Experiment set7IT067 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4039.1 -3.5 -3.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.1359.1 -3.1 -7.2 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.659.1 -3.1 -3.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2922.1 -2.9 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.2182.1 -2.9 -14.9 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.589.1 -2.9 -2.9 hypothetical protein compare
Xcc-8004.1241.1 -2.8 -4.8 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4620.1 -2.8 -8.9 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.127.1 -2.7 -1.9 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.623.1 -2.7 -2.4 Phosphoserine phosphatase compare
Xcc-8004.2217.1 -2.6 -3.9 FIG01209779: hypothetical protein compare
Xcc-8004.1372.1 -2.5 -1.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4000.1 -2.5 -3.2 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.3976.1 -2.4 -4.7 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1790.1 -2.4 -3.9 Zinc uptake regulation protein ZUR compare
Xcc-8004.4013.1 -2.3 -2.5 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.1727.1 -2.3 -3.4 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1236.1 -2.2 -5.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.2012.1 -2.1 -6.7 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1615.1 -2.1 -1.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1244.1 -2.0 -8.2 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.4810.1 -2.0 -9.5 hypothetical protein compare
Xcc-8004.2259.1 -2.0 -4.3 PhbF compare
Xcc-8004.337.1 -2.0 -3.0 ATPase, AFG1 family compare
Xcc-8004.2343.1 -1.9 -2.3 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3979.1 -1.9 -7.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3322.1 -1.9 -1.7 FIG01211446: hypothetical protein compare
Xcc-8004.3728.1 -1.9 -1.4 hypothetical protein compare
Xcc-8004.3395.1 -1.9 -3.0 Transcriptional regulator, GntR family compare
Xcc-8004.130.1 -1.9 -5.7 hypothetical protein compare
Xcc-8004.3346.1 -1.8 -3.0 hypothetical protein compare
Xcc-8004.1133.1 -1.7 -1.7 Rubredoxin compare
Xcc-8004.1809.1 -1.7 -1.8 extracellular serine protease compare
Xcc-8004.3731.1 -1.7 -1.5 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.4275.1 -1.6 -4.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.2923.1 -1.6 -7.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.171.1 -1.6 -1.1 hypothetical protein compare
Xcc-8004.3376.1 -1.6 -2.4 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.2372.1 -1.5 -6.4 Pheromone shutdown protein compare
Xcc-8004.601.1 -1.5 -5.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.574.1 -1.5 -5.8 Di-/tripeptide transporter compare
Xcc-8004.3576.1 -1.5 -5.5 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.3815.1 -1.5 -2.9 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.318.1 -1.4 -4.8 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.1495.1 -1.4 -3.1 FIG01212489: hypothetical protein compare
Xcc-8004.4046.1 -1.4 -6.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1196.1 -1.4 -5.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.2337.1 -1.4 -3.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.5407.1 -1.4 -2.3 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.1568.1 -1.4 -1.6 Glycine cleavage system H protein compare
Xcc-8004.2412.1 -1.4 -8.3 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.3479.1 -1.4 -1.6 aklaviketone reductase compare
Xcc-8004.3954.1 -1.4 -4.6 HflC protein compare
Xcc-8004.3676.1 -1.4 -2.6 Translation elongation factor LepA compare
Xcc-8004.93.1 -1.3 -2.7 FIG01211857: hypothetical protein compare
Xcc-8004.878.1 -1.3 -5.4 Sugar kinase compare
Xcc-8004.585.1 -1.3 -1.7 Na(+) H(+) antiporter subunit F compare
Xcc-8004.335.1 -1.3 -4.6 putative membrane protein compare
Xcc-8004.319.1 -1.3 -6.8 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.2833.1 -1.3 -2.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.4373.1 -1.3 -2.5 LppC putative lipoprotein compare
Xcc-8004.5317.1 -1.3 -0.9 FIG01210332: hypothetical protein compare
Xcc-8004.4168.1 -1.2 -2.9 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.3981.1 -1.2 -3.8 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.2011.1 -1.2 -1.4 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.689.1 -1.2 -1.4 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.1858.1 -1.2 -1.0 FIG01211170: hypothetical protein compare
Xcc-8004.3686.1 -1.2 -5.0 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.1436.1 -1.2 -1.3 Holliday junction DNA helicase RuvA compare
Xcc-8004.1685.1 -1.2 -1.0 hypothetical protein compare
Xcc-8004.3898.1 -1.2 -0.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.234.1 -1.2 -6.7 cardiolipin synthase compare
Xcc-8004.3817.1 -1.2 -4.0 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.3103.1 -1.2 -1.6 hypothetical protein compare
Xcc-8004.494.1 -1.2 -4.7 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.3775.1 -1.2 -2.9 FIG001154: CcsA-related protein compare
Xcc-8004.1959.1 -1.2 -1.3 hypothetical protein compare
Xcc-8004.1486.1 -1.2 -1.7 Coenzyme PQQ synthesis protein D compare
Xcc-8004.3321.1 -1.2 -1.5 FIG01209847: hypothetical protein compare
Xcc-8004.3431.1 -1.1 -1.8 DNA repair protein RecN compare
Xcc-8004.764.1 -1.1 -1.6 FIG01213873: hypothetical protein compare
Xcc-8004.5114.1 -1.1 -4.1 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.5343.1 -1.1 -4.4 hypothetical protein compare
Xcc-8004.410.1 -1.1 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4112.1 -1.1 -2.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3955.1 -1.1 -3.2 HflK protein compare
Xcc-8004.5098.1 -1.1 -1.9 hypothetical protein compare
Xcc-8004.2059.1 -1.1 -1.8 hypothetical protein compare
Xcc-8004.3647.1 -1.1 -2.9 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.2411.1 -1.1 -4.2 Small-conductance mechanosensitive channel compare
Xcc-8004.629.1 -1.1 -2.2 hypothetical protein compare
Xcc-8004.4035.1 -1.1 -2.8 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) compare
Xcc-8004.934.1 -1.1 -1.1 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.4824.1 -1.0 -4.8 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.3320.1 -1.0 -0.9 FIG01209869: hypothetical protein compare
Xcc-8004.1841.1 -1.0 -2.0 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.287.1 -1.0 -2.6 Haloalkane dehalogenase-like protein compare
Xcc-8004.1718.1 -1.0 -1.2 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.1911.1 -1.0 -2.2 hypothetical protein compare
Xcc-8004.4526.1 -1.0 -4.7 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.280.1 -1.0 -3.2 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.4633.1 -1.0 -1.6 FIG01210488: hypothetical protein compare
Xcc-8004.3674.1 -1.0 -1.8 FIG01209931: hypothetical protein compare
Xcc-8004.1880.1 -1.0 -5.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.3426.1 -1.0 -3.7 Chaperone protein DnaJ compare
Xcc-8004.5202.1 -1.0 -2.5 Twin-arginine translocation protein TatC compare
Xcc-8004.1961.1 -1.0 -1.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.983.1 -1.0 -1.5 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.5333.1 -1.0 -2.8 Transposase (class I) compare
Xcc-8004.4948.1 -1.0 -1.7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.1601.1 -1.0 -4.5 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.3794.1 -1.0 -0.9 Mobile element protein compare
Xcc-8004.2335.1 -1.0 -2.9 Transport ATP-binding protein CydC compare
Xcc-8004.5130.1 -1.0 -2.6 hypothetical protein compare
Xcc-8004.2565.1 -1.0 -1.8 hypothetical protein compare
Xcc-8004.3982.1 -1.0 -4.2 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.1562.1 -1.0 -1.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.1621.1 -1.0 -2.3 FIG01213569: hypothetical protein compare
Xcc-8004.3759.1 -1.0 -1.9 hypothetical protein compare
Xcc-8004.869.1 -1.0 -2.2 Methanol dehydrogenase large subunit protein (EC 1.1.99.8) compare
Xcc-8004.4529.1 -1.0 -0.9 FIG01210979: hypothetical protein compare
Xcc-8004.4693.1 -1.0 -1.6 hypothetical protein compare
Xcc-8004.2169.1 -0.9 -1.3 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1400.1 -0.9 -1.6 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.1955.1 -0.9 -3.7 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1747.1 -0.9 -1.9 FIG01210249: hypothetical protein compare
Xcc-8004.5253.1 -0.9 -0.8 hypothetical protein compare
Xcc-8004.3816.1 -0.9 -3.7 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.4596.1 -0.9 -5.3 hypothetical protein compare
Xcc-8004.957.1 -0.9 -1.9 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.3855.1 -0.9 -3.9 FIG01209965: hypothetical protein compare
Xcc-8004.4954.1 -0.9 -4.9 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.1437.1 -0.9 -3.3 Kup system potassium uptake protein compare
Xcc-8004.3655.1 -0.9 -1.1 FIG01210025: hypothetical protein compare
Xcc-8004.4839.1 -0.9 -3.0 FIG01211359: hypothetical protein compare
Xcc-8004.1364.1 -0.9 -2.8 FIG01209970: hypothetical protein compare
Xcc-8004.4752.1 -0.9 -1.5 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.340.1 -0.9 -1.3 Organic hydroperoxide resistance protein compare
Xcc-8004.4777.1 -0.9 -4.8 ATP-dependent RNA helicase RhlB compare
Xcc-8004.1058.1 -0.9 -1.5 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.3036.1 -0.9 -1.5 L-Proline/Glycine betaine transporter ProP compare
Xcc-8004.1126.1 -0.9 -1.5 Electron transfer protein azurin I compare
Xcc-8004.459.1 -0.9 -1.3 4-hydroxybenzoate transporter compare
Xcc-8004.350.1 -0.9 -1.3 hypothetical protein compare
Xcc-8004.914.1 -0.9 -3.8 tail-specific protease compare
Xcc-8004.619.1 -0.9 -2.5 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) compare
Xcc-8004.649.1 -0.9 -0.8 hypothetical protein compare
Xcc-8004.4699.1 -0.9 -0.9 Flagellar motor protein compare
Xcc-8004.5368.1 -0.9 -1.8 FIG01210868: hypothetical protein compare
Xcc-8004.118.1 -0.9 -3.3 FIG037995: Hypothetical protein compare
Xcc-8004.999.1 -0.9 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1027.1 -0.9 -1.0 Two-component system sensor protein compare
Xcc-8004.2168.1 -0.9 -2.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.1677.1 -0.9 -2.3 FIG01209993: hypothetical protein compare
Xcc-8004.2449.1 -0.8 -2.4 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.5135.1 -0.8 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.4457.1 -0.8 -1.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.1086.1 -0.8 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2569.1 -0.8 -1.3 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.4001.1 -0.8 -1.1 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.3324.1 -0.8 -2.4 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.5369.1 -0.8 -2.9 Lipoprotein compare
Xcc-8004.3948.1 -0.8 -2.8 FIG01211207: hypothetical protein compare
Xcc-8004.1859.1 -0.8 -1.6 Transcriptional regulator compare
Xcc-8004.3402.1 -0.8 -1.8 FIG01210246: hypothetical protein compare
Xcc-8004.3310.1 -0.8 -2.5 Chromosome partition protein smc compare
Xcc-8004.471.1 -0.8 -1.8 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.3783.1 -0.8 -3.5 Two-component system sensor protein compare
Xcc-8004.3896.1 -0.8 -3.5 hypothetical protein compare
Xcc-8004.4836.1 -0.8 -2.9 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.2910.1 -0.8 -2.7 Regulatory protein, RpfE type compare
Xcc-8004.5244.1 -0.8 -2.7 FIG01209927: hypothetical protein compare
Xcc-8004.1328.1 -0.8 -1.0 FIG01210090: hypothetical protein compare
Xcc-8004.1228.1 -0.8 -3.8 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.3918.1 -0.8 -3.5 Thioredoxin reductase (EC 1.8.1.9) compare
Xcc-8004.3726.1 -0.8 -0.8 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.3792.1 -0.8 -0.7 Mobile element protein compare
Xcc-8004.143.1 -0.8 -1.8 hypothetical protein compare
Xcc-8004.4292.1 -0.8 -1.2 Taurine transport ATP-binding protein TauB compare
Xcc-8004.1953.1 -0.8 -3.0 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Xcc-8004.1879.1 -0.8 -3.3 Septum formation protein Maf compare
Xcc-8004.321.1 -0.8 -4.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.1623.1 -0.8 -2.6 probable lipoprotein compare
Xcc-8004.4250.1 -0.8 -1.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.4568.1 -0.8 -1.0 FIG01210028: hypothetical protein compare
Xcc-8004.1306.1 -0.8 -2.4 hypothetical protein compare
Xcc-8004.4507.1 -0.7 -3.1 Glycosyltransferase compare
Xcc-8004.4715.1 -0.7 -2.4 FIG00353010: hypothetical protein compare
Xcc-8004.951.1 -0.7 -0.9 General secretion pathway protein M compare
Xcc-8004.2635.1 -0.7 -2.1 phage-related protein compare
Xcc-8004.704.1 -0.7 -2.2 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) compare
Xcc-8004.1454.1 -0.7 -1.5 hypothetical protein compare
Xcc-8004.4501.1 -0.7 -3.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.4231.1 -0.7 -0.7 two-component system regulatory protein compare
Xcc-8004.4503.1 -0.7 -2.4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.4534.1 -0.7 -2.4 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Xcc-8004.4254.1 -0.7 -2.0 Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) compare
Xcc-8004.5366.1 -0.7 -5.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.2228.1 -0.7 -2.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.2890.1 -0.7 -2.5 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction control experiments