Experiment set7IT072 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3041.1 -5.1 -3.5 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.4510.1 -5.0 -2.5 ATP binding component of ABC-transporter compare
Xcc-8004.456.1 -4.6 -2.3 carbonic anhydrase, family 3 compare
Xcc-8004.5133.1 -4.2 -1.7 FIG01212313: hypothetical protein compare
Xcc-8004.236.1 -4.1 -2.4 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.340.1 -4.0 -3.3 Organic hydroperoxide resistance protein compare
Xcc-8004.4529.1 -4.0 -1.6 FIG01210979: hypothetical protein compare
Xcc-8004.1118.1 -3.9 -1.6 hypothetical protein compare
Xcc-8004.2110.1 -3.8 -1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3451.1 -3.6 -2.9 hypothetical protein compare
Xcc-8004.4039.1 -3.5 -3.4 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.3721.1 -3.5 -2.4 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.2672.1 -3.4 -2.7 hypothetical protein compare
Xcc-8004.3698.1 -3.1 -1.8 hypothetical protein compare
Xcc-8004.623.1 -3.0 -2.1 Phosphoserine phosphatase compare
Xcc-8004.659.1 -2.9 -2.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2182.1 -2.8 -13.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.713.1 -2.7 -1.1 FIG01210186: hypothetical protein compare
Xcc-8004.3898.1 -2.7 -1.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.2922.1 -2.6 -1.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.2339.1 -2.6 -1.8 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.1359.1 -2.5 -6.1 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3728.1 -2.4 -1.9 hypothetical protein compare
Xcc-8004.2652.1 -2.3 -2.1 response regulator compare
Xcc-8004.5021.1 -2.3 -1.7 FIG01211474: hypothetical protein compare
Xcc-8004.3346.1 -2.3 -2.7 hypothetical protein compare
Xcc-8004.1236.1 -2.3 -5.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4620.1 -2.2 -6.8 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.951.1 -2.2 -1.3 General secretion pathway protein M compare
Xcc-8004.3676.1 -2.2 -3.3 Translation elongation factor LepA compare
Xcc-8004.2923.1 -2.2 -7.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.2924.1 -2.2 -5.3 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.2921.1 -2.2 -3.3 ferrous iron transport protein compare
Xcc-8004.3576.1 -2.1 -7.5 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1372.1 -2.1 -1.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.3979.1 -2.1 -7.6 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3976.1 -2.1 -3.0 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2335.1 -2.1 -5.2 Transport ATP-binding protein CydC compare
Xcc-8004.4384.1 -2.1 -1.8 hypothetical protein compare
Xcc-8004.1616.1 -2.0 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.2614.1 -2.0 -2.1 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.1205.1 -2.0 -2.8 hypothetical protein compare
Xcc-8004.1652.1 -2.0 -5.8 putative Cytochrome bd2, subunit II compare
Xcc-8004.574.1 -2.0 -6.7 Di-/tripeptide transporter compare
Xcc-8004.3757.1 -2.0 -2.2 Mobile element protein compare
Xcc-8004.1241.1 -2.0 -4.3 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.337.1 -2.0 -2.6 ATPase, AFG1 family compare
Xcc-8004.4168.1 -2.0 -2.9 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.3054.1 -1.9 -1.4 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4732.1 -1.9 -1.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1416.1 -1.9 -3.0 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.4327.1 -1.9 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.5367.1 -1.9 -5.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.3647.1 -1.8 -3.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.2569.1 -1.8 -2.1 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.2529.1 -1.8 -3.2 FIG01210734: hypothetical protein compare
Xcc-8004.3395.1 -1.8 -2.3 Transcriptional regulator, GntR family compare
Xcc-8004.4982.1 -1.8 -1.5 Protein yjbJ compare
Xcc-8004.3923.1 -1.8 -1.2 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4292.1 -1.7 -2.0 Taurine transport ATP-binding protein TauB compare
Xcc-8004.2337.1 -1.6 -4.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.319.1 -1.6 -7.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.130.1 -1.6 -5.3 hypothetical protein compare
Xcc-8004.4373.1 -1.6 -2.8 LppC putative lipoprotein compare
Xcc-8004.3459.1 -1.6 -2.1 FIG01212836: hypothetical protein compare
Xcc-8004.1243.1 -1.6 -4.8 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.1437.1 -1.6 -4.6 Kup system potassium uptake protein compare
Xcc-8004.2334.1 -1.5 -5.3 Transport ATP-binding protein CydD compare
Xcc-8004.1316.1 -1.5 -1.5 hypothetical protein compare
Xcc-8004.1601.1 -1.5 -4.0 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.1914.1 -1.5 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.3222.1 -1.5 -1.0 Mobile element protein compare
Xcc-8004.1727.1 -1.5 -1.7 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.5087.1 -1.5 -2.5 FIG027190: Putative transmembrane protein compare
Xcc-8004.4013.1 -1.5 -1.3 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.4631.1 -1.5 -3.2 hypothetical protein compare
Xcc-8004.3479.1 -1.4 -1.4 aklaviketone reductase compare
Xcc-8004.410.1 -1.4 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3783.1 -1.4 -3.8 Two-component system sensor protein compare
Xcc-8004.4233.1 -1.4 -1.3 two-component system sensor protein compare
Xcc-8004.5114.1 -1.4 -5.1 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3710.1 -1.4 -1.5 hypothetical protein compare
Xcc-8004.1486.1 -1.4 -1.4 Coenzyme PQQ synthesis protein D compare
Xcc-8004.5122.1 -1.4 -1.2 hypothetical protein compare
Xcc-8004.4908.1 -1.4 -1.5 hypothetical protein compare
Xcc-8004.5363.1 -1.4 -1.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.3402.1 -1.4 -2.2 FIG01210246: hypothetical protein compare
Xcc-8004.5368.1 -1.4 -3.0 FIG01210868: hypothetical protein compare
Xcc-8004.556.1 -1.4 -2.5 component of multidrug efflux system compare
Xcc-8004.2900.1 -1.4 -3.7 response regulator compare
Xcc-8004.3660.1 -1.4 -2.5 Cold shock protein CspD compare
Xcc-8004.1808.1 -1.4 -2.0 L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122) compare
Xcc-8004.4810.1 -1.4 -5.8 hypothetical protein compare
Xcc-8004.2213.1 -1.3 -1.6 FIG01210598: hypothetical protein compare
Xcc-8004.4221.1 -1.3 -3.1 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.1365.1 -1.3 -1.0 FIG01211058: hypothetical protein compare
Xcc-8004.2228.1 -1.3 -3.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.3431.1 -1.3 -1.1 DNA repair protein RecN compare
Xcc-8004.270.1 -1.3 -2.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.4046.1 -1.3 -5.7 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1619.1 -1.3 -1.8 PspA/IM30 family protein compare
Xcc-8004.4329.1 -1.3 -0.8 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.3505.1 -1.3 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1651.1 -1.3 -4.0 putative Cytochrome bd2, subunit I compare
Xcc-8004.2357.1 -1.3 -2.9 Segregation and condensation protein B compare
Xcc-8004.1228.1 -1.3 -4.3 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.3855.1 -1.3 -3.5 FIG01209965: hypothetical protein compare
Xcc-8004.1512.1 -1.3 -1.9 RNA polymerase sigma-70 factor compare
Xcc-8004.2346.1 -1.3 -1.4 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.5190.1 -1.2 -3.2 3-dehydroquinate dehydratase compare
Xcc-8004.5335.1 -1.2 -1.5 FIG01214241: hypothetical protein compare
Xcc-8004.3686.1 -1.2 -3.0 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.2422.1 -1.2 -1.9 Putative stress-responsive transcriptional regulator compare
Xcc-8004.4596.1 -1.2 -4.5 hypothetical protein compare
Xcc-8004.3981.1 -1.2 -3.0 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.601.1 -1.2 -3.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.4430.1 -1.2 -1.0 General secretion pathway protein G compare
Xcc-8004.2160.1 -1.2 -3.4 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Xcc-8004.530.1 -1.2 -2.0 hypothetical protein compare
Xcc-8004.417.1 -1.2 -2.4 hypothetical protein compare
Xcc-8004.5343.1 -1.2 -3.0 hypothetical protein compare
Xcc-8004.3954.1 -1.2 -2.5 HflC protein compare
Xcc-8004.2389.1 -1.2 -1.0 protein of unknown function DUF1244 compare
Xcc-8004.321.1 -1.2 -6.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.649.1 -1.2 -1.3 hypothetical protein compare
Xcc-8004.4403.1 -1.2 -1.9 Arsenate reductase (EC 1.20.4.1) compare
Xcc-8004.1244.1 -1.2 -4.0 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.2532.1 -1.1 -2.8 hypothetical protein compare
Xcc-8004.1334.1 -1.1 -1.0 hypothetical protein compare
Xcc-8004.3536.1 -1.1 -3.2 FIG01210913: hypothetical protein compare
Xcc-8004.4814.1 -1.1 -1.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.1839.1 -1.1 -0.8 FIG01210863: hypothetical protein compare
Xcc-8004.4976.1 -1.1 -6.3 hypothetical protein compare
Xcc-8004.5203.1 -1.1 -1.1 Twin-arginine translocation protein TatB compare
Xcc-8004.5140.1 -1.1 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.1943.1 -1.1 -1.7 FIG01211831: hypothetical protein compare
Xcc-8004.3955.1 -1.1 -2.9 HflK protein compare
Xcc-8004.3401.1 -1.1 -0.9 FIG01209914: hypothetical protein compare
Xcc-8004.1247.1 -1.1 -2.7 Cysteine synthase (EC 2.5.1.47) compare
Xcc-8004.2935.1 -1.1 -6.8 Amino acid transporters compare
Xcc-8004.1226.1 -1.1 -1.1 FIG01210021: hypothetical protein compare
Xcc-8004.3211.1 -1.1 -1.6 protein of unknown function DUF88 compare
Xcc-8004.3754.1 -1.1 -1.4 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.2169.1 -1.1 -1.5 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1763.1 -1.1 -1.6 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.3689.1 -1.1 -4.9 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Xcc-8004.936.1 -1.1 -1.1 FIG01209778: hypothetical protein compare
Xcc-8004.3632.1 -1.1 -1.2 FIG01209689: hypothetical protein compare
Xcc-8004.1007.1 -1.1 -0.7 acetylxylan esterase compare
Xcc-8004.1568.1 -1.1 -1.0 Glycine cleavage system H protein compare
Xcc-8004.2920.1 -1.0 -3.3 Ferrous iron transport protein B compare
Xcc-8004.318.1 -1.0 -3.6 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.5024.1 -1.0 -2.5 FIG01210241: hypothetical protein compare
Xcc-8004.1135.1 -1.0 -1.0 FIG01210448: hypothetical protein compare
Xcc-8004.1328.1 -1.0 -1.4 FIG01210090: hypothetical protein compare
Xcc-8004.2949.1 -1.0 -1.3 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.1453.1 -1.0 -1.7 hypothetical protein compare
Xcc-8004.1622.1 -1.0 -1.8 Membrane protein with DUF350 domain compare
Xcc-8004.2230.1 -1.0 -2.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.1962.1 -1.0 -2.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.4250.1 -1.0 -1.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.2910.1 -1.0 -2.7 Regulatory protein, RpfE type compare
Xcc-8004.3875.1 -1.0 -0.6 FIG01212144: hypothetical protein compare
Xcc-8004.4824.1 -1.0 -4.2 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3281.1 -1.0 -2.9 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4844.1 -1.0 -0.6 FIG01210764: hypothetical protein compare
Xcc-8004.4224.1 -1.0 -1.9 Hydrogen peroxide-inducible genes activator compare
Xcc-8004.4954.1 -1.0 -3.4 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.4170.1 -1.0 -1.2 LSU ribosomal protein L25p compare
Xcc-8004.837.1 -1.0 -0.8 FIG01210690: hypothetical protein compare
Xcc-8004.716.1 -0.9 -2.8 Fe2+-dicitrate sensor, membrane component compare
Xcc-8004.1484.1 -0.9 -2.3 FIG01210307: hypothetical protein compare
Xcc-8004.3968.1 -0.9 -1.7 Mobile element protein compare
Xcc-8004.2653.1 -0.9 -2.2 hypothetical protein compare
Xcc-8004.5268.1 -0.9 -1.1 Mobile element protein compare
Xcc-8004.1764.1 -0.9 -3.1 FIG01209971: hypothetical protein compare
Xcc-8004.4649.1 -0.9 -2.8 Glycosyl transferase, family 2 compare
Xcc-8004.2321.1 -0.9 -2.4 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.3120.1 -0.9 -1.1 RNA-binding protein Hfq compare
Xcc-8004.280.1 -0.9 -3.3 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.598.1 -0.9 -3.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4112.1 -0.9 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1841.1 -0.9 -1.4 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.1714.1 -0.9 -2.8 Twitching motility protein PilT compare
Xcc-8004.990.1 -0.9 -2.6 FIG01210796: hypothetical protein compare
Xcc-8004.787.1 -0.9 -0.6 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.2930.1 -0.9 -0.8 hypothetical protein compare
Xcc-8004.4098.1 -0.9 -1.8 FIG01211222: hypothetical protein compare
Xcc-8004.1790.1 -0.9 -1.7 Zinc uptake regulation protein ZUR compare
Xcc-8004.3328.1 -0.9 -2.9 Kynurenine 3-monooxygenase (EC 1.14.13.9) compare
Xcc-8004.5202.1 -0.9 -2.2 Twin-arginine translocation protein TatC compare
Xcc-8004.2358.1 -0.9 -3.5 Segregation and condensation protein A compare
Xcc-8004.4065.1 -0.9 -2.9 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.2844.1 -0.9 -3.0 FIG01212716: hypothetical protein compare
Xcc-8004.4105.1 -0.9 -1.8 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.683.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.4231.1 -0.9 -0.7 two-component system regulatory protein compare
Xcc-8004.3014.1 -0.9 -1.8 putative ATPase, AAA+ family protein compare
Xcc-8004.2536.1 -0.9 -3.2 FIG01210852: hypothetical protein compare
Xcc-8004.1380.1 -0.9 -0.8 COG2827: putative endonuclease containing a URI domain compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments