Experiment set7IT070 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM Gly-D-Asp

200 most important genes:

  gene name fitness t score description  
MMP_RS07355 -5.0 -1.2 transcription factor S compare
MMP_RS08720 -5.0 -2.3 4Fe-4S binding protein compare
MMP_RS02145 -5.0 -10.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS03435 -4.8 -2.2 ketol-acid reductoisomerase compare
MMP_RS05930 -4.4 -3.5 3-isopropylmalate dehydratase large subunit compare
MMP_RS01925 -4.3 -16.0 DUF1616 domain-containing protein compare
MMP_RS02010 -4.2 -17.8 PHP domain-containing protein compare
MMP_RS02240 -4.1 -4.2 methanogenesis marker 7 protein compare
MMP_RS06400 -4.1 -2.5 4Fe-4S binding protein compare
MMP_RS04710 -4.0 -2.2 hypothetical protein compare
MMP_RS01175 -4.0 -5.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06730 -4.0 -2.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS04455 -4.0 -27.3 nitrogenase subunit alpha compare
MMP_RS07845 -3.9 -3.0 LL-diaminopimelate aminotransferase compare
MMP_RS01500 -3.9 -3.7 CBS domain-containing protein compare
MMP_RS04440 -3.9 -14.6 nitrogenase iron protein compare
MMP_RS04450 -3.8 -21.5 P-II family nitrogen regulator compare
MMP_RS07075 -3.8 -8.5 phosphomannomutase/phosphoglucomutase compare
MMP_RS00555 -3.8 -11.7 MFS transporter compare
MMP_RS05500 -3.7 -9.6 2-isopropylmalate synthase compare
MMP_RS07380 -3.7 -3.6 transcription elongation factor Spt5 compare
MMP_RS09020 -3.7 -2.7 hypothetical protein compare
MMP_RS04465 -3.7 -21.5 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS02680 -3.7 -8.5 ABC transporter permease compare
MMP_RS08715 -3.7 -3.2 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06670 -3.6 -9.7 glucose-6-phosphate isomerase compare
MMP_RS06120 -3.6 -3.1 UPF0147 family protein compare
MMP_RS01020 -3.6 -1.6 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS04460 -3.6 -23.8 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS01960 -3.6 -1.2 hypothetical protein compare
MMP_RS07390 -3.6 -3.9 cell division protein FtsZ compare
MMP_RS02685 -3.6 -14.6 molybdate ABC transporter substrate-binding protein compare
MMP_RS08165 -3.6 -3.6 phosphoglycerate dehydrogenase compare
MMP_RS07735 -3.6 -1.2 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04445 -3.6 -11.5 P-II family nitrogen regulator compare
MMP_RS05250 -3.5 -2.6 NFYB/HAP3 family transcription factor subunit compare
MMP_RS02670 -3.5 -19.7 ATP-binding cassette domain-containing protein compare
MMP_RS02355 -3.5 -4.4 30S ribosomal protein S27ae compare
MMP_RS02730 -3.5 -15.6 ModD protein compare
MMP_RS01900 -3.5 -20.2 hypothetical protein compare
MMP_RS06475 -3.4 -6.7 FAD-dependent oxidoreductase compare
MMP_RS04470 -3.4 -18.8 nitrogenase compare
MMP_RS04790 -3.4 -15.9 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS03700 -3.4 -12.0 sodium:proton antiporter compare
MMP_RS01380 -3.4 -6.1 PHP domain-containing protein compare
MMP_RS03035 -3.4 -6.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06625 -3.4 -3.3 DNA primase compare
MMP_RS00455 -3.3 -13.8 orotate phosphoribosyltransferase-like protein compare
MMP_RS07365 -3.3 -12.0 2-phosphoglycerate kinase compare
MMP_RS00040 -3.3 -7.2 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS02675 -3.3 -5.2 hypothetical protein compare
MMP_RS02245 -3.2 -5.6 hypothetical protein compare
MMP_RS01980 -3.2 -18.1 trimeric intracellular cation channel family protein compare
MMP_RS00915 -3.1 -9.1 DUF116 domain-containing protein compare
MMP_RS01455 -3.1 -10.7 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS01725 -3.1 -5.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS03110 -3.1 -9.2 glycosyltransferase family 2 protein compare
MMP_RS06725 -3.1 -13.8 hypothetical protein compare
MMP_RS08210 -3.1 -4.0 phosphatidylglycerophosphatase A compare
MMP_RS07185 -3.0 -16.2 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06375 -3.0 -8.3 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07635 -3.0 -9.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00310 -3.0 -14.4 CBS domain-containing protein compare
MMP_RS06270 -3.0 -7.3 TIGR00300 family protein compare
MMP_RS07005 -3.0 -0.9 4Fe-4S binding protein compare
