -1.9 -5.9 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS04850 -1.9 -15.2 UPF0254 family protein compare
MMP_RS06355 -1.9 -4.3 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07600 -1.9 -2.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00515 -1.9 -1.1 DUF655 domain-containing protein compare
MMP_RS07005 -1.8 -0.9 4Fe-4S binding protein compare
MMP_RS01890 -1.8 -4.5 nucleotide sugar dehydrogenase compare
MMP_RS07545 -1.8 -1.5 HTH domain-containing protein compare
MMP_RS00695 -1.8 -1.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS08155 -1.8 -6.6 hypothetical protein compare
MMP_RS03960 -1.8 -1.4 hypothetical protein compare
MMP_RS01325 -1.8 -2.5 dihydroneopterin aldolase family protein compare
MMP_RS05460 -1.8 -8.9 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS04685 -1.8 -4.3 DUF126 domain-containing protein compare
MMP_RS00520 -1.7 -2.1 RNA polymerase Rpb4 family protein compare
MMP_RS00315 -1.7 -6.2 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07090 -1.7 -7.4 tRNA (adenine-N1)-methyltransferase compare
MMP_RS07710 -1.7 -7.3 cell division protein FtsZ compare
MMP_RS02780 -1.7 -6.0 hypothetical protein compare
MMP_RS05640 -1.7 -6.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05440 -1.7 -8.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS06975 -1.7 -2.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06885 -1.7 -2.8 50S ribosome-binding GTPase compare
MMP_RS07875 -1.7 -5.3 hypothetical protein compare
MMP_RS06175 -1.7 -5.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS05540 -1.6 -2.6 hypothetical protein compare
MMP_RS06900 -1.6 -3.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS06105 -1.6 -7.7 hydrogenase maturation peptidase HycI compare
MMP_RS00300 -1.6 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05345 -1.6 -5.9 hypothetical protein compare
MMP_RS00720 -1.6 -8.2 metal-dependent hydrolase compare
MMP_RS04615 -1.6 -2.7 PDGLE domain-containing protein compare
MMP_RS01955 -1.6 -2.6 hypothetical protein compare
MMP_RS03205 -1.6 -1.7 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS09055 -1.6 -1.3 CAP domain-containing protein compare
MMP_RS03580 -1.5 -3.1 signal recognition particle-docking protein FtsY compare
MMP_RS07345 -1.5 -4.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS06940 -1.5 -3.6 polyprenyl diphosphate synthase compare
MMP_RS00895 -1.5 -3.7 hypothetical protein compare
MMP_RS06925 -1.5 -3.0 ribonuclease VapC4 compare
MMP_RS01335 -1.5 -2.6 prefoldin subunit beta compare
MMP_RS05555 -1.5 -1.9 DUF4040 domain-containing protein compare
MMP_RS08460 -1.5 -2.8 proteasome-activating nucleotidase compare
MMP_RS08820 -1.5 -4.7 hypothetical protein compare
MMP_RS03090 -1.5 -7.7 cation:proton antiporter compare
MMP_RS03450 -1.5 -2.4 glycine synthesis protein GlyXS (from data) compare
MMP_RS02165 -1.5 -5.4 tRNA-dihydrouridine synthase compare
MMP_RS01445 -1.5 -5.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Gly-Glu across organisms