Experiment set7IT071 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM Gly-D-Asp

200 most important genes:

  gene name fitness t score description  
MMP_RS01020 -5.7 -1.2 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS03315 -5.3 -1.8 ferrous iron transport protein A compare
MMP_RS08720 -5.1 -2.0 4Fe-4S binding protein compare
MMP_RS06400 -5.0 -2.2 4Fe-4S binding protein compare
MMP_RS07845 -4.6 -2.4 LL-diaminopimelate aminotransferase compare
MMP_RS02145 -4.6 -12.5 winged helix-turn-helix transcriptional regulator compare
MMP_RS08165 -4.4 -3.6 phosphoglycerate dehydrogenase compare
MMP_RS04445 -4.4 -13.9 P-II family nitrogen regulator compare
MMP_RS08715 -4.4 -2.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02010 -4.3 -14.7 PHP domain-containing protein compare
MMP_RS05250 -4.3 -2.3 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01385 -4.1 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07390 -4.1 -3.7 cell division protein FtsZ compare
MMP_RS08210 -4.1 -3.3 phosphatidylglycerophosphatase A compare
MMP_RS02675 -4.1 -3.8 hypothetical protein compare
MMP_RS04440 -4.0 -17.3 nitrogenase iron protein compare
MMP_RS03035 -4.0 -6.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08440 -4.0 -3.6 cell division protein SepF compare
MMP_RS02240 -4.0 -4.8 methanogenesis marker 7 protein compare
MMP_RS04450 -3.9 -21.6 P-II family nitrogen regulator compare
MMP_RS01175 -3.8 -6.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04460 -3.8 -26.0 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS04455 -3.8 -25.8 nitrogenase subunit alpha compare
MMP_RS02900 -3.8 -0.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS02685 -3.8 -19.3 molybdate ABC transporter substrate-binding protein compare
MMP_RS03445 -3.8 -1.3 methanogenesis marker 17 protein compare
MMP_RS04465 -3.8 -21.0 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS08435 -3.7 -3.7 Era-like GTP-binding protein compare
MMP_RS06475 -3.7 -7.2 FAD-dependent oxidoreductase compare
MMP_RS07075 -3.6 -6.3 phosphomannomutase/phosphoglucomutase compare
MMP_RS01500 -3.6 -2.5 CBS domain-containing protein compare
MMP_RS04470 -3.6 -21.6 nitrogenase compare
MMP_RS02680 -3.6 -8.3 ABC transporter permease compare
MMP_RS03960 -3.6 -1.4 hypothetical protein compare
MMP_RS00555 -3.6 -11.7 MFS transporter compare
MMP_RS04790 -3.6 -14.5 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01900 -3.6 -19.6 hypothetical protein compare
MMP_RS07435 -3.5 -2.8 GMP synthase subunit A compare
MMP_RS01795 -3.4 -1.8 methanogenesis marker 6 protein compare
MMP_RS05500 -3.4 -13.4 2-isopropylmalate synthase compare
MMP_RS06625 -3.4 -2.7 DNA primase compare
MMP_RS07185 -3.4 -15.7 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01880 -3.3 -10.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS05930 -3.3 -2.8 3-isopropylmalate dehydratase large subunit compare
MMP_RS06725 -3.3 -16.8 hypothetical protein compare
MMP_RS01980 -3.3 -16.9 trimeric intracellular cation channel family protein compare
MMP_RS07525 -3.3 -10.1 4Fe-4S binding protein compare
MMP_RS06375 -3.3 -8.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS02670 -3.3 -18.3 ATP-binding cassette domain-containing protein compare
MMP_RS00040 -3.3 -7.5 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS08300 -3.2 -1.5 metal-sulfur cluster assembly factor compare
MMP_RS07365 -3.2 -13.6 2-phosphoglycerate kinase compare
MMP_RS04685 -3.2 -4.3 DUF126 domain-containing protein compare
MMP_RS01455 -3.2 -10.9 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06285 -3.2 -4.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS02245 -3.2 -5.0 hypothetical protein compare
MMP_RS07735 -3.2 -1.2 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01925 -3.1 -10.2 DUF1616 domain-containing protein compare
MMP_RS02730 -3.1 -13.4 ModD protein compare
MMP_RS07730 -3.1 -2.4 pyruvate synthase subunit beta compare
MMP_RS01380 -3.1 -7.0 PHP domain-containing protein compare
MMP_RS08790 -3.1 -3.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS04710 -3.1 -2.3 hypothetical protein compare
MMP_RS06270 -3.1 -6.0 TIGR00300 family protein compare
