Experiment set7IT070 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
Xcc-8004.998.1 -3.7 -2.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.623.1 -3.2 -2.2 Phosphoserine phosphatase compare
Xcc-8004.3041.1 -2.9 -3.6 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.2922.1 -2.8 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.574.1 -2.7 -7.9 Di-/tripeptide transporter compare
Xcc-8004.4241.1 -2.6 -2.8 cytidine and deoxycytidylate deaminase family protein compare
Xcc-8004.1660.1 -2.6 -1.2 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.1137.1 -2.5 -1.6 FIG006231: RNA-binding protein compare
Xcc-8004.2182.1 -2.5 -12.9 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.3395.1 -2.5 -3.0 Transcriptional regulator, GntR family compare
Xcc-8004.3979.1 -2.4 -8.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2334.1 -2.4 -6.5 Transport ATP-binding protein CydD compare
Xcc-8004.1372.1 -2.4 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1727.1 -2.3 -2.5 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1241.1 -2.2 -3.7 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3492.1 -2.2 -1.4 FIG01211425: hypothetical protein compare
Xcc-8004.1027.1 -2.2 -1.8 Two-component system sensor protein compare
Xcc-8004.2923.1 -2.2 -8.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.3976.1 -2.2 -3.2 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2879.1 -2.1 -1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.3715.1 -2.1 -2.0 FIG01212258: hypothetical protein compare
Xcc-8004.2921.1 -2.1 -3.2 ferrous iron transport protein compare
Xcc-8004.4039.1 -2.1 -2.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1007.1 -2.1 -1.4 acetylxylan esterase compare
Xcc-8004.4697.1 -2.1 -3.3 FIG01210654: hypothetical protein compare
Xcc-8004.3726.1 -2.0 -1.9 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.1959.1 -2.0 -1.4 hypothetical protein compare
Xcc-8004.4596.1 -2.0 -7.5 hypothetical protein compare
Xcc-8004.3442.1 -1.9 -2.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.957.1 -1.9 -2.4 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1961.1 -1.9 -1.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.4620.1 -1.9 -5.4 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.970.1 -1.9 -3.5 Probable cytochrome c2 compare
Xcc-8004.3590.1 -1.8 -1.4 FIG01211013: hypothetical protein compare
Xcc-8004.1436.1 -1.8 -1.9 Holliday junction DNA helicase RuvA compare
Xcc-8004.2215.1 -1.8 -1.2 hypothetical protein compare
Xcc-8004.3304.1 -1.8 -1.1 FIG01211108: hypothetical protein compare
Xcc-8004.5239.1 -1.8 -3.5 Hexuronate transporter compare
Xcc-8004.778.1 -1.7 -2.9 FIG01214273: hypothetical protein compare
Xcc-8004.1359.1 -1.7 -5.2 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3394.1 -1.7 -2.3 hypothetical protein compare
Xcc-8004.4046.1 -1.7 -8.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3703.1 -1.7 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3479.1 -1.6 -1.6 aklaviketone reductase compare
Xcc-8004.3731.1 -1.6 -1.5 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.2335.1 -1.6 -3.4 Transport ATP-binding protein CydC compare
Xcc-8004.4844.1 -1.6 -0.9 FIG01210764: hypothetical protein compare
Xcc-8004.3815.1 -1.6 -2.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.4810.1 -1.6 -6.7 hypothetical protein compare
Xcc-8004.3040.1 -1.6 -3.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.1651.1 -1.6 -6.3 putative Cytochrome bd2, subunit I compare
Xcc-8004.5363.1 -1.5 -2.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.3320.1 -1.5 -1.4 FIG01209869: hypothetical protein compare
Xcc-8004.4000.1 -1.5 -2.4 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.645.1 -1.5 -1.4 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.1236.1 -1.5 -3.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.319.1 -1.5 -7.1 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.459.1 -1.5 -2.4 4-hydroxybenzoate transporter compare
Xcc-8004.2228.1 -1.5 -3.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.3855.1 -1.4 -5.1 FIG01209965: hypothetical protein compare
Xcc-8004.1696.1 -1.4 -1.4 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1086.1 -1.4 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1380.1 -1.4 -1.4 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.3451.1 -1.4 -1.6 hypothetical protein compare
Xcc-8004.410.1 -1.3 -1.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1615.1 -1.3 -1.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.3710.1 -1.3 -1.5 hypothetical protein compare
Xcc-8004.3754.1 -1.3 -2.1 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.1243.1 -1.3 -4.4 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.1904.1 -1.3 -1.9 two-component system regulatory protein compare
Xcc-8004.318.1 -1.3 -4.0 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.2357.1 -1.3 -3.1 Segregation and condensation protein B compare
Xcc-8004.2199.1 -1.3 -1.8 Hemerythrin-like protein PA1673 compare
Xcc-8004.1249.1 -1.3 -3.4 Transcriptional regulator compare
Xcc-8004.3783.1 -1.3 -4.7 Two-component system sensor protein compare
Xcc-8004.1567.1 -1.3 -3.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.1790.1 -1.2 -1.9 Zinc uptake regulation protein ZUR compare
Xcc-8004.2230.1 -1.2 -3.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.951.1 -1.2 -1.4 General secretion pathway protein M compare
Xcc-8004.2266.1 -1.2 -1.4 FIG01211351: hypothetical protein compare
Xcc-8004.1955.1 -1.2 -3.9 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.3346.1 -1.2 -2.2 hypothetical protein compare
Xcc-8004.4954.1 -1.2 -5.7 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.1504.1 -1.2 -1.3 type IV pili signal transduction protein PilI compare
Xcc-8004.3222.1 -1.2 -1.6 Mobile element protein compare
Xcc-8004.1652.1 -1.1 -4.6 putative Cytochrome bd2, subunit II compare
Xcc-8004.3647.1 -1.1 -2.3 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.4285.1 -1.1 -5.5 two-component system sensor protein compare
Xcc-8004.713.1 -1.1 -0.8 FIG01210186: hypothetical protein compare
Xcc-8004.2563.1 -1.1 -1.4 FIG01210540: hypothetical protein compare
Xcc-8004.3049.1 -1.1 -5.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1228.1 -1.1 -4.0 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.565.1 -1.1 -3.3 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.2319.1 -1.1 -3.3 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.1619.1 -1.1 -2.7 PspA/IM30 family protein compare
Xcc-8004.1138.1 -1.1 -2.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.837.1 -1.1 -1.3 FIG01210690: hypothetical protein compare
Xcc-8004.3576.1 -1.1 -4.7 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.4301.1 -1.1 -3.2 Nucleoside permease NupC compare
Xcc-8004.4672.1 -1.1 -2.5 hypothetical protein compare
Xcc-8004.2337.1 -1.1 -3.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4065.1 -1.1 -4.4 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.2935.1 -1.1 -7.3 Amino acid transporters compare
Xcc-8004.2783.1 -1.1 -1.4 FIG01209963: hypothetical protein compare
Xcc-8004.4633.1 -1.1 -1.6 FIG01210488: hypothetical protein compare
Xcc-8004.576.1 -1.1 -2.6 FIG01210281: hypothetical protein compare
Xcc-8004.486.1 -1.0 -2.3 Lipase compare
Xcc-8004.5351.1 -1.0 -2.0 HigA protein (antitoxin to HigB) compare
Xcc-8004.4374.1 -1.0 -1.4 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Xcc-8004.337.1 -1.0 -2.1 ATPase, AFG1 family compare
Xcc-8004.2920.1 -1.0 -3.4 Ferrous iron transport protein B compare
Xcc-8004.4102.1 -1.0 -1.6 FIG01211949: hypothetical protein compare
Xcc-8004.321.1 -1.0 -6.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.494.1 -1.0 -2.6 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.4743.1 -1.0 -2.8 Peptide deformylase (EC 3.5.1.88) compare
Xcc-8004.4503.1 -1.0 -3.5 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.2358.1 -1.0 -3.8 Segregation and condensation protein A compare
Xcc-8004.1200.1 -1.0 -1.2 hypothetical protein compare
Xcc-8004.1654.1 -1.0 -0.9 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.130.1 -1.0 -3.0 hypothetical protein compare
Xcc-8004.1365.1 -1.0 -1.0 FIG01211058: hypothetical protein compare
Xcc-8004.127.1 -1.0 -1.3 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1838.1 -1.0 -0.9 FIG002958: hypothetical protein compare
Xcc-8004.4976.1 -1.0 -6.1 hypothetical protein compare
Xcc-8004.4340.1 -1.0 -2.2 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Xcc-8004.3054.1 -1.0 -1.0 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.5125.1 -1.0 -2.3 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.1710.1 -1.0 -3.6 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.4553.1 -0.9 -2.6 FIG01211682: hypothetical protein compare
Xcc-8004.1692.1 -0.9 -3.3 FOG: TPR repeat, SEL1 subfamily compare
Xcc-8004.3036.1 -0.9 -1.6 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.718.1 -0.9 -0.7 hypothetical protein compare
Xcc-8004.3281.1 -0.9 -3.8 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4275.1 -0.9 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.4371.1 -0.9 -3.5 rRNA small subunit methyltransferase I compare
Xcc-8004.1720.1 -0.9 -1.9 UPF0301 protein YqgE compare
Xcc-8004.1763.1 -0.9 -1.6 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1858.1 -0.9 -0.8 FIG01211170: hypothetical protein compare
Xcc-8004.629.1 -0.9 -1.7 hypothetical protein compare
Xcc-8004.2910.1 -0.9 -2.1 Regulatory protein, RpfE type compare
Xcc-8004.1326.1 -0.9 -2.0 hypothetical protein compare
Xcc-8004.3898.1 -0.9 -0.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.3687.1 -0.9 -2.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.2613.1 -0.9 -3.0 hypothetical protein compare
Xcc-8004.3748.1 -0.9 -2.7 (AJ250023) putative polyketide synthase compare
Xcc-8004.3721.1 -0.9 -1.0 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.1521.1 -0.9 -1.1 FIG01209895: hypothetical protein compare
Xcc-8004.386.1 -0.9 -1.7 LysR family transcriptional regulator STM3121 compare
Xcc-8004.4507.1 -0.9 -3.0 Glycosyltransferase compare
Xcc-8004.1437.1 -0.9 -2.6 Kup system potassium uptake protein compare
Xcc-8004.3689.1 -0.9 -3.9 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Xcc-8004.3212.1 -0.9 -2.4 phage-related integrase compare
Xcc-8004.1728.1 -0.9 -1.4 FIG01210339: hypothetical protein compare
Xcc-8004.1014.1 -0.9 -1.8 FIG01210031: hypothetical protein compare
Xcc-8004.4253.1 -0.9 -1.0 Transcriptional regulator, LysR family compare
Xcc-8004.782.1 -0.9 -2.1 hypothetical protein compare
Xcc-8004.5343.1 -0.9 -3.4 hypothetical protein compare
Xcc-8004.1205.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.4514.1 -0.8 -5.3 Glycosyltransferase compare
Xcc-8004.1914.1 -0.8 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.4947.1 -0.8 -1.2 Histone H1 compare
Xcc-8004.4112.1 -0.8 -1.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1601.1 -0.8 -2.6 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.4233.1 -0.8 -1.6 two-component system sensor protein compare
Xcc-8004.3018.1 -0.8 -1.1 hypothetical protein compare
Xcc-8004.3588.1 -0.8 -3.8 Homocysteine S-methyltransferase (EC 2.1.1.10) compare
Xcc-8004.4221.1 -0.8 -2.1 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.2497.1 -0.8 -0.6 Mobile element protein compare
Xcc-8004.2294.1 -0.8 -1.6 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.4457.1 -0.8 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.1266.1 -0.8 -2.1 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.3080.1 -0.8 -5.2 Galactonate dehydratase (EC 4.2.1.6) compare
Xcc-8004.3566.1 -0.8 -1.7 FIG01211130: hypothetical protein compare
Xcc-8004.1792.1 -0.8 -3.1 Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family compare
Xcc-8004.4245.1 -0.8 -2.0 FIG01213330: hypothetical protein compare
Xcc-8004.821.1 -0.8 -2.8 Sulfate permease compare
Xcc-8004.1427.1 -0.8 -2.2 Type I antifreeze protein compare
Xcc-8004.1393.1 -0.8 -2.0 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.3119.1 -0.8 -1.7 GTP-binding protein HflX compare
Xcc-8004.4231.1 -0.8 -0.8 two-component system regulatory protein compare
Xcc-8004.4737.1 -0.8 -2.5 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.409.1 -0.8 -2.5 hypothetical protein compare
Xcc-8004.2343.1 -0.8 -1.0 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3376.1 -0.8 -1.6 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.280.1 -0.8 -2.9 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.4693.1 -0.8 -0.7 hypothetical protein compare
Xcc-8004.5352.1 -0.8 -1.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.2654.1 -0.8 -2.3 FIG026426: Hypothetical protein compare
Xcc-8004.290.1 -0.8 -2.5 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.3322.1 -0.8 -0.6 FIG01211446: hypothetical protein compare
Xcc-8004.2833.1 -0.8 -1.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.1108.1 -0.8 -0.9 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.3354.1 -0.8 -3.3 Sulfate transporter family protein in cluster with carbonic anhydrase compare
Xcc-8004.938.1 -0.8 -2.9 FIG01211282: hypothetical protein compare
Xcc-8004.5064.1 -0.8 -2.7 hypothetical protein compare
Xcc-8004.4890.1 -0.8 -5.5 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.5403.1 -0.8 -2.1 Phosphatase compare
Xcc-8004.3120.1 -0.7 -1.2 RNA-binding protein Hfq compare
Xcc-8004.53.1 -0.7 -1.5 hypothetical protein compare
Xcc-8004.1880.1 -0.7 -3.4 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments