Experiment set7IT069 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM L-Asparagine

200 most important genes:

  gene name fitness t score description  
MMP_RS04445 -5.9 -10.4 P-II family nitrogen regulator compare
MMP_RS03960 -5.6 -1.3 hypothetical protein compare
MMP_RS03315 -5.5 -2.2 ferrous iron transport protein A compare
MMP_RS04450 -5.4 -14.8 P-II family nitrogen regulator compare
MMP_RS04440 -5.2 -13.9 nitrogenase iron protein compare
MMP_RS01175 -5.0 -6.4 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04455 -5.0 -25.4 nitrogenase subunit alpha compare
MMP_RS04465 -5.0 -19.6 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS04460 -4.9 -24.4 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS07345 -4.9 -7.6 glycine synthesis protein GlyXL (from data) compare
MMP_RS04470 -4.9 -19.5 nitrogenase compare
MMP_RS07390 -4.7 -4.4 cell division protein FtsZ compare
MMP_RS03450 -4.6 -3.6 glycine synthesis protein GlyXS (from data) compare
MMP_RS00555 -4.5 -12.8 MFS transporter compare
MMP_RS01500 -4.4 -4.3 CBS domain-containing protein compare
MMP_RS02145 -4.4 -13.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS01385 -4.2 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS04710 -4.2 -3.1 hypothetical protein compare
MMP_RS07635 -4.2 -11.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07845 -4.2 -3.6 LL-diaminopimelate aminotransferase compare
MMP_RS05500 -4.1 -13.1 2-isopropylmalate synthase compare
MMP_RS07185 -4.1 -16.0 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00040 -4.1 -6.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS03035 -4.0 -6.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06285 -3.9 -4.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08165 -3.9 -4.1 phosphoglycerate dehydrogenase compare
MMP_RS06400 -3.9 -2.5 4Fe-4S binding protein compare
MMP_RS01455 -3.9 -9.7 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS08720 -3.8 -3.0 4Fe-4S binding protein compare
MMP_RS04090 -3.8 -4.5 hypothetical protein compare
MMP_RS02675 -3.7 -5.5 hypothetical protein compare
MMP_RS00455 -3.7 -10.1 orotate phosphoribosyltransferase-like protein compare
MMP_RS08715 -3.7 -3.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS05930 -3.7 -3.7 3-isopropylmalate dehydratase large subunit compare
MMP_RS07730 -3.7 -3.1 pyruvate synthase subunit beta compare
MMP_RS02010 -3.7 -15.7 PHP domain-containing protein compare
MMP_RS07525 -3.6 -9.7 4Fe-4S binding protein compare
MMP_RS06270 -3.6 -6.8 TIGR00300 family protein compare
MMP_RS09020 -3.6 -2.9 hypothetical protein compare
MMP_RS02245 -3.4 -5.4 hypothetical protein compare
MMP_RS06730 -3.4 -2.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS06355 -3.4 -5.3 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS03435 -3.4 -2.8 ketol-acid reductoisomerase compare
MMP_RS01545 -3.4 -1.7 CBS domain-containing protein compare
MMP_RS08440 -3.3 -4.7 cell division protein SepF compare
MMP_RS08635 -3.3 -3.5 UbiA family prenyltransferase compare
MMP_RS02240 -3.3 -4.9 methanogenesis marker 7 protein compare
MMP_RS02685 -3.2 -17.7 molybdate ABC transporter substrate-binding protein compare
MMP_RS00305 -3.2 -3.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS02355 -3.2 -5.5 30S ribosomal protein S27ae compare
MMP_RS07005 -3.2 -1.0 4Fe-4S binding protein compare
MMP_RS08650 -3.2 -5.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06475 -3.1 -6.5 FAD-dependent oxidoreductase compare
MMP_RS06725 -3.1 -13.3 hypothetical protein compare
MMP_RS05515 -3.0 -9.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06375 -3.0 -7.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS08210 -3.0 -3.9 phosphatidylglycerophosphatase A compare
MMP_RS04585 -3.0 -13.2 AIR synthase related protein compare
MMP_RS07380 -3.0 -3.6 transcription elongation factor Spt5 compare
MMP_RS01005 -3.0 -2.1 riboflavin synthase compare
MMP_RS02670 -3.0 -13.7 ATP-binding cassette domain-containing protein compare
MMP_RS01610 -2.9 -5.2 hypothetical protein compare
MMP_RS06295 -2.9 -11.4 methanogenesis marker 14 protein compare
MMP_RS03700 -2.8 -10.6 sodium:proton antiporter compare
MMP_RS03110 -2.8 -8.7 glycosyltransferase family 2 protein compare
MMP_RS02730 -2.8 -15.6 ModD protein compare
MMP_RS07605 -2.8 -5.6 diadenylate cyclase compare
MMP_RS07445 -2.8 -6.0 helix-turn-helix domain-containing protein compare
MMP_RS03015 -2.8 -11.3 GTP 3' 8-cyclase MoaA compare
MMP_RS07435 -2.8 -2.6 GMP synthase subunit A compare
MMP_RS00750 -2.7 -2.7 fumarate hydratase compare
MMP_RS05550 -2.7 -1.2 cation:proton antiporter compare
MMP_RS04215 -2.7 -9.2 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01795 -2.7 -2.6 methanogenesis marker 6 protein compare
MMP_RS07735 -2.6 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06120 -2.6 -3.6 UPF0147 family protein compare
MMP_RS01755 -2.6 -2.5 DUF2097 domain-containing protein compare
MMP_RS07075 -2.6 -4.7 phosphomannomutase/phosphoglucomutase compare
MMP_RS03580 -2.6 -4.8 signal recognition particle-docking protein FtsY compare
MMP_RS01020 -2.6 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05250 -2.6 -2.9 NFYB/HAP3 family transcription factor subunit compare
MMP_RS03445 -2.6 -1.5 methanogenesis marker 17 protein compare
MMP_RS01900 -2.6 -15.6 hypothetical protein compare
MMP_RS01265 -2.6 -3.2 hypothetical protein compare
MMP_RS05640 -2.5 -9.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS06020 -2.5 -6.8 archaeoflavoprotein AfpA compare
MMP_RS01225 -2.5 -8.6 DUF5379 domain-containing protein compare
MMP_RS00915 -2.5 -7.0 DUF116 domain-containing protein compare
MMP_RS06350 -2.5 -7.6 HesA/MoeB/ThiF family protein compare
MMP_RS06230 -2.5 -4.3 helix-turn-helix domain-containing protein compare
MMP_RS00310 -2.5 -8.1 CBS domain-containing protein compare
MMP_RS00985 -2.5 -7.0 CDC48 family AAA ATPase compare
MMP_RS04870 -2.5 -8.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS02680 -2.4 -9.3 ABC transporter permease compare
MMP_RS01800 -2.4 -4.9 TIGR00303 family protein compare
MMP_RS05430 -2.4 -5.7 TIGR00288 family NYN domain-containing protein compare
MMP_RS01960 -2.4 -1.4 hypothetical protein compare
MMP_RS07575 -2.4 -5.1 RNA ligase partner protein compare
MMP_RS06625 -2.4 -3.0 DNA primase compare
MMP_RS06670 -2.4 -7.2 glucose-6-phosphate isomerase compare
MMP_RS08460 -2.3 -3.6 proteasome-activating nucleotidase compare
MMP_RS04900 -2.3 -17.2 hypothetical protein compare
MMP_RS04685 -2.3 -5.1 DUF126 domain-containing protein compare
MMP_RS00515 -2.3 -1.2 DUF655 domain-containing protein compare
MMP_RS01925 -2.3 -10.8 DUF1616 domain-containing protein compare
MMP_RS03025 -2.3 -6.9 molybdenum cofactor guanylyltransferase compare
MMP_RS07200 -2.3 -6.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01380 -2.3 -8.3 PHP domain-containing protein compare
MMP_RS08500 -2.3 -9.0 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS00300 -2.3 -1.0 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS08435 -2.3 -3.2 Era-like GTP-binding protein compare
MMP_RS02900 -2.3 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS02345 -2.3 -5.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS08790 -2.2 -2.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS08645 -2.2 -8.9 UPF0179 family protein compare
MMP_RS01975 -2.2 -15.5 hypothetical protein compare
MMP_RS07365 -2.2 -13.9 2-phosphoglycerate kinase compare
MMP_RS07600 -2.2 -3.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07355 -2.2 -1.4 transcription factor S compare
MMP_RS05265 -2.2 -3.8 2-isopropylmalate synthase compare
MMP_RS01905 -2.1 -13.4 glycosyltransferase compare
MMP_RS01700 -2.1 -1.1 dihydroxy-acid dehydratase compare
MMP_RS01830 -2.1 -1.8 tRNA-Val compare
MMP_RS00725 -2.0 -8.6 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01325 -2.0 -2.3 dihydroneopterin aldolase family protein compare
MMP_RS07695 -2.0 -8.5 DUF3236 domain-containing protein compare
MMP_RS03640 -2.0 -5.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS01220 -2.0 -8.1 hypothetical protein compare
MMP_RS06340 -2.0 -9.4 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS04780 -2.0 -3.8 ribonuclease P compare
MMP_RS06855 -1.9 -9.6 hypothetical protein compare
MMP_RS01885 -1.9 -8.1 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS07700 -1.9 -12.3 DUF1188 domain-containing protein compare
MMP_RS06395 -1.9 -4.6 ThiF family adenylyltransferase compare
MMP_RS03485 -1.8 -7.3 TIGR00267 family protein compare
MMP_RS07710 -1.8 -7.5 cell division protein FtsZ compare
MMP_RS05540 -1.8 -2.6 hypothetical protein compare
MMP_RS00810 -1.8 -8.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01875 -1.8 -11.1 N-acetyltransferase compare
MMP_RS04605 -1.8 -7.4 cobalt ECF transporter T component CbiQ compare
MMP_RS00735 -1.8 -4.7 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS01890 -1.8 -5.9 nucleotide sugar dehydrogenase compare
MMP_RS01970 -1.8 -11.9 TIGR04279 domain-containing protein compare
MMP_RS04850 -1.8 -14.0 UPF0254 family protein compare
MMP_RS08760 -1.8 -1.8 hypothetical protein compare
MMP_RS08195 -1.8 -11.5 hypothetical protein compare
MMP_RS05925 -1.7 -4.6 small nuclear ribonucleoprotein compare
MMP_RS00685 -1.7 -4.9 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04790 -1.7 -11.9 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01880 -1.7 -6.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS04955 -1.7 -7.1 DNA topoisomerase I compare
MMP_RS06175 -1.7 -6.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS01915 -1.7 -11.1 DUF354 domain-containing protein compare
MMP_RS08860 -1.7 -7.9 MinD/ParA family protein compare
MMP_RS00730 -1.7 -5.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS01665 -1.7 -3.2 DUF2111 domain-containing protein compare
MMP_RS07955 -1.7 -3.7 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS02780 -1.7 -6.4 hypothetical protein compare
MMP_RS08745 -1.6 -7.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS00315 -1.6 -6.1 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS06940 -1.6 -3.6 polyprenyl diphosphate synthase compare
MMP_RS08300 -1.6 -1.3 metal-sulfur cluster assembly factor compare
MMP_RS07090 -1.6 -6.8 tRNA (adenine-N1)-methyltransferase compare
MMP_RS06895 -1.5 -1.8 selenocysteine-specific translation elongation factor compare
MMP_RS06865 -1.5 -1.9 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06840 -1.5 -1.2 DNA-directed RNA polymerase subunit N compare
MMP_RS01725 -1.5 -5.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS02165 -1.5 -7.7 tRNA-dihydrouridine synthase compare
MMP_RS02800 -1.5 -9.2 nucleotidyltransferase domain-containing protein compare
MMP_RS07535 -1.5 -8.1 4Fe-4S binding protein compare
MMP_RS07685 -1.5 -7.4 TIGR01212 family radical SAM protein compare
MMP_RS01910 -1.4 -8.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS08705 -1.4 -6.6 sulfopyruvate decarboxylase subunit beta compare
MMP_RS02135 -1.4 -3.7 DUF5612 domain-containing protein compare
MMP_RS07630 -1.4 -1.4 ATP-binding cassette domain-containing protein compare
MMP_RS02195 -1.4 -2.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS05345 -1.4 -5.9 hypothetical protein compare
MMP_RS06315 -1.4 -1.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS05815 -1.4 -2.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS05020 -1.4 -3.4 hypothetical protein compare
MMP_RS06630 -1.4 -1.0 UPF0058 family protein compare
MMP_RS08155 -1.4 -5.7 hypothetical protein compare
MMP_RS04615 -1.3 -4.0 PDGLE domain-containing protein compare
MMP_RS01365 -1.3 -2.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS04875 -1.3 -5.3 energy-converting hydrogenase B subunit P compare
MMP_RS05425 -1.3 -4.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS06485 -1.3 -1.2 zinc ribbon domain-containing protein compare
MMP_RS00520 -1.3 -2.0 RNA polymerase Rpb4 family protein compare
MMP_RS08330 -1.3 -5.4 NADH-quinone oxidoreductase subunit H compare
MMP_RS01085 -1.3 -2.2 hypothetical protein compare
MMP_RS00720 -1.3 -6.6 metal-dependent hydrolase compare
MMP_RS08820 -1.3 -4.9 hypothetical protein compare
MMP_RS04720 -1.3 -2.2 DedA family protein compare
MMP_RS05440 -1.2 -7.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS00320 -1.2 -2.0 class I SAM-dependent methyltransferase compare
MMP_RS05460 -1.2 -7.6 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS04620 -1.2 -8.1 cobalt transporter CbiM compare
MMP_RS06925 -1.2 -2.8 ribonuclease VapC4 compare
MMP_RS02235 -1.2 -6.6 CBS domain-containing protein compare
MMP_RS01955 -1.2 -3.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source L-Asparagine across organisms