Experiment set7IT073 for Klebsiella michiganensis M5al
LB with Cephalothin sodium salt 0.16 mg/ml
Group: stressMedia: LB + Cephalothin sodium salt (0.16 mg/ml)
Culturing: Koxy_ML2, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Adam on 27-Apr-17
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1807 A6
Specific Phenotypes
For 22 genes in this experiment
For stress Cephalothin sodium salt in Klebsiella michiganensis M5al
For stress Cephalothin sodium salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ubiquinone and menaquinone biosynthesis
- Tryptophan metabolism
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Ascorbate and aldarate metabolism
- Pyrimidine metabolism
- Glycine, serine and threonine metabolism
- Penicillin and cephalosporin biosynthesis
- beta-Lactam resistance
- Histidine metabolism
- Tyrosine metabolism
- Benzoxazinone biosynthesis
- Other glycan degradation
- Aminosugars metabolism
- Glycosphingolipid biosynthesis - globo series
- Glycosphingolipid biosynthesis - ganglio series
- Naphthalene and anthracene degradation
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of siderophore group nonribosomal peptides
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| D-serine degradation | 3 | 3 | 3 |
| L-cysteine degradation II | 3 | 3 | 2 |
| L-serine degradation | 3 | 3 | 2 |
| L-tryptophan degradation II (via pyruvate) | 3 | 3 | 2 |
| pseudouridine degradation | 2 | 2 | 1 |
| peptidoglycan recycling II | 10 | 7 | 5 |
| felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis | 5 | 2 | 2 |
| peptidoglycan recycling I | 14 | 14 | 5 |
| L-methionine biosynthesis II | 6 | 5 | 2 |
| chitin degradation II (Vibrio) | 6 | 3 | 2 |
| glycine betaine degradation III | 7 | 4 | 2 |
| glycine betaine degradation I | 8 | 4 | 2 |
| L-mimosine degradation | 8 | 4 | 2 |
| glutathione-mediated detoxification I | 8 | 3 | 2 |
| chitin degradation III (Serratia) | 7 | 3 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | 15 | 13 | 2 |
| purine nucleobases degradation II (anaerobic) | 24 | 17 | 2 |