Experiment set7IT073 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4510.1 -5.4 -2.8 ATP binding component of ABC-transporter compare
Xcc-8004.2879.1 -4.9 -1.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4039.1 -4.6 -3.2 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1436.1 -3.3 -2.2 Holliday junction DNA helicase RuvA compare
Xcc-8004.3041.1 -3.2 -3.3 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.401.1 -3.1 -2.7 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.2922.1 -3.0 -2.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.4620.1 -2.9 -8.4 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1241.1 -2.4 -4.9 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.1137.1 -2.4 -2.1 FIG006231: RNA-binding protein compare
Xcc-8004.2652.1 -2.3 -2.1 response regulator compare
Xcc-8004.1372.1 -2.2 -2.2 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2182.1 -2.2 -10.7 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.3321.1 -2.1 -1.8 FIG01209847: hypothetical protein compare
Xcc-8004.574.1 -2.1 -7.7 Di-/tripeptide transporter compare
Xcc-8004.2923.1 -2.1 -8.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.2921.1 -2.1 -2.9 ferrous iron transport protein compare
Xcc-8004.4810.1 -2.1 -6.7 hypothetical protein compare
Xcc-8004.4596.1 -2.0 -7.4 hypothetical protein compare
Xcc-8004.5253.1 -2.0 -1.3 hypothetical protein compare
Xcc-8004.1615.1 -1.9 -2.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.429.1 -1.9 -1.7 hypothetical protein compare
Xcc-8004.741.1 -1.9 -2.4 hypothetical protein compare
Xcc-8004.3230.1 -1.9 -2.5 Phage DNA invertase compare
Xcc-8004.1316.1 -1.9 -1.8 hypothetical protein compare
Xcc-8004.1790.1 -1.8 -2.9 Zinc uptake regulation protein ZUR compare
Xcc-8004.3979.1 -1.7 -6.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2335.1 -1.7 -5.0 Transport ATP-binding protein CydC compare
Xcc-8004.1236.1 -1.7 -4.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1228.1 -1.7 -5.7 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.3721.1 -1.7 -1.3 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.3976.1 -1.7 -3.0 2-methylaconitate cis-trans isomerase compare
Xcc-8004.3049.1 -1.6 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3054.1 -1.6 -1.6 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3728.1 -1.6 -1.7 hypothetical protein compare
Xcc-8004.5133.1 -1.6 -1.5 FIG01212313: hypothetical protein compare
Xcc-8004.5203.1 -1.6 -1.7 Twin-arginine translocation protein TatB compare
Xcc-8004.318.1 -1.6 -5.9 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.4046.1 -1.6 -7.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3310.1 -1.6 -3.7 Chromosome partition protein smc compare
Xcc-8004.4538.1 -1.6 -1.7 hypothetical protein compare
Xcc-8004.4225.1 -1.5 -0.9 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.957.1 -1.5 -3.6 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1359.1 -1.5 -4.5 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.645.1 -1.5 -1.4 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.2920.1 -1.5 -5.6 Ferrous iron transport protein B compare
Xcc-8004.5168.1 -1.5 -1.0 hypothetical protein compare
Xcc-8004.1108.1 -1.5 -1.9 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.4024.1 -1.4 -4.6 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.471.1 -1.4 -4.0 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.1651.1 -1.4 -4.3 putative Cytochrome bd2, subunit I compare
Xcc-8004.2334.1 -1.4 -4.5 Transport ATP-binding protein CydD compare
Xcc-8004.3753.1 -1.4 -2.1 putative secreted protein compare
Xcc-8004.171.1 -1.3 -1.0 hypothetical protein compare
Xcc-8004.3752.1 -1.3 -1.6 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.3040.1 -1.3 -2.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.236.1 -1.3 -1.2 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.127.1 -1.3 -1.7 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.5343.1 -1.3 -5.1 hypothetical protein compare
Xcc-8004.337.1 -1.3 -2.0 ATPase, AFG1 family compare
Xcc-8004.4285.1 -1.3 -5.3 two-component system sensor protein compare
Xcc-8004.3855.1 -1.3 -4.6 FIG01209965: hypothetical protein compare
Xcc-8004.3783.1 -1.3 -4.2 Two-component system sensor protein compare
Xcc-8004.1243.1 -1.2 -3.1 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.4699.1 -1.2 -1.2 Flagellar motor protein compare
Xcc-8004.726.1 -1.2 -0.8 Putative preQ0 transporter compare
Xcc-8004.1622.1 -1.2 -2.8 Membrane protein with DUF350 domain compare
Xcc-8004.1266.1 -1.2 -2.5 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.689.1 -1.2 -1.3 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.4820.1 -1.2 -1.1 FIG01211334: hypothetical protein compare
Xcc-8004.1138.1 -1.1 -2.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.659.1 -1.1 -1.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2011.1 -1.1 -1.4 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4671.1 -1.1 -2.3 FIG01212254: hypothetical protein compare
Xcc-8004.3479.1 -1.1 -1.9 aklaviketone reductase compare
Xcc-8004.4507.1 -1.1 -3.2 Glycosyltransferase compare
Xcc-8004.4241.1 -1.1 -1.9 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.319.1 -1.1 -5.4 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.2337.1 -1.1 -3.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.1705.1 -1.1 -1.4 FIG01209877: hypothetical protein compare
Xcc-8004.350.1 -1.1 -2.5 hypothetical protein compare
Xcc-8004.1652.1 -1.1 -5.3 putative Cytochrome bd2, subunit II compare
Xcc-8004.3632.1 -1.1 -2.1 FIG01209689: hypothetical protein compare
Xcc-8004.3120.1 -1.0 -2.0 RNA-binding protein Hfq compare
Xcc-8004.269.1 -1.0 -2.6 FIG136845: Rhodanese-related sulfurtransferase compare
Xcc-8004.5214.1 -1.0 -3.2 sal operon transcriptional repressor compare
Xcc-8004.2475.1 -1.0 -2.2 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Xcc-8004.1032.1 -1.0 -3.4 Sensor histidine kinase compare
Xcc-8004.3438.1 -1.0 -6.0 Serine peptidase compare
Xcc-8004.4368.1 -1.0 -1.4 FIG01209977: hypothetical protein compare
Xcc-8004.1880.1 -1.0 -3.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.4984.1 -1.0 -1.7 hypothetical protein compare
Xcc-8004.4844.1 -1.0 -0.6 FIG01210764: hypothetical protein compare
Xcc-8004.2434.1 -1.0 -2.3 hypothetical protein compare
Xcc-8004.3832.1 -1.0 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.1680.1 -1.0 -4.1 FIG006611: nucleotidyltransferase compare
Xcc-8004.4477.1 -1.0 -1.4 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.4945.1 -1.0 -0.7 FIG01210349: hypothetical protein compare
Xcc-8004.494.1 -1.0 -2.6 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.4829.1 -1.0 -2.4 Transamidase GatB domain protein compare
Xcc-8004.5324.1 -1.0 -1.7 Mobile element protein compare
Xcc-8004.4954.1 -1.0 -3.5 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.4503.1 -0.9 -3.5 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.5185.1 -0.9 -2.2 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.298.1 -0.9 -2.2 Hypothetical protein YaeJ with similarity to translation release factor compare
Xcc-8004.4065.1 -0.9 -2.9 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.1822.1 -0.9 -1.4 Transcriptional regulator, MarR family compare
Xcc-8004.1660.1 -0.9 -0.6 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.4329.1 -0.9 -0.9 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.691.1 -0.9 -2.4 Dienelactone hydrolase compare
Xcc-8004.4514.1 -0.9 -6.2 Glycosyltransferase compare
Xcc-8004.1727.1 -0.9 -1.1 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.5122.1 -0.9 -1.2 hypothetical protein compare
Xcc-8004.4976.1 -0.9 -5.3 hypothetical protein compare
Xcc-8004.601.1 -0.9 -3.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.3669.1 -0.9 -2.9 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) compare
Xcc-8004.4313.1 -0.9 -1.6 hypothetical protein compare
Xcc-8004.5202.1 -0.9 -2.3 Twin-arginine translocation protein TatC compare
Xcc-8004.5039.1 -0.9 -1.8 FIG032621: Hydrolase, alpha/beta hydrolase fold family compare
Xcc-8004.1499.1 -0.9 -2.3 ADP-ribosylglycohydrolase family protein compare
Xcc-8004.2319.1 -0.9 -2.4 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.4788.1 -0.9 -0.9 FIG01210406: hypothetical protein compare
Xcc-8004.1210.1 -0.9 -3.3 D-Glucuronolactone:NAD+ oxidoreductase (EC 1.2.1.3) compare
Xcc-8004.1118.1 -0.9 -1.0 hypothetical protein compare
Xcc-8004.3385.1 -0.8 -2.2 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.2497.1 -0.8 -0.6 Mobile element protein compare
Xcc-8004.5268.1 -0.8 -0.8 Mobile element protein compare
Xcc-8004.3958.1 -0.8 -1.1 Low molecular weight heat shock protein compare
Xcc-8004.4250.1 -0.8 -0.9 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.2385.1 -0.8 -4.7 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.2910.1 -0.8 -2.2 Regulatory protein, RpfE type compare
Xcc-8004.375.1 -0.8 -0.8 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
Xcc-8004.1658.1 -0.8 -3.3 hypothetical protein compare
Xcc-8004.1694.1 -0.8 -5.2 Ferrichrome-iron receptor compare
Xcc-8004.4221.1 -0.8 -2.4 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.3608.1 -0.8 -1.5 FIG024285: Hypothetical protein compare
Xcc-8004.2936.1 -0.8 -5.6 Amino acid transporters compare
Xcc-8004.4292.1 -0.8 -1.4 Taurine transport ATP-binding protein TauB compare
Xcc-8004.130.1 -0.8 -2.6 hypothetical protein compare
Xcc-8004.703.1 -0.8 -0.7 hypothetical protein compare
Xcc-8004.5224.1 -0.8 -1.3 bleomycin resistance protein compare
Xcc-8004.4301.1 -0.8 -1.9 Nucleoside permease NupC compare
Xcc-8004.2383.1 -0.8 -2.0 FIG01211288: hypothetical protein compare
Xcc-8004.3154.1 -0.8 -2.3 Probable low-affinity inorganic phosphate transporter compare
Xcc-8004.3080.1 -0.8 -4.9 Galactonate dehydratase (EC 4.2.1.6) compare
Xcc-8004.2935.1 -0.8 -5.7 Amino acid transporters compare
Xcc-8004.1711.1 -0.8 -4.3 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Xcc-8004.4340.1 -0.8 -1.6 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Xcc-8004.3451.1 -0.8 -1.0 hypothetical protein compare
Xcc-8004.3426.1 -0.8 -2.9 Chaperone protein DnaJ compare
Xcc-8004.666.1 -0.8 -2.6 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase-related protein compare
Xcc-8004.2569.1 -0.8 -1.4 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.1710.1 -0.7 -2.3 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.5064.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.4371.1 -0.7 -2.5 rRNA small subunit methyltransferase I compare
Xcc-8004.1162.1 -0.7 -1.8 FIG01210644: hypothetical protein compare
Xcc-8004.3072.1 -0.7 -0.7 hypothetical protein compare
Xcc-8004.1380.1 -0.7 -0.9 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.4527.1 -0.7 -3.9 ATP-dependent RNA helicase RhlE compare
Xcc-8004.1811.1 -0.7 -0.9 extracellular serine protease compare
Xcc-8004.3794.1 -0.7 -1.0 Mobile element protein compare
Xcc-8004.1720.1 -0.7 -1.3 UPF0301 protein YqgE compare
Xcc-8004.1955.1 -0.7 -3.0 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.2945.1 -0.7 -1.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.4890.1 -0.7 -5.3 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.1567.1 -0.7 -2.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.2012.1 -0.7 -2.3 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.3470.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.3395.1 -0.7 -1.5 Transcriptional regulator, GntR family compare
Xcc-8004.1015.1 -0.7 -1.2 ThiJ/PfpI family protein compare
Xcc-8004.2270.1 -0.7 -1.9 Glutathione S-transferase (EC 2.5.1.18) compare
Xcc-8004.386.1 -0.7 -1.2 LysR family transcriptional regulator STM3121 compare
Xcc-8004.3798.1 -0.7 -0.8 Anti-sigma B factor RsbT compare
Xcc-8004.3498.1 -0.7 -0.5 hypothetical protein compare
Xcc-8004.1329.1 -0.7 -1.3 Virulence regulator compare
Xcc-8004.2013.1 -0.7 -2.3 Superoxide dismutase [Fe] (EC 1.15.1.1) compare
Xcc-8004.4568.1 -0.7 -0.9 FIG01210028: hypothetical protein compare
Xcc-8004.1282.1 -0.7 -2.4 sulfur deprivation response regulator compare
Xcc-8004.598.1 -0.7 -2.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3722.1 -0.7 -0.7 HrpB7 protein compare
Xcc-8004.4231.1 -0.7 -0.7 two-component system regulatory protein compare
Xcc-8004.4310.1 -0.7 -2.2 Outer membrane porin F compare
Xcc-8004.3340.1 -0.7 -2.5 FIG01209728: hypothetical protein compare
Xcc-8004.1007.1 -0.7 -0.7 acetylxylan esterase compare
Xcc-8004.3459.1 -0.7 -1.5 FIG01212836: hypothetical protein compare
Xcc-8004.2160.1 -0.7 -1.9 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Xcc-8004.2961.1 -0.6 -0.5 PROBABLE HEMAGGLUTININ-RELATED PROTEIN compare
Xcc-8004.2655.1 -0.6 -1.5 FIG024738: Hypothetical protein compare
Xcc-8004.1135.1 -0.6 -1.0 FIG01210448: hypothetical protein compare
Xcc-8004.4246.1 -0.6 -2.9 FIG01212910: hypothetical protein compare
Xcc-8004.1809.1 -0.6 -0.7 extracellular serine protease compare
Xcc-8004.2317.1 -0.6 -1.8 OsmC/Ohr family protein compare
Xcc-8004.2059.1 -0.6 -1.4 hypothetical protein compare
Xcc-8004.366.1 -0.6 -1.9 hypothetical protein compare
Xcc-8004.2662.1 -0.6 -1.2 probable membrane protein YPO3302 compare
Xcc-8004.5231.1 -0.6 -1.2 hypothetical protein compare
Xcc-8004.4700.1 -0.6 -1.2 FIG01210206: hypothetical protein compare
Xcc-8004.2949.1 -0.6 -1.1 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.4848.1 -0.6 -4.1 Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) compare
Xcc-8004.1455.1 -0.6 -1.9 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment