Experiment set7IT071 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM Gly-D-Asp

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS00130 +5.1 8.8 nickel-responsive transcriptional regulator NikR compare
MMP_RS08320 +4.4 14.2 molybdopterin molybdotransferase MoeA compare
MMP_RS02885 +3.8 16.9 molybdopterin biosynthesis protein compare
MMP_RS06715 +2.7 16.3 cache domain-containing protein compare
MMP_RS06720 +2.7 9.8 response regulator transcription factor compare
MMP_RS01145 +2.0 8.6 ABC transporter ATP-binding protein compare
MMP_RS03390 +1.9 6.8 malate dehydrogenase compare
MMP_RS01135 +1.9 12.5 molybdate ABC transporter substrate-binding protein compare
MMP_RS01140 +1.7 5.5 molybdate ABC transporter permease subunit compare
MMP_RS04885 +1.7 12.5 sulfite exporter TauE/SafE family protein compare
MMP_RS09025 +1.5 1.8 hypothetical protein compare
MMP_RS00375 +1.4 7.4 ammonium transporter compare
MMP_RS03300 +1.4 1.3 TOBE domain-containing protein compare
MMP_RS08275 +1.3 6.6 hypothetical protein compare
MMP_RS03340 +1.2 1.0 ABC transporter ATP-binding protein compare
MMP_RS01055 +1.1 4.2 hypothetical protein compare
MMP_RS00325 +1.1 2.2 RNA-binding protein compare
MMP_RS08665 +1.1 6.8 hypothetical protein compare
MMP_RS01280 +1.0 6.8 DUF515 domain-containing protein compare
MMP_RS06325 +1.0 1.6 hypothetical protein compare
MMP_RS07960 +1.0 4.7 sugar phosphate isomerase/epimerase compare
MMP_RS04145 +1.0 1.8 hypothetical protein compare
MMP_RS00395 +1.0 1.6 MGMT family protein compare
MMP_RS06770 +1.0 5.8 DHH family phosphoesterase compare
MMP_RS00185 +1.0 6.9 potassium channel protein compare
MMP_RS02290 +0.9 3.1 MBL fold metallo-hydrolase compare
MMP_RS04475 +0.9 3.0 nitrogen fixation compare
MMP_RS07765 +0.9 4.9 sodium:alanine symporter family protein compare
MMP_RS00855 +0.9 2.9 DUF367 family protein compare
MMP_RS08930 +0.8 0.7 hypothetical protein compare
MMP_RS06150 +0.8 4.0 hypothetical protein compare
MMP_RS00655 +0.8 2.3 hypothetical protein compare
MMP_RS07890 +0.8 1.7 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS01310 +0.8 5.7 hypothetical protein compare
MMP_RS07915 +0.8 3.4 DUF4870 domain-containing protein compare
MMP_RS06500 +0.8 5.9 ATP-binding protein compare
MMP_RS05970 +0.8 2.5 class II SORL domain-containing protein compare
MMP_RS00990 +0.8 3.5 hypothetical protein compare
MMP_RS06760 +0.8 2.6 hypothetical protein compare
MMP_RS01290 +0.8 4.4 class III signal peptide-containing protein compare
MMP_RS03965 +0.7 1.8 hypothetical protein compare
MMP_RS00660 +0.7 4.5 alkaline phosphatase family protein compare
MMP_RS01785 +0.7 4.1 hypothetical protein compare
MMP_RS02915 +0.7 3.5 amino acid ABC transporter permease compare
MMP_RS03305 +0.7 3.2 winged helix-turn-helix domain-containing protein compare
MMP_RS06345 +0.7 3.8 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01550 +0.7 3.6 DUF1624 domain-containing protein compare
MMP_RS08410 +0.7 3.5 DUF169 domain-containing protein compare
MMP_RS01270 +0.7 4.2 prepilin peptidase compare
MMP_RS01495 +0.7 3.3 TraB/GumN family protein compare
MMP_RS00055 +0.7 4.7 DUF2254 domain-containing protein compare
MMP_RS06650 +0.7 3.0 glycoside hydrolase family 57 protein compare
MMP_RS00245 +0.7 5.1 type II secretion system F family protein compare
MMP_RS00155 +0.7 2.5 heavy metal-binding domain-containing protein compare
MMP_RS00240 +0.7 4.9 type II secretion system F family protein compare
MMP_RS01305 +0.7 4.9 hypothetical protein compare
MMP_RS07125 +0.7 2.1 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00250 +0.7 4.7 Flp pilus assembly complex ATPase component TadA compare
MMP_RS08455 +0.6 1.7 multiprotein bridging factor aMBF1 compare
MMP_RS05365 +0.6 1.5 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS03220 +0.6 1.4 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS07805 +0.6 3.4 ABC transporter permease compare
MMP_RS08555 +0.6 1.4 hypothetical protein compare
MMP_RS00290 +0.6 2.4 hypothetical protein compare
MMP_RS08070 +0.6 2.4 DUF2096 domain-containing protein compare
MMP_RS08285 +0.6 3.5 serine/threonine protein kinase compare
MMP_RS08640 +0.6 4.0 TIM barrel protein compare
MMP_RS05035 +0.6 2.3 hypothetical protein compare
MMP_RS06335 +0.6 2.3 HAD family hydrolase compare
MMP_RS06685 +0.6 3.5 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07815 +0.6 0.7 DUF2120 domain-containing protein compare
MMP_RS03150 +0.6 3.5 phosphoglycerate mutase compare
MMP_RS06570 +0.5 1.7 DUF190 domain-containing protein compare
MMP_RS08760 +0.5 1.1 hypothetical protein compare
MMP_RS07840 +0.5 1.6 ribonuclease III compare
MMP_RS01635 +0.5 2.7 thiamine pyrophosphate-dependent enzyme compare
MMP_RS08430 +0.5 2.8 HAD family hydrolase compare
MMP_RS05315 +0.5 0.7 hypothetical protein compare
MMP_RS02045 +0.5 0.9 tRNA-Met compare
MMP_RS07895 +0.5 1.4 cytochrome c compare
MMP_RS06440 +0.5 2.4 CBS domain-containing protein compare
MMP_RS06705 +0.5 2.3 formate/nitrite transporter family protein compare
MMP_RS00570 +0.5 1.5 protein-L-isoaspartate O-methyltransferase compare
MMP_RS05695 +0.5 2.9 phospholipase D-like domain-containing protein compare
MMP_RS06680 +0.5 2.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS05800 +0.5 2.5 B12-binding domain-containing radical SAM protein compare
MMP_RS05820 +0.5 3.0 RNA-binding transcriptional accessory protein compare
MMP_RS06745 +0.5 1.2 DUF2119 domain-containing protein compare
MMP_RS01120 +0.5 2.4 permease compare
MMP_RS08475 +0.5 2.7 ABC transporter permease compare
MMP_RS02745 +0.5 1.2 hypothetical protein compare
MMP_RS03065 +0.5 1.4 AzlC family ABC transporter permease compare
MMP_RS00975 +0.5 2.8 HD domain-containing protein compare
MMP_RS01525 +0.5 0.9 nucleoside-diphosphate kinase compare
MMP_RS00450 +0.5 0.8 4Fe-4S binding protein compare
MMP_RS02965 +0.5 2.3 carboxymuconolactone decarboxylase family protein compare
MMP_RS04100 +0.5 1.0 hypothetical protein compare
MMP_RS06145 +0.5 3.8 hypothetical protein compare
MMP_RS05785 +0.4 3.0 ATP-binding protein compare
MMP_RS06870 +0.4 1.6 DedA family protein compare
MMP_RS01285 +0.4 2.5 hypothetical protein compare
MMP_RS01660 +0.4 1.4 hypothetical protein compare
MMP_RS07800 +0.4 1.9 ATP-binding cassette domain-containing protein compare
MMP_RS00950 +0.4 1.3 site-2 protease family protein compare
MMP_RS06910 +0.4 2.3 RlmF-related methyltransferase compare
MMP_RS01295 +0.4 2.4 hypothetical protein compare
MMP_RS08405 +0.4 2.2 MFS transporter compare
MMP_RS02770 +0.4 1.6 hypothetical protein compare
MMP_RS07770 +0.4 1.7 alanine racemase compare
MMP_RS04615 +0.4 0.6 PDGLE domain-containing protein compare
MMP_RS09045 +0.4 2.5 class III signal peptide-containing protein compare
MMP_RS01630 +0.4 2.4 N-glycosylase/DNA lyase compare
MMP_RS07650 +0.4 2.5 TldD/PmbA family protein compare
MMP_RS05720 +0.4 1.3 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS06990 +0.4 1.4 CatB-related O-acetyltransferase compare
MMP_RS08075 +0.4 1.6 DUF749 domain-containing protein compare
MMP_RS02605 +0.4 0.4 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS00335 +0.4 1.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS04325 +0.4 1.8 MtaA/CmuA family methyltransferase compare
MMP_RS05715 +0.4 1.7 hypothetical protein compare
MMP_RS01870 +0.4 2.0 acyl-CoA dehydratase activase compare
MMP_RS00665 +0.4 1.7 hypothetical protein compare
MMP_RS01275 +0.4 1.6 class III signal peptide-containing protein compare
MMP_RS01465 +0.4 0.8 hypothetical protein compare
MMP_RS08325 +0.4 2.3 hypothetical protein compare
MMP_RS01640 +0.4 1.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMP_RS08235 +0.4 1.0 hypothetical protein compare
MMP_RS06365 +0.4 0.8 hypothetical protein compare
MMP_RS04620 +0.4 0.8 cobalt transporter CbiM compare
MMP_RS09055 +0.4 0.4 CAP domain-containing protein compare
MMP_RS00940 +0.4 1.5 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS07790 +0.4 2.0 segregation/condensation protein A compare
MMP_RS05795 +0.3 0.8 redox-regulated ATPase YchF compare
MMP_RS05635 +0.3 1.6 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS08085 +0.3 2.3 hypothetical protein compare
MMP_RS02705 +0.3 1.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01130 +0.3 1.6 flavoprotein compare
MMP_RS07645 +0.3 1.7 aldehyde dehydrogenase family protein compare
MMP_RS08250 +0.3 1.7 pyruvate kinase compare
MMP_RS00345 +0.3 0.9 DUF2666 domain-containing protein compare
MMP_RS02375 +0.3 2.1 hypothetical protein compare
MMP_RS06590 +0.3 0.8 GNAT family N-acetyltransferase compare
MMP_RS08750 +0.3 1.2 hypothetical protein compare
MMP_RS08770 +0.3 1.8 hypothetical protein compare
MMP_RS01090 +0.3 1.8 ABC transporter substrate-binding protein compare
MMP_RS06660 +0.3 1.6 glycosyltransferase family 4 protein compare
MMP_RS05095 +0.3 1.2 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS05090 +0.3 1.6 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS01460 +0.3 1.0 hypothetical protein compare
MMP_RS08485 +0.3 1.3 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS05965 +0.3 1.0 carboxymuconolactone decarboxylase family protein compare
MMP_RS00195 +0.3 2.6 DUF4013 domain-containing protein compare
MMP_RS02305 +0.3 2.1 DUF378 domain-containing protein compare
MMP_RS05985 +0.3 1.1 hypothetical protein compare
MMP_RS03320 +0.3 0.8 metal-dependent transcriptional regulator compare
MMP_RS06050 +0.3 1.5 ZIP family metal transporter compare
MMP_RS07720 +0.3 1.8 4Fe-4S binding protein compare
MMP_RS06535 +0.3 0.9 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS04035 +0.3 0.9 hypothetical protein compare
MMP_RS00125 +0.3 0.4 DUF2798 domain-containing protein compare
MMP_RS06035 +0.3 1.5 glycosyltransferase family 2 protein compare
MMP_RS08130 +0.3 1.4 IGHMBP2 family helicase compare
MMP_RS07570 +0.3 1.4 nucleotidyltransferase family protein compare
MMP_RS00650 +0.3 1.5 ABC transporter ATP-binding protein compare
MMP_RS08600 +0.3 0.6 flagellar protein D compare
MMP_RS08160 +0.3 1.0 EamA family transporter compare
MMP_RS06540 +0.3 0.6 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS06860 +0.3 0.5 4Fe-4S binding protein compare
MMP_RS06200 +0.3 1.6 M24 family metallopeptidase compare
MMP_RS02170 +0.3 0.9 CBS domain-containing protein compare
MMP_RS04735 +0.3 1.7 tautomerase family protein compare
MMP_RS06250 +0.3 1.2 hypothetical protein compare
MMP_RS06655 +0.3 1.7 glycoside hydrolase family 15 protein compare
MMP_RS04060 +0.3 1.2 hypothetical protein compare
MMP_RS08310 +0.3 0.5 TMEM165/GDT1 family protein compare
MMP_RS00385 +0.3 1.8 P-II family nitrogen regulator compare
MMP_RS08775 +0.3 1.3 methanogenesis marker 9 domain-containing protein compare
MMP_RS03675 +0.3 1.7 RimK family alpha-L-glutamate ligase compare
MMP_RS03000 +0.3 1.9 cupin domain-containing protein compare
MMP_RS01865 +0.3 0.4 GPR1/FUN34/YaaH family transporter compare
MMP_RS01105 +0.3 1.2 hypothetical protein compare
MMP_RS01645 +0.3 0.7 SWIM zinc finger family protein compare
MMP_RS02390 +0.3 1.2 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS08850 +0.3 2.2 hypothetical protein compare
MMP_RS05960 +0.3 1.3 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS00430 +0.3 0.9 hypothetical protein compare
MMP_RS06225 +0.3 1.1 DNA double-strand break repair nuclease NurA compare
MMP_RS04610 +0.3 0.7 Dabb family protein compare
MMP_RS00295 +0.3 0.4 gamma carbonic anhydrase family protein compare
MMP_RS07620 +0.3 1.2 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS06190 +0.3 1.6 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS04530 +0.3 1.1 ABC transporter permease compare
MMP_RS00390 +0.3 1.2 ammonium transporter compare
MMP_RS01365 +0.3 0.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS02735 +0.2 1.2 MBL fold metallo-hydrolase compare
MMP_RS01490 +0.2 1.2 tetratricopeptide repeat protein compare
MMP_RS07850 +0.2 0.6 prephenate dehydratase compare
MMP_RS07615 +0.2 1.3 energy-coupling factor ABC transporter permease compare
MMP_RS06575 +0.2 0.8 fluoride efflux transporter CrcB compare
MMP_RS01850 +0.2 1.3 phosphate ABC transporter substrate-binding protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Gly-DL-Asp in Methanococcus maripaludis S2

For nitrogen source Gly-DL-Asp across organisms