Experiment set7IT071 for Phaeobacter inhibens DSM 17395

Compare to:

L-Serine carbon source

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c08600 +1.7 14.3 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c08590 +1.7 13.4 heme NO binding domain-containing protein compare
PGA1_c34880 +1.6 14.8 putative response regulator compare
PGA1_c33190 +1.6 11.0 putative anti-sigma-B factor antagonist compare
PGA1_c14960 +1.5 9.7 putative transcriptional regulator compare
PGA1_c34890 +1.1 8.9 putative histidine-containing phosphotransfer protein compare
PGA1_c19170 +1.0 6.7 sarcosine oxidase subunit beta compare
PGA1_c03880 +1.0 8.7 putative transcriptional activator protein RaiR compare
PGA1_c19160 +0.9 6.2 sarcosine oxidase 2 subunit delta compare
PGA1_c08890 +0.9 5.7 putative capsule polysaccharide export outer membrane protein compare
PGA1_c19150 +0.8 6.3 sarcosine oxidase subunit alpha compare
PGA1_c19140 +0.8 4.5 sarcosine oxidase-like protein compare
PGA1_c34510 +0.8 6.3 hypothetical protein compare
PGA1_c13640 +0.7 4.4 Phosphopantetheine attachment site. compare
PGA1_c24310 +0.7 4.7 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_c23750 +0.7 3.8 Uncharacterized conserved protein compare
PGA1_c29520 +0.7 6.4 beta-1,6-N-acetylglucosaminyltransferase-like protein compare
PGA1_c31740 +0.7 5.8 hypothetical protein compare
PGA1_c35930 +0.7 4.9 hypothetical protein compare
PGA1_c24320 +0.7 5.8 putative capsule polysaccharide export inner-membrane protein compare
PGA1_78p00120 +0.7 1.4 aldehyde dehydrogenase compare
PGA1_c23420 +0.7 6.2 Domain of unknown function. compare
PGA1_c34470 +0.7 4.0 UDP-glucose 4-epimerase ExoB compare
PGA1_78p00280 +0.7 3.0 putative sodium/alanine symporter compare
PGA1_c35940 +0.7 5.9 Core-2/I-Branching enzyme. compare
PGA1_262p01630 +0.7 1.5 hypothetical protein compare
PGA1_c07650 +0.6 5.5 hypothetical protein compare
PGA1_c11280 +0.6 5.1 Putative hemolysin compare
PGA1_c18490 +0.6 5.9 Predicted ATPase compare
PGA1_c18480 +0.6 5.9 hypothetical protein compare
PGA1_c07950 +0.6 1.4 hypothetical protein compare
PGA1_c29510 +0.6 5.2 Sulfotransferase family. compare
PGA1_c34460 +0.6 4.8 hypothetical protein compare
PGA1_c35950 +0.6 5.5 hypothetical protein compare
PGA1_262p01250 +0.6 1.6 transcriptional regulator, crp family compare
PGA1_262p00730 +0.6 2.6 putative signal transduction histidine kinase compare
PGA1_c08880 +0.6 5.0 capsule polysaccharide export protein KpsC compare
PGA1_c08900 +0.6 4.3 putative capsule polysaccharide export protein KpsS compare
PGA1_c04700 +0.6 4.6 hypothetical protein compare
PGA1_78p00210 +0.6 2.3 putative oxidoreductase compare
PGA1_c13480 +0.6 4.7 hypothetical protein compare
PGA1_c29670 +0.6 2.5 small heat shock protein IbpA compare
PGA1_c18560 +0.6 1.7 hypothetical protein compare
PGA1_262p01060 +0.6 2.1 Protein of unknown function (DUF995). compare
PGA1_c05420 +0.6 1.6 glucokinase (EC 2.7.1.2) (from data) compare
PGA1_65p00450 +0.6 2.4 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c16570 +0.6 5.4 hypothetical protein compare
PGA1_c11170 +0.6 2.1 segregation and condensation protein A compare
PGA1_c19090 +0.6 2.1 Protein required for attachment to host cells compare
PGA1_c13630 +0.6 4.8 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal. compare
PGA1_c24800 +0.6 1.3 putative bifunctional SAT/APS kinase compare
PGA1_262p00560 +0.5 2.9 uracil DNA glycosylase-like protein compare
PGA1_c13490 +0.5 4.6 putative cytochrome P450 compare
PGA1_c31730 +0.5 3.9 hypothetical protein compare
PGA1_65p00110 +0.5 2.4 putative amino-acid ABC transporter, periplasmic solute-binding protein compare
PGA1_262p00610 +0.5 1.0 metallophosphoesterase compare
PGA1_c17400 +0.5 3.1 Uncharacterized protein conserved in bacteria compare
PGA1_c05840 +0.5 2.1 Uncharacterized conserved small protein compare
PGA1_78p00140 +0.5 1.3 Sugar phosphate isomerases/epimerases compare
PGA1_c03330 +0.5 2.2 tetratricopeptide repeat-containing protein compare
PGA1_c13660 +0.5 4.2 hypothetical protein compare
PGA1_c20910 +0.5 2.5 PHA synthesis repressor protein PhaR compare
PGA1_c13650 +0.5 4.3 hypothetical protein compare
PGA1_c14630 +0.5 3.2 trimethylamine methyltransferase MttB compare
PGA1_78p00160 +0.5 2.0 putative sugar-binding periplasmic protein compare
PGA1_c15380 +0.5 1.2 Uncharacterized conserved protein compare
PGA1_c33550 +0.5 3.8 putative fatty acid desaturase compare
PGA1_262p00710 +0.5 1.1 serine/threonine-protein kinase RsbT-like protein compare
PGA1_262p02110 +0.5 2.1 putative chemotaxis protein CheW compare
PGA1_262p01710 +0.5 2.7 putative glutathione transport system permease protein compare
PGA1_c23430 +0.5 3.8 Domain of unknown function. compare
PGA1_c29740 +0.5 1.6 hypothetical protein compare
PGA1_c14070 +0.5 2.9 hypothetical protein compare
PGA1_c34150 +0.5 1.1 exodeoxyribonuclease VII, small subunit compare
PGA1_c27890 +0.5 2.4 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) compare
PGA1_c03365 +0.5 1.9 Uncharacterized small protein compare
PGA1_c21000 +0.5 2.8 Predicted integral membrane protein (DUF2282). compare
PGA1_c05530 +0.5 2.6 putative allantoin catabolism protein compare
PGA1_c17340 +0.5 3.4 acyl-CoA dehydrogenase AcdA compare
PGA1_c35260 +0.4 1.6 ATP-dependent protease HslV compare
PGA1_c13690 +0.4 3.7 3-oxoacyl-[acyl-carrier-protein] synthase III compare
PGA1_c36300 +0.4 2.4 HTH-type transcriptional regulator, GntR family compare
PGA1_c13710 +0.4 4.0 diaminopimelate decarboxylase-like protein compare
PGA1_c13790 +0.4 3.4 hypothetical protein compare
PGA1_c04960 +0.4 3.3 putative non-specific ribonucleoside hydrolase compare
PGA1_c23730 +0.4 1.6 hypothetical protein compare
PGA1_c18340 +0.4 1.6 putative baseplate assembly protein W compare
PGA1_262p02010 +0.4 1.2 Uncharacterized conserved protein compare
PGA1_c31780 +0.4 1.4 DNA polymerase I compare
PGA1_c24970 +0.4 2.5 putative hydrolase, HAD superfamily compare
PGA1_c23710 +0.4 2.1 putative protein HflK compare
PGA1_c20140 +0.4 2.4 putative arginine-tRNA-protein transferase compare
PGA1_c02440 +0.4 3.6 putative ATP-binding/permease fusion ABC transporter compare
PGA1_c10730 +0.4 1.4 ribose-5-phosphate isomerase B compare
PGA1_c04110 +0.4 3.1 putative fatty acid oxidation complex subunit alpha compare
PGA1_c21060 +0.4 1.7 cold shock protein CspA compare
PGA1_c13750 +0.4 2.2 phosphopantetheine binding protein compare
PGA1_c02430 +0.4 3.0 type I secretion membrane fusion protein, HlyD family compare
PGA1_c18850 +0.4 1.8 Antibiotic biosynthesis monooxygenase. compare
PGA1_262p00660 +0.4 1.3 Predicted periplasmic protein compare
PGA1_c31380 +0.4 1.7 hypothetical protein compare
PGA1_c32430 +0.4 2.8 hypothetical protein compare
PGA1_262p00250 +0.4 1.6 ferritin-like protein compare
PGA1_c36270 +0.4 1.7 hypothetical protein compare
PGA1_c31930 +0.4 3.3 putative transporter, MFS family compare
PGA1_c07490 +0.4 1.0 Putative sterol carrier protein compare
PGA1_c06020 +0.4 1.0 thioesterase domain-containing protein compare
PGA1_c12940 +0.4 2.4 adenylate kinase Adk compare
PGA1_c09290 +0.4 1.7 WGR domain. compare
PGA1_c15330 +0.4 1.5 hypothetical protein compare
PGA1_c05490 +0.4 1.6 ureidoglycolate hydrolase AllA compare
PGA1_c29000 +0.4 1.9 inner membrane lipoprotein compare
PGA1_c07710 +0.4 1.4 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c11500 +0.4 2.2 putative pyridoxal-phosphate-dependent aminotransferase compare
PGA1_c12390 +0.4 1.4 putative protein SoxS compare
PGA1_c13700 +0.4 2.1 hypothetical protein compare
PGA1_262p01280 +0.4 1.3 transcriptional regulator, TetR family compare
PGA1_c08780 +0.4 0.9 hypothetical protein compare
PGA1_c06110 +0.4 2.4 Flp pilus assembly protein, ATPase CpaF compare
PGA1_c17410 +0.4 2.6 MFS type transporter compare
PGA1_c13110 +0.4 1.6 putative nitrilotriacetate monooxygenase component B compare
PGA1_c13670 +0.4 2.6 hypothetical protein compare
PGA1_c22820 +0.4 1.4 lytic transglycosylase-like protein compare
PGA1_c03400 +0.4 3.0 acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) compare
PGA1_c20370 +0.4 1.1 tRNA-Asp compare
PGA1_262p01000 +0.4 1.8 dipeptide transport ATP-binding protein DppF compare
PGA1_c13510 +0.4 1.2 hypothetical protein compare
PGA1_c34770 +0.4 2.4 Uncharacterized protein conserved in bacteria compare
PGA1_c10050 +0.3 1.3 Lactoylglutathione lyase and related lyases compare
PGA1_c12640 +0.3 2.3 D-lactate transporter, ATP-binding component (from data) compare
PGA1_c31270 +0.3 3.2 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_c27810 +0.3 2.5 nicotinate-nucleotide pyrophosphorylase compare
PGA1_c12730 +0.3 1.1 TIGR01244 family protein compare
PGA1_c05750 +0.3 1.2 hypothetical protein compare
PGA1_c36110 +0.3 1.4 monofunctional biosynthetic peptidoglycan transglycosylase MtgA compare
PGA1_c25260 +0.3 1.7 PA14 domain. compare
PGA1_c02190 +0.3 2.4 signal transduction histidine kinase compare
PGA1_c01210 +0.3 1.8 Putative hemolysin compare
PGA1_c15590 +0.3 3.1 putative transcriptional activator protein compare
PGA1_c30040 +0.3 1.9 cytochrome oxidase maturation protein CcoS compare
PGA1_c02460 +0.3 2.9 hypothetical protein compare
PGA1_c09470 +0.3 2.1 putative ATP-binding protein compare
PGA1_c33890 +0.3 1.6 thioesterase-like protein compare
PGA1_c26030 +0.3 0.7 transcriptional regulator, MarR family compare
PGA1_c17020 +0.3 1.6 Protein of unknown function (DUF3154). compare
PGA1_c11400 +0.3 1.7 ferric uptake regulation protein Fur compare
PGA1_c17350 +0.3 2.1 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
PGA1_c34480 +0.3 1.1 UTP--glucose-1-phosphate uridylyltransferase CelA compare
PGA1_c13680 +0.3 2.0 Prolyl oligopeptidase family. compare
PGA1_c26400 +0.3 1.7 putative HTH-type transcriptional regulator compare
PGA1_c21640 +0.3 1.4 hypothetical protein compare
PGA1_c17260 +0.3 1.0 hypothetical protein compare
PGA1_c06140 +0.3 2.3 putative bacterial type II/III secretion system protein compare
PGA1_c31170 +0.3 1.4 phosphotyrosine protein phosphatase-like protein compare
PGA1_c04090 +0.3 2.3 beta-ketoadipyl-CoA thiolase PaaJ compare
PGA1_c09140 +0.3 1.8 dethiobiotin synthetase BioD compare
PGA1_c17810 +0.3 1.8 putative gene transfer agent protein compare
PGA1_c26820 +0.3 1.9 probable enoyl-CoA hydratase PaaG compare
PGA1_c10260 +0.3 2.2 putative pyridoxal-phosphate-dependent aminotransferase compare
PGA1_c04720 +0.3 2.1 outer membrane protein OmpA-domain containing protein compare
PGA1_c13720 +0.3 2.2 hypothetical protein compare
PGA1_c16920 +0.3 1.1 molybdenum cofactor biosynthesis protein C compare
PGA1_c34940 +0.3 1.3 Putative sterol carrier protein compare
PGA1_c12420 +0.3 1.8 cytochrome c SoxX compare
PGA1_c10830 +0.3 1.2 colicin V production protein-like protein compare
PGA1_c02550 +0.3 1.9 protocatechuate 3,4-dioxygenase alpha chain compare
PGA1_c20230 +0.3 1.8 hypothetical protein compare
PGA1_c02450 +0.3 2.3 putative outer membrane efflux protein compare
PGA1_c21260 +0.3 1.2 hypothetical protein compare
PGA1_c12120 +0.3 1.8 thioesterase domain-containing protein compare
PGA1_c36290 +0.3 2.2 putative phenylserine dehydratase compare
PGA1_c32000 +0.3 2.1 cytochrome c compare
PGA1_c19630 +0.3 2.3 oxidoreductase, molybdopterin binding compare
PGA1_c16360 +0.3 1.3 putative transriptional regulator, AsnC family compare
PGA1_262p01020 +0.3 1.6 dipeptide transport system permease protein DppC compare
PGA1_c25990 +0.3 1.1 hypothetical protein compare
PGA1_c02020 +0.3 1.4 Predicted metal-binding protein compare
PGA1_c17660 +0.3 1.1 hypothetical protein compare
PGA1_c09990 +0.3 1.3 Uncharacterized protein conserved in bacteria compare
PGA1_c33055 +0.3 1.6 hypothetical protein compare
PGA1_c06370 +0.3 1.1 adenine phosphoribosyltransferase Apt compare
PGA1_c36440 +0.3 1.4 Domain of unknown function (DU1801). compare
PGA1_c34380 +0.3 2.1 putative spermidine/putrescine transport system extracellular solute-binding protein compare
PGA1_262p00990 +0.3 1.5 transcriptional regulator, LysR family compare
PGA1_c10080 +0.3 2.0 Uncharacterized membrane-anchored protein conserved in bacteria compare
PGA1_262p00950 +0.3 0.7 thioesterase superfamily protein TdaD compare
PGA1_c25040 +0.3 1.7 alpha/beta hydrolase domain-containing protein compare
PGA1_c18660 +0.3 1.1 hypothetical protein compare
PGA1_c13860 +0.3 1.6 transcriptional regulator, GntR family compare
PGA1_c26765 +0.3 1.7 peptidase S54-like protein compare
PGA1_c35240 +0.3 2.1 ATP-dependent hsl protease ATP-binding subunit HslU compare
PGA1_c29370 +0.3 1.0 putative toluene tolerance protein, Ttg2 family compare
PGA1_c03530 +0.3 1.3 pyridoxamine 5'-phosphate oxidase-like protein compare
PGA1_c24160 +0.3 1.0 hypothetical protein compare
PGA1_c14530 +0.3 0.6 transcriptional regulator, TetR family compare
PGA1_c08810 +0.3 1.3 hypothetical protein compare
PGA1_c12360 +0.3 1.8 Uncharacterized conserved protein compare
PGA1_c04940 +0.3 1.5 Lipid A 3-O-deacylase (PagL). compare
PGA1_c34700 +0.3 1.7 putative carbon-nitrogen hydrolase compare
PGA1_c22860 +0.3 1.1 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Serine in Phaeobacter inhibens DSM 17395

For carbon source L-Serine across organisms