Experiment set7IT074 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4844.1 -4.4 -1.2 FIG01210764: hypothetical protein compare
Xcc-8004.2335.1 -4.1 -4.9 Transport ATP-binding protein CydC compare
Xcc-8004.1651.1 -4.0 -10.6 putative Cytochrome bd2, subunit I compare
Xcc-8004.3041.1 -3.9 -4.4 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.2921.1 -3.9 -3.7 ferrous iron transport protein compare
Xcc-8004.2346.1 -3.4 -2.0 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.1568.1 -3.4 -2.5 Glycine cleavage system H protein compare
Xcc-8004.2334.1 -3.3 -7.9 Transport ATP-binding protein CydD compare
Xcc-8004.3346.1 -3.3 -2.3 hypothetical protein compare
Xcc-8004.2182.1 -3.2 -16.3 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2343.1 -3.1 -2.1 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3976.1 -3.1 -4.1 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2922.1 -3.1 -2.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.5368.1 -2.9 -3.7 FIG01210868: hypothetical protein compare
Xcc-8004.1241.1 -2.9 -6.3 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3304.1 -2.8 -1.0 FIG01211108: hypothetical protein compare
Xcc-8004.1652.1 -2.7 -8.1 putative Cytochrome bd2, subunit II compare
Xcc-8004.99.1 -2.7 -2.2 FIG01211055: hypothetical protein compare
Xcc-8004.1359.1 -2.6 -6.3 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.1118.1 -2.6 -1.5 hypothetical protein compare
Xcc-8004.1372.1 -2.5 -1.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1236.1 -2.5 -6.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.130.1 -2.5 -7.5 hypothetical protein compare
Xcc-8004.5122.1 -2.3 -2.9 hypothetical protein compare
Xcc-8004.2652.1 -2.2 -2.4 response regulator compare
Xcc-8004.3979.1 -2.2 -7.2 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.787.1 -2.2 -1.2 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.3686.1 -2.2 -5.7 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.5343.1 -2.2 -5.6 hypothetical protein compare
Xcc-8004.3728.1 -2.1 -1.9 hypothetical protein compare
Xcc-8004.5021.1 -2.1 -2.0 FIG01211474: hypothetical protein compare
Xcc-8004.2923.1 -2.0 -6.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.1365.1 -2.0 -1.5 FIG01211058: hypothetical protein compare
Xcc-8004.471.1 -1.9 -5.1 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.2920.1 -1.9 -7.2 Ferrous iron transport protein B compare
Xcc-8004.4620.1 -1.9 -5.4 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4457.1 -1.9 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.3576.1 -1.9 -7.4 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.2169.1 -1.9 -3.4 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1434.1 -1.9 -1.8 FIG000859: hypothetical protein YebC compare
Xcc-8004.2924.1 -1.8 -3.7 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4441.1 -1.8 -3.6 Tyrosine recombinase XerD compare
Xcc-8004.4039.1 -1.7 -2.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1763.1 -1.7 -2.0 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.689.1 -1.7 -1.4 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.2408.1 -1.6 -3.5 Mn-dependent transcriptional regulator MntR compare
Xcc-8004.3395.1 -1.6 -3.0 Transcriptional regulator, GntR family compare
Xcc-8004.3722.1 -1.6 -1.1 HrpB7 protein compare
Xcc-8004.1243.1 -1.6 -4.4 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.1138.1 -1.6 -3.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.5280.1 -1.6 -2.7 hypothetical protein compare
Xcc-8004.337.1 -1.6 -3.0 ATPase, AFG1 family compare
Xcc-8004.574.1 -1.6 -5.2 Di-/tripeptide transporter compare
Xcc-8004.429.1 -1.6 -1.9 hypothetical protein compare
Xcc-8004.401.1 -1.6 -1.7 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.3647.1 -1.6 -3.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.1334.1 -1.6 -1.3 hypothetical protein compare
Xcc-8004.2228.1 -1.6 -3.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.1205.1 -1.5 -2.2 hypothetical protein compare
Xcc-8004.4275.1 -1.5 -3.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.957.1 -1.5 -3.4 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.5203.1 -1.5 -1.5 Twin-arginine translocation protein TatB compare
Xcc-8004.4046.1 -1.5 -6.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3775.1 -1.4 -2.3 FIG001154: CcsA-related protein compare
Xcc-8004.1328.1 -1.4 -1.6 FIG01210090: hypothetical protein compare
Xcc-8004.409.1 -1.4 -1.9 hypothetical protein compare
Xcc-8004.1495.1 -1.4 -2.1 FIG01212489: hypothetical protein compare
Xcc-8004.601.1 -1.4 -4.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3321.1 -1.4 -1.8 FIG01209847: hypothetical protein compare
Xcc-8004.2337.1 -1.4 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.5114.1 -1.4 -5.1 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3958.1 -1.4 -1.1 Low molecular weight heat shock protein compare
Xcc-8004.127.1 -1.4 -1.5 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.319.1 -1.4 -6.8 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.623.1 -1.3 -1.5 Phosphoserine phosphatase compare
Xcc-8004.3310.1 -1.3 -3.8 Chromosome partition protein smc compare
Xcc-8004.713.1 -1.3 -0.8 FIG01210186: hypothetical protein compare
Xcc-8004.1357.1 -1.3 -3.1 FIG01209939: hypothetical protein compare
Xcc-8004.3049.1 -1.3 -4.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.236.1 -1.3 -1.4 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.645.1 -1.3 -1.2 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.4596.1 -1.3 -6.2 hypothetical protein compare
Xcc-8004.3212.1 -1.3 -3.0 phage-related integrase compare
Xcc-8004.1768.1 -1.3 -0.9 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.1727.1 -1.2 -1.5 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.5324.1 -1.2 -1.2 Mobile element protein compare
Xcc-8004.1811.1 -1.2 -2.3 extracellular serine protease compare
Xcc-8004.143.1 -1.2 -2.6 hypothetical protein compare
Xcc-8004.93.1 -1.2 -2.0 FIG01211857: hypothetical protein compare
Xcc-8004.569.1 -1.2 -2.8 FIG01209918: hypothetical protein compare
Xcc-8004.4810.1 -1.2 -5.0 hypothetical protein compare
Xcc-8004.3954.1 -1.2 -3.1 HflC protein compare
Xcc-8004.2892.1 -1.2 -2.3 FIG01210619: hypothetical protein compare
Xcc-8004.3726.1 -1.2 -1.3 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.1400.1 -1.2 -2.0 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.1891.1 -1.2 -1.6 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.4024.1 -1.2 -3.6 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.4534.1 -1.2 -2.5 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Xcc-8004.5252.1 -1.2 -4.1 FIG01210658: hypothetical protein compare
Xcc-8004.288.1 -1.2 -1.0 Ferredoxin compare
Xcc-8004.2074.1 -1.2 -3.2 Transcriptional regulator, MerR family compare
Xcc-8004.340.1 -1.2 -1.5 Organic hydroperoxide resistance protein compare
Xcc-8004.704.1 -1.1 -2.5 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) compare
Xcc-8004.3703.1 -1.1 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3742.1 -1.1 -1.6 Type III effector compare
Xcc-8004.2229.1 -1.1 -5.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Xcc-8004.3855.1 -1.1 -3.9 FIG01209965: hypothetical protein compare
Xcc-8004.3322.1 -1.1 -1.0 FIG01211446: hypothetical protein compare
Xcc-8004.3426.1 -1.1 -3.3 Chaperone protein DnaJ compare
Xcc-8004.4814.1 -1.1 -1.7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.318.1 -1.1 -3.8 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.4558.1 -1.1 -1.6 ABC transporter permease compare
Xcc-8004.117.1 -1.1 -1.8 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.4945.1 -1.1 -0.7 FIG01210349: hypothetical protein compare
Xcc-8004.1228.1 -1.1 -3.9 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.4239.1 -1.0 -2.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.986.1 -1.0 -2.1 hypothetical protein compare
Xcc-8004.3120.1 -1.0 -1.1 RNA-binding protein Hfq compare
Xcc-8004.4633.1 -1.0 -1.4 FIG01210488: hypothetical protein compare
Xcc-8004.1790.1 -1.0 -2.1 Zinc uptake regulation protein ZUR compare
Xcc-8004.4292.1 -1.0 -1.3 Taurine transport ATP-binding protein TauB compare
Xcc-8004.3655.1 -1.0 -0.8 FIG01210025: hypothetical protein compare
Xcc-8004.3783.1 -1.0 -4.4 Two-component system sensor protein compare
Xcc-8004.773.1 -1.0 -3.1 Transcriptional regulator marR family compare
Xcc-8004.4806.1 -1.0 -1.3 FIG01211609: hypothetical protein compare
Xcc-8004.1825.1 -1.0 -3.6 FIG01210006: hypothetical protein compare
Xcc-8004.1955.1 -1.0 -3.2 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.321.1 -1.0 -6.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.1914.1 -1.0 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.3848.1 -1.0 -1.7 FIG01212003: hypothetical protein compare
Xcc-8004.4510.1 -1.0 -0.9 ATP binding component of ABC-transporter compare
Xcc-8004.2559.1 -1.0 -1.3 hypothetical protein compare
Xcc-8004.4526.1 -1.0 -4.5 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.1064.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.4697.1 -0.9 -1.5 FIG01210654: hypothetical protein compare
Xcc-8004.385.1 -0.9 -1.3 FIG01212287: hypothetical protein compare
Xcc-8004.659.1 -0.9 -1.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3408.1 -0.9 -2.1 FIG01210869: hypothetical protein compare
Xcc-8004.397.1 -0.9 -2.7 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3689.1 -0.9 -4.2 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Xcc-8004.4529.1 -0.9 -0.9 FIG01210979: hypothetical protein compare
Xcc-8004.3812.1 -0.9 -1.6 DNA repair protein RadA compare
Xcc-8004.2199.1 -0.9 -1.1 Hemerythrin-like protein PA1673 compare
Xcc-8004.4446.1 -0.9 -3.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.3079.1 -0.9 -4.0 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Xcc-8004.5073.1 -0.9 -2.3 FIG01210860: hypothetical protein compare
Xcc-8004.997.1 -0.9 -1.9 Possible GRAM domain compare
Xcc-8004.4221.1 -0.9 -3.0 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.3955.1 -0.9 -2.9 HflK protein compare
Xcc-8004.353.1 -0.9 -1.5 FIG01210121: hypothetical protein compare
Xcc-8004.4416.1 -0.9 -3.4 hypothetical protein compare
Xcc-8004.3981.1 -0.9 -3.1 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.1361.1 -0.9 -0.9 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.4954.1 -0.9 -3.9 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.4285.1 -0.9 -3.9 two-component system sensor protein compare
Xcc-8004.4418.1 -0.9 -3.4 Transcriptional regulator, GntR family compare
Xcc-8004.2217.1 -0.9 -1.6 FIG01209779: hypothetical protein compare
Xcc-8004.1880.1 -0.9 -3.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.3670.1 -0.9 -1.5 Response regulator compare
Xcc-8004.4948.1 -0.9 -1.5 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.3881.1 -0.8 -1.3 hypothetical protein compare
Xcc-8004.2910.1 -0.8 -2.3 Regulatory protein, RpfE type compare
Xcc-8004.2626.1 -0.8 -2.5 Replication initiation protein compare
Xcc-8004.4984.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.3590.1 -0.8 -1.0 FIG01211013: hypothetical protein compare
Xcc-8004.576.1 -0.8 -1.6 FIG01210281: hypothetical protein compare
Xcc-8004.3040.1 -0.8 -1.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.3290.1 -0.8 -2.0 Poly(Hydroxyalcanoate) granule associated protein compare
Xcc-8004.5365.1 -0.8 -3.2 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.2935.1 -0.8 -5.5 Amino acid transporters compare
Xcc-8004.4251.1 -0.8 -1.2 hypothetical protein compare
Xcc-8004.4026.1 -0.8 -3.3 FIG01209666: hypothetical protein compare
Xcc-8004.5367.1 -0.8 -2.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.3320.1 -0.8 -0.9 FIG01209869: hypothetical protein compare
Xcc-8004.4908.1 -0.8 -1.0 hypothetical protein compare
Xcc-8004.869.1 -0.8 -1.3 Methanol dehydrogenase large subunit protein (EC 1.1.99.8) compare
Xcc-8004.1660.1 -0.8 -0.5 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.1488.1 -0.8 -1.9 Coenzyme PQQ synthesis protein B compare
Xcc-8004.4824.1 -0.8 -3.2 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.715.1 -0.8 -2.0 RNA polymerase sigma factor compare
Xcc-8004.1437.1 -0.8 -2.3 Kup system potassium uptake protein compare
Xcc-8004.92.1 -0.8 -2.5 Dihydrofolate reductase (EC 1.5.1.3) compare
Xcc-8004.2011.1 -0.8 -0.8 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4254.1 -0.8 -1.8 Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) compare
Xcc-8004.565.1 -0.8 -2.2 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.3942.1 -0.7 -1.2 RelE/StbE replicon stabilization toxin compare
Xcc-8004.2936.1 -0.7 -4.8 Amino acid transporters compare
Xcc-8004.298.1 -0.7 -2.1 Hypothetical protein YaeJ with similarity to translation release factor compare
Xcc-8004.3873.1 -0.7 -1.3 FIG01212144: hypothetical protein compare
Xcc-8004.4298.1 -0.7 -2.3 Hemin uptake protein compare
Xcc-8004.764.1 -0.7 -0.9 FIG01213873: hypothetical protein compare
Xcc-8004.3532.1 -0.7 -1.9 Bacterioferritin compare
Xcc-8004.4698.1 -0.7 -1.6 Methyl-accepting chemotaxis protein compare
Xcc-8004.5125.1 -0.7 -1.5 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.2449.1 -0.7 -1.9 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.1694.1 -0.7 -4.9 Ferrichrome-iron receptor compare
Xcc-8004.4805.1 -0.7 -1.4 FIG01211119: hypothetical protein compare
Xcc-8004.4653.1 -0.7 -5.0 amino acid transporter compare
Xcc-8004.2577.1 -0.7 -1.9 FIG034647: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.5202.1 -0.7 -1.2 Twin-arginine translocation protein TatC compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments