Experiment set7IT069 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2335.1 -3.6 -4.9 Transport ATP-binding protein CydC compare
Xcc-8004.3041.1 -3.4 -4.6 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.623.1 -3.3 -2.3 Phosphoserine phosphatase compare
Xcc-8004.1436.1 -3.1 -2.1 Holliday junction DNA helicase RuvA compare
Xcc-8004.2182.1 -2.8 -13.9 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2334.1 -2.8 -7.7 Transport ATP-binding protein CydD compare
Xcc-8004.1007.1 -2.8 -1.8 acetylxylan esterase compare
Xcc-8004.1162.1 -2.8 -3.6 FIG01210644: hypothetical protein compare
Xcc-8004.4699.1 -2.8 -1.9 Flagellar motor protein compare
Xcc-8004.2921.1 -2.8 -3.8 ferrous iron transport protein compare
Xcc-8004.127.1 -2.7 -1.8 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3976.1 -2.5 -5.9 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1790.1 -2.5 -4.9 Zinc uptake regulation protein ZUR compare
Xcc-8004.1961.1 -2.4 -2.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.2922.1 -2.4 -2.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1359.1 -2.3 -6.9 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4810.1 -2.2 -9.0 hypothetical protein compare
Xcc-8004.4596.1 -2.2 -8.1 hypothetical protein compare
Xcc-8004.4620.1 -2.2 -5.8 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.574.1 -2.2 -7.5 Di-/tripeptide transporter compare
Xcc-8004.4732.1 -2.1 -2.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1228.1 -2.0 -5.9 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.4039.1 -2.0 -2.5 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.3321.1 -2.0 -2.1 FIG01209847: hypothetical protein compare
Xcc-8004.957.1 -2.0 -3.5 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1241.1 -2.0 -4.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3320.1 -1.9 -1.6 FIG01209869: hypothetical protein compare
Xcc-8004.3979.1 -1.9 -8.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.1372.1 -1.9 -2.2 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1727.1 -1.9 -2.0 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.337.1 -1.9 -2.9 ATPase, AFG1 family compare
Xcc-8004.1651.1 -1.8 -5.7 putative Cytochrome bd2, subunit I compare
Xcc-8004.2923.1 -1.8 -7.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.4871.1 -1.8 -2.0 Phage tail completion protein compare
Xcc-8004.3726.1 -1.8 -1.9 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.130.1 -1.8 -6.1 hypothetical protein compare
Xcc-8004.787.1 -1.8 -1.2 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.1137.1 -1.8 -1.7 FIG006231: RNA-binding protein compare
Xcc-8004.4671.1 -1.7 -3.9 FIG01212254: hypothetical protein compare
Xcc-8004.2920.1 -1.7 -6.6 Ferrous iron transport protein B compare
Xcc-8004.1568.1 -1.7 -2.0 Glycine cleavage system H protein compare
Xcc-8004.319.1 -1.7 -8.3 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.3655.1 -1.6 -1.7 FIG01210025: hypothetical protein compare
Xcc-8004.2652.1 -1.6 -2.5 response regulator compare
Xcc-8004.5122.1 -1.6 -2.1 hypothetical protein compare
Xcc-8004.4306.1 -1.6 -2.7 hypothetical protein compare
Xcc-8004.1880.1 -1.6 -5.8 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.4100.1 -1.6 -2.6 hypothetical protein compare
Xcc-8004.2892.1 -1.6 -2.7 FIG01210619: hypothetical protein compare
Xcc-8004.4221.1 -1.6 -4.3 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.5343.1 -1.6 -5.4 hypothetical protein compare
Xcc-8004.3395.1 -1.5 -3.1 Transcriptional regulator, GntR family compare
Xcc-8004.3721.1 -1.5 -1.8 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.3512.1 -1.5 -1.9 Transcription repressor of tripartite multidrug resistance system compare
Xcc-8004.659.1 -1.5 -2.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1567.1 -1.5 -4.5 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.4788.1 -1.5 -1.5 FIG01210406: hypothetical protein compare
Xcc-8004.4477.1 -1.5 -2.0 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.2059.1 -1.5 -1.6 hypothetical protein compare
Xcc-8004.494.1 -1.5 -3.7 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.785.1 -1.5 -3.1 hypothetical protein compare
Xcc-8004.2169.1 -1.5 -2.9 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1236.1 -1.4 -3.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.5252.1 -1.4 -4.4 FIG01210658: hypothetical protein compare
Xcc-8004.1118.1 -1.4 -1.4 hypothetical protein compare
Xcc-8004.2337.1 -1.4 -3.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.4046.1 -1.4 -6.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3376.1 -1.4 -2.6 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.2449.1 -1.4 -3.9 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.3794.1 -1.4 -1.7 Mobile element protein compare
Xcc-8004.1587.1 -1.4 -2.7 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Xcc-8004.3783.1 -1.3 -4.0 Two-component system sensor protein compare
Xcc-8004.1243.1 -1.3 -5.2 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.4301.1 -1.3 -3.5 Nucleoside permease NupC compare
Xcc-8004.4441.1 -1.3 -2.5 Tyrosine recombinase XerD compare
Xcc-8004.603.1 -1.3 -3.4 hypothetical protein compare
Xcc-8004.1416.1 -1.3 -2.2 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.53.1 -1.3 -2.9 hypothetical protein compare
Xcc-8004.1839.1 -1.3 -1.5 FIG01210863: hypothetical protein compare
Xcc-8004.1955.1 -1.2 -4.4 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.778.1 -1.2 -2.3 FIG01214273: hypothetical protein compare
Xcc-8004.3402.1 -1.2 -2.4 FIG01210246: hypothetical protein compare
Xcc-8004.4231.1 -1.2 -1.1 two-component system regulatory protein compare
Xcc-8004.5168.1 -1.2 -0.9 hypothetical protein compare
Xcc-8004.3722.1 -1.2 -1.1 HrpB7 protein compare
Xcc-8004.1005.1 -1.2 -2.3 FIG01210629: hypothetical protein compare
Xcc-8004.2924.1 -1.2 -3.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.1082.1 -1.2 -1.8 FIG01211203: hypothetical protein compare
Xcc-8004.3230.1 -1.2 -1.6 Phage DNA invertase compare
Xcc-8004.4457.1 -1.2 -2.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.401.1 -1.2 -2.1 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.3576.1 -1.2 -4.1 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1205.1 -1.2 -2.1 hypothetical protein compare
Xcc-8004.1615.1 -1.2 -1.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.5185.1 -1.2 -1.2 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.1652.1 -1.1 -5.8 putative Cytochrome bd2, subunit II compare
Xcc-8004.1763.1 -1.1 -1.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1045.1 -1.1 -2.5 hypothetical protein compare
Xcc-8004.3882.1 -1.1 -2.6 hypothetical protein compare
Xcc-8004.287.1 -1.1 -2.7 Haloalkane dehalogenase-like protein compare
Xcc-8004.2495.1 -1.1 -1.2 hypothetical protein compare
Xcc-8004.3753.1 -1.1 -2.4 putative secreted protein compare
Xcc-8004.280.1 -1.1 -3.9 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.3752.1 -1.1 -1.2 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.3049.1 -1.1 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3687.1 -1.1 -3.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.1919.1 -1.1 -4.3 FIG056164: rhomboid family serine protease compare
Xcc-8004.2646.1 -1.1 -2.1 hypothetical protein compare
Xcc-8004.4694.1 -1.1 -1.7 FIG01210824: hypothetical protein compare
Xcc-8004.2168.1 -1.1 -2.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3663.1 -1.1 -1.9 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.3595.1 -1.0 -1.7 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.2011.1 -1.0 -1.7 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4285.1 -1.0 -5.3 two-component system sensor protein compare
Xcc-8004.1720.1 -1.0 -1.5 UPF0301 protein YqgE compare
Xcc-8004.2117.1 -1.0 -3.3 FIG01209809: hypothetical protein compare
Xcc-8004.5280.1 -1.0 -1.9 hypothetical protein compare
Xcc-8004.409.1 -1.0 -2.3 hypothetical protein compare
Xcc-8004.5140.1 -1.0 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.3674.1 -1.0 -2.8 FIG01209931: hypothetical protein compare
Xcc-8004.2434.1 -1.0 -2.8 hypothetical protein compare
Xcc-8004.5100.1 -1.0 -2.1 FIG01211066: hypothetical protein compare
Xcc-8004.318.1 -1.0 -4.0 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.4403.1 -1.0 -1.8 Arsenate reductase (EC 1.20.4.1) compare
Xcc-8004.3855.1 -1.0 -3.5 FIG01209965: hypothetical protein compare
Xcc-8004.4976.1 -1.0 -6.0 hypothetical protein compare
Xcc-8004.411.1 -1.0 -2.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.5253.1 -1.0 -0.9 hypothetical protein compare
Xcc-8004.1249.1 -1.0 -3.9 Transcriptional regulator compare
Xcc-8004.3303.1 -1.0 -1.5 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.1859.1 -1.0 -1.9 Transcriptional regulator compare
Xcc-8004.1890.1 -1.0 -2.8 hypothetical protein compare
Xcc-8004.2644.1 -0.9 -2.0 hypothetical protein compare
Xcc-8004.3281.1 -0.9 -3.2 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.624.1 -0.9 -3.5 Cyclic AMP receptor protein compare
Xcc-8004.4735.1 -0.9 -3.2 FIG01210211: hypothetical protein compare
Xcc-8004.576.1 -0.9 -1.3 FIG01210281: hypothetical protein compare
Xcc-8004.2574.1 -0.9 -1.2 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.3978.1 -0.9 -1.8 FIG01211989: hypothetical protein compare
Xcc-8004.4024.1 -0.9 -3.7 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.4296.1 -0.9 -1.3 Hemin transport protein compare
Xcc-8004.5082.1 -0.9 -2.7 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Xcc-8004.5367.1 -0.9 -3.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.1380.1 -0.9 -0.6 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.4697.1 -0.9 -1.8 FIG01210654: hypothetical protein compare
Xcc-8004.2357.1 -0.9 -2.2 Segregation and condensation protein B compare
Xcc-8004.1553.1 -0.9 -3.6 predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59) compare
Xcc-8004.4503.1 -0.9 -2.9 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.3757.1 -0.9 -1.5 Mobile element protein compare
Xcc-8004.4884.1 -0.9 -1.8 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.878.1 -0.9 -3.5 Sugar kinase compare
Xcc-8004.4890.1 -0.9 -6.3 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.117.1 -0.9 -1.8 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.1680.1 -0.9 -3.6 FIG006611: nucleotidyltransferase compare
Xcc-8004.1108.1 -0.9 -1.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.171.1 -0.9 -0.8 hypothetical protein compare
Xcc-8004.589.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.4078.1 -0.9 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.950.1 -0.9 -0.7 General secretion pathway protein L compare
Xcc-8004.5125.1 -0.9 -1.8 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.399.1 -0.8 -1.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.807.1 -0.8 -1.3 FIG01212592: hypothetical protein compare
Xcc-8004.1032.1 -0.8 -3.3 Sensor histidine kinase compare
Xcc-8004.1950.1 -0.8 -1.4 FIG01210891: hypothetical protein compare
Xcc-8004.5297.1 -0.8 -1.6 Thioredoxin reductase (EC 1.8.1.9) compare
Xcc-8004.3795.1 -0.8 -2.0 Histidine kinase/response regulator hybrid protein compare
Xcc-8004.5335.1 -0.8 -1.4 FIG01214241: hypothetical protein compare
Xcc-8004.4222.1 -0.8 -3.5 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Xcc-8004.1138.1 -0.8 -2.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.321.1 -0.8 -5.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.1678.1 -0.8 -2.7 Putative permease often clustered with de novo purine synthesis compare
Xcc-8004.48.1 -0.8 -2.2 FIG01212903: hypothetical protein compare
Xcc-8004.773.1 -0.8 -2.5 Transcriptional regulator marR family compare
Xcc-8004.1466.1 -0.8 -1.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.4049.1 -0.8 -3.3 Cell division trigger factor (EC 5.2.1.8) compare
Xcc-8004.4250.1 -0.8 -1.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.4954.1 -0.8 -3.2 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.2911.1 -0.8 -1.0 Transcription elongation factor GreA compare
Xcc-8004.3313.1 -0.8 -2.4 LSU ribosomal protein L9p compare
Xcc-8004.5226.1 -0.8 -1.6 FIG01212167: hypothetical protein compare
Xcc-8004.1772.1 -0.8 -2.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.3040.1 -0.8 -1.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.3917.1 -0.8 -1.7 Mlr4646 protein compare
Xcc-8004.5302.1 -0.8 -1.7 FIG039767: hypothetical protein compare
Xcc-8004.3310.1 -0.8 -1.9 Chromosome partition protein smc compare
Xcc-8004.3087.1 -0.8 -2.2 FIG01211583: hypothetical protein compare
Xcc-8004.421.1 -0.8 -1.3 Xanthomonadin biosynthesis related protein compare
Xcc-8004.3685.1 -0.8 -2.2 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Xcc-8004.195.1 -0.8 -0.7 phosphoesterase, putative compare
Xcc-8004.4275.1 -0.8 -2.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.3731.1 -0.8 -1.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.4507.1 -0.8 -3.1 Glycosyltransferase compare
Xcc-8004.1658.1 -0.8 -2.7 hypothetical protein compare
Xcc-8004.4558.1 -0.8 -1.1 ABC transporter permease compare
Xcc-8004.2282.1 -0.8 -1.4 tRNA:Cm32/Um32 methyltransferase compare
Xcc-8004.2935.1 -0.8 -5.3 Amino acid transporters compare
Xcc-8004.4328.1 -0.8 -2.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4376.1 -0.8 -3.1 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.3333.1 -0.8 -1.9 5'-nucleotidase (EC 3.1.3.5) compare
Xcc-8004.689.1 -0.8 -1.1 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction experiments