MMP_RS01610 -2.9 -4.7 hypothetical protein compare
MMP_RS01905 -2.9 -16.2 glycosyltransferase compare
MMP_RS05640 -2.9 -10.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS07730 -2.9 -3.0 pyruvate synthase subunit beta compare
MMP_RS05265 -2.9 -3.2 2-isopropylmalate synthase compare
MMP_RS01795 -2.9 -2.3 methanogenesis marker 6 protein compare
MMP_RS07875 -2.9 -6.2 hypothetical protein compare
MMP_RS01975 -2.8 -18.5 hypothetical protein compare
MMP_RS06285 -2.8 -3.8 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01225 -2.8 -6.8 DUF5379 domain-containing protein compare
MMP_RS07525 -2.8 -9.5 4Fe-4S binding protein compare
MMP_RS06895 -2.8 -2.8 selenocysteine-specific translation elongation factor compare
MMP_RS02195 -2.8 -4.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS04215 -2.8 -7.8 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS03315 -2.8 -2.3 ferrous iron transport protein A compare
MMP_RS08650 -2.7 -4.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS04685 -2.7 -4.2 DUF126 domain-containing protein compare
MMP_RS08790 -2.7 -3.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS08645 -2.7 -9.0 UPF0179 family protein compare
MMP_RS00515 -2.6 -1.2 DUF655 domain-containing protein compare
MMP_RS07445 -2.6 -7.9 helix-turn-helix domain-containing protein compare
MMP_RS06315 -2.6 -1.2 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS01910 -2.6 -14.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS03600 -2.6 -3.4 triose-phosphate isomerase compare
MMP_RS00685 -2.6 -6.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01545 -2.6 -1.6 CBS domain-containing protein compare
MMP_RS01830 -2.6 -2.2 tRNA-Val compare
MMP_RS04780 -2.6 -4.2 ribonuclease P compare
MMP_RS05925 -2.5 -5.8 small nuclear ribonucleoprotein compare
MMP_RS01875 -2.5 -13.5 N-acetyltransferase compare
MMP_RS03960 -2.5 -1.5 hypothetical protein compare
MMP_RS01800 -2.5 -4.5 TIGR00303 family protein compare
MMP_RS08440 -2.5 -4.1 cell division protein SepF compare
MMP_RS01915 -2.5 -15.0 DUF354 domain-containing protein compare
MMP_RS01885 -2.5 -8.3 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS01880 -2.4 -7.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS07605 -2.4 -5.2 diadenylate cyclase compare
MMP_RS06295 -2.4 -9.9 methanogenesis marker 14 protein compare
MMP_RS00695 -2.4 -1.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07555 -2.4 -0.9 monovalent cation/H+ antiporter subunit E compare
MMP_RS08300 -2.4 -1.5 metal-sulfur cluster assembly factor compare
MMP_RS04585 -2.4 -12.2 AIR synthase related protein compare
MMP_RS07435 -2.4 -2.9 GMP synthase subunit A compare
MMP_RS00110 -2.4 -4.2 hypothetical protein compare
MMP_RS01700 -2.4 -1.0 dihydroxy-acid dehydratase compare
MMP_RS03025 -2.4 -6.4 molybdenum cofactor guanylyltransferase compare
MMP_RS03205 -2.3 -2.1 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08500 -2.3 -6.4 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS05460 -2.3 -13.8 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS06855 -2.3 -11.4 hypothetical protein compare
MMP_RS08195 -2.3 -10.8 hypothetical protein compare
MMP_RS05425 -2.2 -5.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01970 -2.2 -13.8 TIGR04279 domain-containing protein compare
MMP_RS08155 -2.2 -9.5 hypothetical protein compare
MMP_RS08860 -2.2 -5.1 MinD/ParA family protein compare
MMP_RS02135 -2.2 -7.2 DUF5612 domain-containing protein compare
MMP_RS05550 -2.2 -1.0 cation:proton antiporter compare
MMP_RS06020 -2.2 -6.1 archaeoflavoprotein AfpA compare
MMP_RS07600 -2.2 -2.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07725 -2.2 -4.7 4Fe-4S dicluster domain-containing protein compare
MMP_RS00300 -2.2 -0.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03485 -2.2 -8.2 TIGR00267 family protein compare
MMP_RS04605 -2.1 -5.3 cobalt ECF transporter T component CbiQ compare
MMP_RS02800 -2.1 -8.2 nucleotidyltransferase domain-containing protein compare
MMP_RS00810 -2.1 -9.6 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03445 -2.1 -1.3 methanogenesis marker 17 protein compare
MMP_RS02345 -2.1 -4.6 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04890 -2.0 -1.1 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS08330 -2.0 -6.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS02280 -2.0 -1.2 DUF211 domain-containing protein compare
MMP_RS05540 -2.0 -3.2 hypothetical protein compare
MMP_RS01955 -2.0 -3.9 hypothetical protein compare
MMP_RS01755 -2.0 -2.0 DUF2097 domain-containing protein compare
MMP_RS05430 -2.0 -6.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS04090 -2.0 -4.1 hypothetical protein compare
MMP_RS06975 -2.0 -2.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS01265 -2.0 -2.5 hypothetical protein compare
MMP_RS00305 -1.9 -1.9 phosphoribosyl-ATP diphosphatase compare
MMP_RS01220 -1.9 -9.1 hypothetical protein compare
MMP_RS05845 -1.9 -2.4 tRNA-intron lyase compare
MMP_RS08435 -1.9 -3.2 Era-like GTP-binding protein compare
MMP_RS00985 -1.9 -5.5 CDC48 family AAA ATPase compare
MMP_RS01005 -1.9 -2.1 riboflavin synthase compare
MMP_RS04720 -1.9 -2.7 DedA family protein compare
MMP_RS07750 -1.9 -5.5 DUF357 domain-containing protein compare
MMP_RS07710 -1.9 -8.4 cell division protein FtsZ compare
MMP_RS04775 -1.8 -4.0 adenosylhomocysteinase compare
MMP_RS05535 -1.8 -4.9 hypothetical protein compare
MMP_RS03475 -1.8 -1.0 hypothetical protein compare
MMP_RS07545 -1.8 -1.4 HTH domain-containing protein compare
MMP_RS07090 -1.8 -8.6 tRNA (adenine-N1)-methyltransferase compare
MMP_RS05555 -1.8 -1.7 DUF4040 domain-containing protein compare
MMP_RS05515 -1.8 -6.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01385 -1.8 -0.8 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS04870 -1.8 -6.4 TIGR02253 family HAD-type hydrolase compare
MMP_RS04900 -1.8 -12.5 hypothetical protein compare
MMP_RS07700 -1.7 -8.8 DUF1188 domain-containing protein compare
MMP_RS05440 -1.7 -9.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS01890 -1.7 -4.7 nucleotide sugar dehydrogenase compare
MMP_RS06900 -1.7 -3.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS06885 -1.7 -2.9 50S ribosome-binding GTPase compare
MMP_RS07820 -1.7 -4.0 UPF0104 family protein compare
MMP_RS07695 -1.7 -6.8 DUF3236 domain-containing protein compare
MMP_RS04955 -1.7 -5.4 DNA topoisomerase I compare
MMP_RS07575 -1.7 -4.0 RNA ligase partner protein compare
MMP_RS05285 -1.7 -6.6 MMPL family transporter compare
MMP_RS05280 -1.7 -7.6 COG1361 S-layer family protein compare
MMP_RS07200 -1.7 -5.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07420 -1.7 -5.5 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS07535 -1.6 -7.2 4Fe-4S binding protein compare
MMP_RS08570 -1.6 -8.0 coenzyme F420-0:L-glutamate ligase compare
MMP_RS01920 -1.6 -11.6 glycosyltransferase family 2 protein compare
MMP_RS06310 -1.6 -3.9 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS01895 -1.6 -10.1 flippase compare
MMP_RS03420 -1.6 -2.2 acetolactate synthase small subunit compare
MMP_RS00115 -1.6 -9.6 radical SAM protein compare
MMP_RS03580 -1.6 -3.1 signal recognition particle-docking protein FtsY compare
MMP_RS05765 -1.6 -5.3 M42 family metallopeptidase compare
MMP_RS00725 -1.6 -6.3 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01665 -1.5 -3.9 DUF2111 domain-containing protein compare
MMP_RS04850 -1.5 -11.4 UPF0254 family protein compare
MMP_RS04875 -1.5 -5.8 energy-converting hydrogenase B subunit P compare
MMP_RS00895 -1.5 -3.2 hypothetical protein compare
MMP_RS06105 -1.5 -7.8 hydrogenase maturation peptidase HycI compare
MMP_RS02780 -1.5 -6.2 hypothetical protein compare
MMP_RS00720 -1.5 -7.8 metal-dependent hydrolase compare
MMP_RS05875 -1.4 -2.5 hydroxyethylthiazole kinase compare
MMP_RS03400 -1.4 -3.1 archease compare
MMP_RS07530 -1.4 -9.0 4Fe-4S binding protein compare
MMP_RS02165 -1.4 -6.1 tRNA-dihydrouridine synthase compare
MMP_RS05020 -1.4 -4.1 hypothetical protein compare
MMP_RS06630 -1.4 -0.9 UPF0058 family protein compare
MMP_RS05295 -1.4 -8.1 minichromosome maintenance protein MCM compare
MMP_RS01370 -1.4 -8.7 acetate--CoA ligase family protein compare
MMP_RS00900 -1.4 -2.2 50S ribosomal protein L39e compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Gly-DL-Asp in Methanococcus maripaludis S2

For nitrogen source Gly-DL-Asp across organisms