MMP_RS07635 -3.0 -9.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01610 -3.0 -5.0 hypothetical protein compare
MMP_RS05640 -3.0 -8.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS02195 -3.0 -5.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS04215 -3.0 -11.2 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01325 -3.0 -2.7 dihydroneopterin aldolase family protein compare
MMP_RS03700 -3.0 -11.9 sodium:proton antiporter compare
MMP_RS01975 -3.0 -20.5 hypothetical protein compare
MMP_RS00915 -3.0 -8.7 DUF116 domain-containing protein compare
MMP_RS03110 -2.9 -7.5 glycosyltransferase family 2 protein compare
MMP_RS01830 -2.9 -1.8 tRNA-Val compare
MMP_RS00900 -2.9 -2.7 50S ribosomal protein L39e compare
MMP_RS06120 -2.9 -2.7 UPF0147 family protein compare
MMP_RS05265 -2.9 -3.1 2-isopropylmalate synthase compare
MMP_RS04090 -2.9 -4.4 hypothetical protein compare
MMP_RS08195 -2.9 -13.0 hypothetical protein compare
MMP_RS01755 -2.9 -1.7 DUF2097 domain-containing protein compare
MMP_RS00310 -2.9 -11.3 CBS domain-containing protein compare
MMP_RS06670 -2.9 -7.5 glucose-6-phosphate isomerase compare
MMP_RS08645 -2.8 -9.8 UPF0179 family protein compare
MMP_RS01545 -2.8 -1.4 CBS domain-containing protein compare
MMP_RS03435 -2.8 -1.9 ketol-acid reductoisomerase compare
MMP_RS01875 -2.8 -12.2 N-acetyltransferase compare
MMP_RS01005 -2.8 -1.8 riboflavin synthase compare
MMP_RS07605 -2.7 -4.6 diadenylate cyclase compare
MMP_RS00300 -2.7 -0.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS06940 -2.7 -3.3 polyprenyl diphosphate synthase compare
MMP_RS01905 -2.7 -15.8 glycosyltransferase compare
MMP_RS02355 -2.7 -4.1 30S ribosomal protein S27ae compare
MMP_RS06315 -2.7 -1.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06230 -2.7 -3.4 helix-turn-helix domain-containing protein compare
MMP_RS01885 -2.6 -10.4 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07355 -2.6 -1.2 transcription factor S compare
MMP_RS08500 -2.6 -6.8 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS06730 -2.6 -2.6 phosphopantothenate/pantothenate synthetase compare
MMP_RS08860 -2.6 -7.1 MinD/ParA family protein compare
MMP_RS07200 -2.6 -9.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01970 -2.5 -16.0 TIGR04279 domain-containing protein compare
MMP_RS04585 -2.5 -11.2 AIR synthase related protein compare
MMP_RS00685 -2.5 -4.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS08635 -2.5 -2.6 UbiA family prenyltransferase compare
MMP_RS07445 -2.4 -7.3 helix-turn-helix domain-containing protein compare
MMP_RS03475 -2.4 -1.0 hypothetical protein compare
MMP_RS01225 -2.4 -6.4 DUF5379 domain-containing protein compare
MMP_RS05430 -2.4 -5.9 TIGR00288 family NYN domain-containing protein compare
MMP_RS01890 -2.4 -7.0 nucleotide sugar dehydrogenase compare
MMP_RS00810 -2.4 -10.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01265 -2.4 -2.7 hypothetical protein compare
MMP_RS01955 -2.4 -3.3 hypothetical protein compare
MMP_RS01700 -2.4 -0.9 dihydroxy-acid dehydratase compare
MMP_RS08350 -2.4 -1.2 hypothetical protein compare
MMP_RS09020 -2.3 -2.3 hypothetical protein compare
MMP_RS08155 -2.3 -8.7 hypothetical protein compare
MMP_RS08650 -2.3 -3.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01910 -2.3 -11.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS01915 -2.3 -13.9 DUF354 domain-containing protein compare
MMP_RS01220 -2.3 -10.3 hypothetical protein compare
MMP_RS03025 -2.2 -6.2 molybdenum cofactor guanylyltransferase compare
MMP_RS00985 -2.2 -6.9 CDC48 family AAA ATPase compare
MMP_RS01960 -2.2 -1.3 hypothetical protein compare
MMP_RS00695 -2.2 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07600 -2.2 -3.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01800 -2.2 -4.6 TIGR00303 family protein compare
MMP_RS06295 -2.1 -8.3 methanogenesis marker 14 protein compare
MMP_RS05925 -2.1 -4.1 small nuclear ribonucleoprotein compare
MMP_RS04780 -2.1 -4.2 ribonuclease P compare
MMP_RS00305 -2.1 -2.3 phosphoribosyl-ATP diphosphatase compare
MMP_RS07710 -2.1 -7.0 cell division protein FtsZ compare
MMP_RS05550 -2.1 -0.9 cation:proton antiporter compare
MMP_RS05460 -2.0 -10.3 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS06885 -2.0 -3.3 50S ribosome-binding GTPase compare
MMP_RS00895 -2.0 -4.3 hypothetical protein compare
MMP_RS02800 -2.0 -8.6 nucleotidyltransferase domain-containing protein compare
MMP_RS02135 -2.0 -6.4 DUF5612 domain-containing protein compare
MMP_RS06020 -2.0 -5.7 archaeoflavoprotein AfpA compare
MMP_RS04720 -2.0 -3.0 DedA family protein compare
MMP_RS07535 -2.0 -8.8 4Fe-4S binding protein compare
MMP_RS07695 -2.0 -8.2 DUF3236 domain-containing protein compare
MMP_RS07725 -2.0 -4.4 4Fe-4S dicluster domain-containing protein compare
MMP_RS07545 -1.9 -1.3 HTH domain-containing protein compare
MMP_RS06925 -1.9 -2.7 ribonuclease VapC4 compare
MMP_RS07090 -1.9 -8.4 tRNA (adenine-N1)-methyltransferase compare
MMP_RS03205 -1.9 -1.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS06395 -1.9 -4.3 ThiF family adenylyltransferase compare
MMP_RS01920 -1.9 -12.9 glycosyltransferase family 2 protein compare
MMP_RS06855 -1.9 -9.7 hypothetical protein compare
MMP_RS05540 -1.9 -3.4 hypothetical protein compare
MMP_RS04850 -1.9 -13.7 UPF0254 family protein compare
MMP_RS02340 -1.9 -2.5 DNA-directed RNA polymerase subunit E'' compare
MMP_RS03400 -1.9 -2.3 archease compare
MMP_RS01725 -1.9 -3.9 class I SAM-dependent methyltransferase family protein compare
MMP_RS00455 -1.9 -7.3 orotate phosphoribosyltransferase-like protein compare
MMP_RS00725 -1.8 -7.0 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS00515 -1.8 -1.0 DUF655 domain-containing protein compare
MMP_RS02345 -1.8 -3.9 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS00115 -1.8 -10.6 radical SAM protein compare
MMP_RS07575 -1.8 -3.1 RNA ligase partner protein compare
MMP_RS08330 -1.8 -6.1 NADH-quinone oxidoreductase subunit H compare
MMP_RS06105 -1.8 -9.4 hydrogenase maturation peptidase HycI compare
MMP_RS05425 -1.8 -5.4 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS00730 -1.7 -5.5 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS07380 -1.7 -2.3 transcription elongation factor Spt5 compare
MMP_RS05280 -1.7 -6.5 COG1361 S-layer family protein compare
MMP_RS00735 -1.7 -3.9 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS05535 -1.7 -4.7 hypothetical protein compare
MMP_RS03600 -1.7 -2.6 triose-phosphate isomerase compare
MMP_RS05765 -1.7 -4.6 M42 family metallopeptidase compare
MMP_RS05555 -1.7 -1.5 DUF4040 domain-containing protein compare
MMP_RS06895 -1.7 -1.8 selenocysteine-specific translation elongation factor compare
MMP_RS05845 -1.7 -2.2 tRNA-intron lyase compare
MMP_RS07875 -1.6 -5.2 hypothetical protein compare
MMP_RS00750 -1.6 -2.1 fumarate hydratase compare
MMP_RS03580 -1.6 -3.3 signal recognition particle-docking protein FtsY compare
MMP_RS08370 -1.6 -0.7 cation:proton antiporter subunit C compare
MMP_RS02780 -1.6 -6.9 hypothetical protein compare
MMP_RS05875 -1.6 -3.1 hydroxyethylthiazole kinase compare
MMP_RS06485 -1.6 -1.2 zinc ribbon domain-containing protein compare
MMP_RS08570 -1.6 -7.3 coenzyme F420-0:L-glutamate ligase compare
MMP_RS07700 -1.6 -7.4 DUF1188 domain-containing protein compare
MMP_RS04900 -1.6 -12.2 hypothetical protein compare
MMP_RS07420 -1.6 -4.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01895 -1.6 -9.8 flippase compare
MMP_RS08725 -1.6 -2.2 Ni/Fe hydrogenase subunit alpha compare
MMP_RS00110 -1.6 -3.2 hypothetical protein compare
MMP_RS00720 -1.5 -6.1 metal-dependent hydrolase compare
MMP_RS04605 -1.5 -2.7 cobalt ECF transporter T component CbiQ compare
MMP_RS04890 -1.5 -0.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS05440 -1.5 -7.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS08820 -1.5 -5.4 hypothetical protein compare
MMP_RS02110 -1.5 -2.3 hypothetical protein compare
MMP_RS06975 -1.5 -1.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03485 -1.4 -4.3 TIGR00267 family protein compare
MMP_RS04875 -1.4 -4.6 energy-converting hydrogenase B subunit P compare
MMP_RS04870 -1.4 -4.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS07820 -1.4 -3.1 UPF0104 family protein compare
MMP_RS07755 -1.4 -1.4 DUF555 domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Gly-DL-Asp in Methanococcus maripaludis S2

For nitrogen source Gly-DL-Asp across organisms