Experiment set7IT074 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_15970 -4.3 -3.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_10835 -4.1 -1.3 tRNA-Val compare
IAI47_00760 -4.1 -6.0 envelope stress response regulator transcription factor CpxR compare
IAI47_05420 -3.8 -2.1 PTS glucose transporter subunit IIA compare
IAI47_09040 -3.8 -2.0 NAD-dependent epimerase compare
IAI47_08085 -3.6 -5.5 helix-turn-helix domain-containing protein compare
IAI47_05070 -3.6 -1.1 outer membrane protein assembly factor BamB compare
IAI47_18215 -3.3 -2.4 Trk system potassium transporter TrkH compare
IAI47_08445 -3.1 -1.7 Holliday junction branch migration protein RuvA compare
IAI47_13950 -3.1 -1.9 PhoH family protein compare
IAI47_13695 -2.9 -0.9 colicin uptake protein TolR compare
IAI47_17900 -2.8 -2.0 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_16085 -2.6 -2.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_16995 -2.6 -2.4 protein YrbN compare
IAI47_08705 -2.4 -11.9 carboxy terminal-processing peptidase compare
IAI47_01365 -2.2 -2.5 inorganic phosphate transporter PitA compare
IAI47_02585 -2.1 -4.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_07350 -2.1 -0.9 hypothetical protein compare
IAI47_18145 -1.9 -2.2 elongation factor Tu compare
IAI47_04300 -1.8 -6.7 recombinase RecA compare
IAI47_00465 -1.8 -3.1 ribosome-dependent GTPase TypA compare
IAI47_11550 -1.7 -2.6 hypothetical protein compare
IAI47_08105 -1.6 -2.5 DinI family protein compare
IAI47_08440 -1.6 -1.4 crossover junction endodeoxyribonuclease RuvC compare
IAI47_00460 -1.6 -2.0 glutamate--ammonia ligase compare
IAI47_05090 -1.6 -3.5 hypothetical protein compare
IAI47_05155 -1.6 -11.3 polyphosphate kinase 1 compare
IAI47_20595 -1.5 -4.2 GhoT/OrtT family toxin compare
IAI47_07525 -1.5 -2.7 conjugal transfer protein TraD compare
IAI47_02090 -1.5 -3.3 elongation factor Tu compare
IAI47_00735 -1.5 -1.9 protein-export chaperone SecB compare
IAI47_09635 -1.4 -4.2 hypothetical protein compare
IAI47_00780 -1.4 -3.6 6-phosphofructokinase compare
IAI47_03375 -1.4 -7.7 peptide chain release factor 3 compare
IAI47_07450 -1.4 -1.8 winged helix-turn-helix domain-containing protein compare
IAI47_13065 -1.3 -2.0 DUF1418 family protein compare
IAI47_05660 -1.3 -5.7 serine protease compare
IAI47_07490 -1.3 -2.1 DNA-binding protein compare
IAI47_11375 -1.3 -1.3 hypothetical protein compare
IAI47_10575 -1.3 -3.3 hypothetical protein compare
IAI47_08045 -1.3 -2.0 NUDIX domain-containing protein compare
IAI47_08680 -1.2 -5.0 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_21665 -1.2 -1.4 DUF333 domain-containing protein compare
IAI47_11515 -1.2 -1.2 hypothetical protein compare
IAI47_07480 -1.2 -2.4 hypothetical protein compare
IAI47_12650 -1.2 -3.9 macrodomain Ter protein MatP compare
IAI47_02380 -1.2 -2.1 DNA-binding transcriptional regulator Fis compare
IAI47_06655 -1.2 -2.3 1-phosphofructokinase compare
IAI47_11480 -1.2 -1.7 hypothetical protein compare
IAI47_19940 -1.1 -2.1 hypothetical protein compare
IAI47_04800 -1.1 -0.8 RnfH family protein compare
IAI47_07165 -1.1 -1.5 exodeoxyribonuclease I compare
IAI47_17120 -1.1 -2.7 BolA family iron metabolism protein IbaG compare
IAI47_04835 -1.1 -5.6 ATP-dependent RNA helicase SrmB compare
IAI47_08065 -1.1 -3.5 acyltransferase compare
IAI47_06135 -1.1 -2.3 phosphohistidine phosphatase SixA compare
IAI47_06965 -1.1 -1.3 glycosyltransferase family 2 protein compare
IAI47_04400 -1.1 -4.7 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_16990 -1.1 -3.6 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_09145 -1.1 -3.7 UPF0259 family protein compare
IAI47_09380 -1.1 -4.5 peptide ABC transporter substrate-binding protein SapA compare
IAI47_15295 -1.0 -4.0 oxalurate catabolism protein HpxZ compare
IAI47_16095 -1.0 -2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_01940 -1.0 -2.6 DUF2559 family protein compare
IAI47_11475 -1.0 -0.5 hypothetical protein compare
IAI47_07355 -1.0 -4.4 winged helix-turn-helix domain-containing protein compare
IAI47_19945 -1.0 -0.6 hypothetical protein compare
IAI47_12920 -1.0 -2.8 thioredoxin-disulfide reductase compare
IAI47_21780 -1.0 -3.2 hypothetical protein compare
IAI47_18400 -1.0 -1.8 tyrosine recombinase XerC compare
IAI47_05525 -1.0 -1.3 tRNA-Ala compare
IAI47_11420 -1.0 -1.3 hypothetical protein compare
IAI47_14495 -1.0 -2.2 hypothetical protein compare
IAI47_05195 -1.0 -1.9 DnaA inactivator Hda compare
IAI47_11450 -1.0 -3.1 ankyrin repeat domain-containing protein compare
IAI47_07930 -0.9 -1.1 DUF2158 domain-containing protein compare
IAI47_21545 -0.9 -5.0 SgcJ/EcaC family oxidoreductase compare
IAI47_08590 -0.9 -1.9 hypothetical protein compare
IAI47_03400 -0.9 -3.9 deoxyribose-phosphate aldolase compare
IAI47_03680 -0.9 -6.4 transketolase compare
IAI47_07530 -0.9 -3.4 type III restriction-modification system endonuclease compare
IAI47_21790 -0.9 -3.4 helix-turn-helix domain-containing protein compare
IAI47_16520 -0.9 -5.5 hypothetical protein compare
IAI47_04335 -0.9 -1.7 tRNA-Arg compare
IAI47_07470 -0.9 -0.8 AlpA family transcriptional regulator compare
IAI47_08450 -0.9 -2.0 Holliday junction branch migration DNA helicase RuvB compare
IAI47_11635 -0.9 -2.7 hypothetical protein compare
IAI47_01530 -0.9 -3.9 DUF1145 family protein compare
IAI47_02515 -0.8 -3.3 transcriptional regulator ArgR compare
IAI47_16390 -0.8 -0.5 tRNA-Leu compare
IAI47_17020 -0.8 -1.6 30S ribosome-binding factor RbfA compare
IAI47_02255 -0.8 -5.2 DUF1992 domain-containing protein compare
IAI47_15540 -0.8 -5.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_11045 -0.8 -3.4 hypothetical protein compare
IAI47_15635 -0.8 -1.1 RNA polymerase-binding protein DksA compare
IAI47_18530 -0.8 -1.7 thioredoxin TrxA compare
IAI47_11500 -0.8 -1.6 type VI secretion system tip protein VgrG compare
IAI47_06940 -0.8 -0.5 tyrosine-protein kinase Wzc compare
IAI47_14945 -0.8 -1.7 pyrroline-5-carboxylate reductase compare
IAI47_03590 -0.8 -4.2 YggT family protein compare
IAI47_07030 -0.8 -2.8 HAD family hydrolase compare
IAI47_01125 -0.8 -3.6 stress response protein AzuC compare
IAI47_04865 -0.8 -1.3 SoxR-reducing system protein RseC compare
IAI47_02605 -0.8 -4.9 protease modulator HflC compare
IAI47_01780 -0.8 -1.8 Fe-S biogenesis protein NfuA compare
IAI47_02040 -0.7 -4.0 peptidylprolyl isomerase compare
IAI47_21360 -0.7 -3.2 transcriptional regulator compare
IAI47_11415 -0.7 -1.0 hypothetical protein compare
IAI47_00430 -0.7 -5.5 DNA polymerase I compare
IAI47_06245 -0.7 -2.0 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_17185 -0.7 -3.0 RNA polymerase factor sigma-54 compare
IAI47_19745 -0.7 -3.4 GNAT family N-acetyltransferase compare
IAI47_10945 -0.7 -1.9 vitamin B12 ABC transporter permease BtuC compare
IAI47_18705 -0.7 -3.5 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_15670 -0.7 -5.0 acyltransferase family protein compare
IAI47_06425 -0.7 -3.9 GNAT family N-acetyltransferase compare
IAI47_05120 -0.7 -1.7 DUF2158 domain-containing protein compare
IAI47_18765 -0.7 -2.3 damage-inducible protein J compare
IAI47_03195 -0.7 -2.0 cell division protein FtsP compare
IAI47_04775 -0.7 -1.2 SIR2 family protein compare
IAI47_11310 -0.7 -1.8 redox-regulated ATPase YchF compare
IAI47_13440 -0.7 -3.4 YbhQ family protein compare
IAI47_14070 -0.7 -3.7 GNAT family N-acetyltransferase compare
IAI47_07025 -0.7 -2.0 glycosyltransferase family 4 protein compare
IAI47_14750 -0.7 -3.2 phosphatidylglycerophosphatase A compare
IAI47_11425 -0.7 -2.0 hypothetical protein compare
IAI47_02260 -0.7 -2.7 Zn(2+)-responsive transcriptional regulator compare
IAI47_01830 -0.7 -4.8 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_18240 -0.7 -1.5 NAD(P)H-flavin reductase compare
IAI47_10430 -0.7 -1.2 hypothetical protein compare
IAI47_02990 -0.7 -3.4 hypothetical protein compare
IAI47_19320 -0.6 -3.1 LysE family translocator compare
IAI47_19490 -0.6 -2.8 DUF4102 domain-containing protein compare
IAI47_05460 -0.6 -2.4 DUF3820 family protein compare
IAI47_21670 -0.6 -2.7 LuxR family transcriptional regulator compare
IAI47_06400 -0.6 -1.1 NADH-quinone oxidoreductase subunit J compare
IAI47_12265 -0.6 -2.9 secY/secA suppressor protein compare
IAI47_06595 -0.6 -1.5 hypothetical protein compare
IAI47_14960 -0.6 -1.6 anti-adapter protein IraP compare
IAI47_02600 -0.6 -4.6 FtsH protease activity modulator HflK compare
IAI47_03550 -0.6 -4.4 membrane-bound lytic murein transglycosylase MltC compare
IAI47_09905 -0.6 -3.3 type II toxin-antitoxin system HipA family toxin compare
IAI47_13840 -0.6 -1.4 replication initiation negative regulator SeqA compare
IAI47_13625 -0.6 -3.4 CDF family zinc transporter ZitB compare
IAI47_01820 -0.6 -1.9 two-component system response regulator OmpR compare
IAI47_19825 -0.6 -3.1 EAL domain-containing protein compare
IAI47_05845 -0.6 -2.3 hypothetical protein compare
IAI47_06300 -0.6 -3.1 histidine ABC transporter ATP-binding protein HisP compare
IAI47_20415 -0.6 -3.6 two-component system response regulator DcuR compare
IAI47_09360 -0.6 -0.6 peptide ABC transporter ATP-binding protein SapF compare
IAI47_11770 -0.6 -2.5 flagellar brake protein compare
IAI47_04950 -0.6 -2.9 nitrogen regulatory protein P-II compare
IAI47_05710 -0.6 -2.3 hypothetical protein compare
IAI47_17385 -0.6 -1.5 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_12270 -0.6 -2.7 YceK/YidQ family lipoprotein compare
IAI47_01535 -0.6 -2.9 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_02850 -0.6 -3.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_10755 -0.6 -0.6 DUF1289 domain-containing protein compare
IAI47_08055 -0.6 -2.6 lysis protein compare
IAI47_16940 -0.6 -3.3 type 1 glutamine amidotransferase compare
IAI47_12865 -0.6 -3.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_18420 -0.6 -3.8 class I adenylate cyclase compare
IAI47_20830 -0.6 -2.6 DUF2000 domain-containing protein compare
IAI47_20660 -0.6 -3.2 lycopene beta-cyclase CrtY compare
IAI47_18830 -0.6 -0.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_13355 -0.6 -3.6 DMT family transporter compare
IAI47_20600 -0.6 -0.8 hypothetical protein compare
IAI47_04555 -0.6 -3.1 YgaC family protein compare
IAI47_18775 -0.6 -1.6 hypothetical protein compare
IAI47_05035 -0.6 -1.3 nucleoside-diphosphate kinase compare
IAI47_07880 -0.6 -2.5 hypothetical protein compare
IAI47_21080 -0.6 -1.3 transposase compare
IAI47_17965 -0.6 -3.9 glucose-6-phosphate isomerase compare
IAI47_02680 -0.6 -3.4 Opacity-associated protein A compare
IAI47_14170 -0.6 -2.0 hypothetical protein compare
IAI47_05680 -0.6 -2.8 hypothetical protein compare
IAI47_12545 -0.6 -0.8 general stress protein compare
IAI47_15150 -0.6 -3.4 DUF3289 family protein compare
IAI47_03820 -0.6 -1.6 site-specific tyrosine recombinase XerD compare
IAI47_18415 -0.6 -1.4 lipoprotein compare
IAI47_15880 -0.6 -1.2 DNA gyrase inhibitor YacG compare
IAI47_06010 -0.6 -2.9 hypothetical protein compare
IAI47_21250 -0.6 -1.9 helix-turn-helix domain-containing protein compare
IAI47_07335 -0.6 -3.6 hypothetical protein compare
IAI47_01350 -0.6 -3.2 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
IAI47_19935 -0.6 -1.9 hypothetical protein compare
IAI47_17815 -0.6 -4.9 excinuclease ABC subunit UvrA compare
IAI47_01345 -0.6 -3.7 oligopeptidase A compare
IAI47_14920 -0.5 -1.9 pyrimidine/purine nucleoside phosphorylase compare
IAI47_19315 -0.5 -1.8 type II toxin-antitoxin system Phd/YefM family antitoxin compare
IAI47_18250 -0.5 -2.5 transcription/translation regulatory transformer protein RfaH compare
IAI47_19355 -0.5 -1.5 response regulator compare
IAI47_13725 -0.5 -2.1 cytochrome ubiquinol oxidase subunit I compare
IAI47_13685 -0.5 -1.3 Tol-Pal system protein TolB compare
IAI47_14525 -0.5 -2.3 50S ribosomal protein L36 compare
IAI47_09945 -0.5 -1.9 hydroxyisourate hydrolase compare
IAI47_20375 -0.5 -2.8 TetR family transcriptional regulator compare
IAI47_01875 -0.5 -1.0 hypothetical protein compare
IAI47_11655 -0.5 -0.8 hypothetical protein compare
IAI47_14200 -0.5 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 across organisms