Experiment set7IT066 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4945.1 -4.6 -1.3 FIG01210349: hypothetical protein compare
Xcc-8004.4039.1 -3.2 -3.3 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2011.1 -3.1 -2.3 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.1436.1 -3.0 -2.1 Holliday junction DNA helicase RuvA compare
Xcc-8004.2182.1 -3.0 -14.4 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2217.1 -2.6 -3.6 FIG01209779: hypothetical protein compare
Xcc-8004.127.1 -2.6 -1.8 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4620.1 -2.6 -8.2 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1124.1 -2.6 -2.3 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.4884.1 -2.5 -1.8 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.3954.1 -2.5 -5.7 HflC protein compare
Xcc-8004.4732.1 -2.5 -1.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1495.1 -2.4 -2.5 FIG01212489: hypothetical protein compare
Xcc-8004.3752.1 -2.4 -2.0 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.4000.1 -2.4 -2.6 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.1359.1 -2.3 -6.3 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.1372.1 -2.3 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2169.1 -2.3 -3.2 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.2922.1 -2.3 -2.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.3903.1 -2.2 -3.4 Mlr6856 protein compare
Xcc-8004.1241.1 -2.2 -5.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3054.1 -2.2 -1.6 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.2346.1 -2.1 -2.5 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.1615.1 -2.1 -1.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1236.1 -2.1 -5.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.171.1 -2.1 -1.2 hypothetical protein compare
Xcc-8004.5133.1 -2.1 -1.7 FIG01212313: hypothetical protein compare
Xcc-8004.585.1 -2.1 -1.8 Na(+) H(+) antiporter subunit F compare
Xcc-8004.4046.1 -2.0 -8.5 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.130.1 -2.0 -4.9 hypothetical protein compare
Xcc-8004.5317.1 -2.0 -1.9 FIG01210332: hypothetical protein compare
Xcc-8004.3979.1 -1.9 -6.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.589.1 -1.9 -1.9 hypothetical protein compare
Xcc-8004.3473.1 -1.9 -1.6 FIG01213437: hypothetical protein compare
Xcc-8004.1244.1 -1.9 -6.3 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.3792.1 -1.9 -1.3 Mobile element protein compare
Xcc-8004.502.1 -1.9 -2.4 Biotin synthesis protein BioH compare
Xcc-8004.2923.1 -1.8 -6.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.27.1 -1.8 -1.5 hypothetical protein compare
Xcc-8004.1727.1 -1.8 -2.6 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.3310.1 -1.7 -4.1 Chromosome partition protein smc compare
Xcc-8004.1266.1 -1.7 -3.2 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.461.1 -1.7 -2.4 Transcriptional regulator, MarR family compare
Xcc-8004.659.1 -1.7 -3.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.337.1 -1.6 -2.8 ATPase, AFG1 family compare
Xcc-8004.1196.1 -1.6 -6.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.778.1 -1.5 -2.0 FIG01214273: hypothetical protein compare
Xcc-8004.340.1 -1.5 -2.3 Organic hydroperoxide resistance protein compare
Xcc-8004.3590.1 -1.5 -1.6 FIG01211013: hypothetical protein compare
Xcc-8004.4001.1 -1.5 -1.8 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.4810.1 -1.5 -5.0 hypothetical protein compare
Xcc-8004.2372.1 -1.5 -5.7 Pheromone shutdown protein compare
Xcc-8004.456.1 -1.5 -1.0 carbonic anhydrase, family 3 compare
Xcc-8004.4368.1 -1.5 -2.3 FIG01209977: hypothetical protein compare
Xcc-8004.574.1 -1.5 -4.6 Di-/tripeptide transporter compare
Xcc-8004.5185.1 -1.5 -1.2 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.2012.1 -1.5 -5.2 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.3395.1 -1.4 -2.2 Transcriptional regulator, GntR family compare
Xcc-8004.1822.1 -1.4 -2.6 Transcriptional regulator, MarR family compare
Xcc-8004.2055.1 -1.4 -1.5 Mobile element protein compare
Xcc-8004.4275.1 -1.4 -3.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.4534.1 -1.4 -3.0 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Xcc-8004.3955.1 -1.4 -3.7 HflK protein compare
Xcc-8004.1504.1 -1.4 -1.4 type IV pili signal transduction protein PilI compare
Xcc-8004.3742.1 -1.4 -2.2 Type III effector compare
Xcc-8004.1763.1 -1.4 -1.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.4185.1 -1.4 -2.1 Acylphosphate phosphohydrolase (EC 3.6.1.7), putative compare
Xcc-8004.3120.1 -1.3 -1.7 RNA-binding protein Hfq compare
Xcc-8004.1514.1 -1.3 -2.4 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.3703.1 -1.3 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4836.1 -1.3 -2.9 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.623.1 -1.3 -1.6 Phosphoserine phosphatase compare
Xcc-8004.5019.1 -1.3 -1.2 FIG01210147: hypothetical protein compare
Xcc-8004.3576.1 -1.3 -4.1 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.165.1 -1.3 -0.7 hypothetical protein compare
Xcc-8004.4373.1 -1.3 -2.5 LppC putative lipoprotein compare
Xcc-8004.4290.1 -1.3 -3.2 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Xcc-8004.3165.1 -1.3 -2.3 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.934.1 -1.3 -1.3 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.4529.1 -1.3 -0.8 FIG01210979: hypothetical protein compare
Xcc-8004.878.1 -1.3 -4.3 Sugar kinase compare
Xcc-8004.3976.1 -1.2 -1.4 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2358.1 -1.2 -4.7 Segregation and condensation protein A compare
Xcc-8004.2259.1 -1.2 -3.5 PhbF compare
Xcc-8004.4313.1 -1.2 -2.0 hypothetical protein compare
Xcc-8004.1871.1 -1.2 -3.3 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.1138.1 -1.2 -3.4 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.1409.1 -1.2 -2.2 Cation:proton antiporter compare
Xcc-8004.914.1 -1.2 -4.1 tail-specific protease compare
Xcc-8004.3783.1 -1.2 -3.4 Two-component system sensor protein compare
Xcc-8004.5252.1 -1.2 -4.0 FIG01210658: hypothetical protein compare
Xcc-8004.649.1 -1.2 -1.2 hypothetical protein compare
Xcc-8004.2074.1 -1.2 -2.6 Transcriptional regulator, MerR family compare
Xcc-8004.1365.1 -1.2 -0.9 FIG01211058: hypothetical protein compare
Xcc-8004.4477.1 -1.2 -1.3 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.3715.1 -1.2 -1.7 FIG01212258: hypothetical protein compare
Xcc-8004.3426.1 -1.2 -3.9 Chaperone protein DnaJ compare
Xcc-8004.5280.1 -1.2 -2.3 hypothetical protein compare
Xcc-8004.2646.1 -1.2 -1.7 hypothetical protein compare
Xcc-8004.3733.1 -1.2 -1.5 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Xcc-8004.3230.1 -1.1 -2.1 Phage DNA invertase compare
Xcc-8004.4510.1 -1.1 -1.0 ATP binding component of ABC-transporter compare
Xcc-8004.601.1 -1.1 -4.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1512.1 -1.1 -1.4 RNA polymerase sigma-70 factor compare
Xcc-8004.1329.1 -1.1 -2.6 Virulence regulator compare
Xcc-8004.1536.1 -1.1 -2.7 Virulence protein compare
Xcc-8004.2662.1 -1.1 -3.0 probable membrane protein YPO3302 compare
Xcc-8004.4824.1 -1.1 -4.6 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.565.1 -1.1 -3.9 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.3014.1 -1.1 -3.3 putative ATPase, AAA+ family protein compare
Xcc-8004.4200.1 -1.1 -1.5 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.5324.1 -1.1 -1.4 Mobile element protein compare
Xcc-8004.4457.1 -1.1 -2.7 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.5051.1 -1.1 -1.9 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Xcc-8004.957.1 -1.1 -2.2 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.704.1 -1.1 -1.7 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) compare
Xcc-8004.2337.1 -1.1 -2.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.322.1 -1.1 -1.8 Predicted transcriptional regulator LiuX of leucine degradation pathway, AcrR family compare
Xcc-8004.5125.1 -1.1 -2.8 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.898.1 -1.1 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3942.1 -1.0 -1.5 RelE/StbE replicon stabilization toxin compare
Xcc-8004.3281.1 -1.0 -2.8 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.1308.1 -1.0 -1.8 FIG01211990: hypothetical protein compare
Xcc-8004.4833.1 -1.0 -1.3 FIG01111678: hypothetical protein compare
Xcc-8004.3013.1 -1.0 -1.9 hypothetical protein compare
Xcc-8004.3246.1 -1.0 -2.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4024.1 -1.0 -4.2 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.5182.1 -1.0 -2.5 hypothetical protein compare
Xcc-8004.1374.1 -1.0 -1.8 Lipoprotein, putative compare
Xcc-8004.944.1 -1.0 -1.8 General secretion pathway protein F compare
Xcc-8004.3108.1 -1.0 -2.2 Regulatory protein RecX compare
Xcc-8004.319.1 -1.0 -5.1 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.2565.1 -1.0 -2.2 hypothetical protein compare
Xcc-8004.1134.1 -1.0 -2.7 Protein sirB1 compare
Xcc-8004.4301.1 -1.0 -2.6 Nucleoside permease NupC compare
Xcc-8004.545.1 -1.0 -1.2 Nucleoside-diphosphate-sugar epimerases compare
Xcc-8004.3759.1 -1.0 -1.6 hypothetical protein compare
Xcc-8004.4503.1 -1.0 -2.5 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.4322.1 -1.0 -0.9 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.5380.1 -1.0 -3.7 FIG01212194: hypothetical protein compare
Xcc-8004.5368.1 -1.0 -1.9 FIG01210868: hypothetical protein compare
Xcc-8004.4615.1 -1.0 -2.6 FIG01210966: hypothetical protein compare
Xcc-8004.3816.1 -1.0 -3.5 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.2559.1 -1.0 -1.2 hypothetical protein compare
Xcc-8004.3492.1 -0.9 -0.8 FIG01211425: hypothetical protein compare
Xcc-8004.1328.1 -0.9 -1.1 FIG01210090: hypothetical protein compare
Xcc-8004.3174.1 -0.9 -2.4 Aminotransferase compare
Xcc-8004.4839.1 -0.9 -2.2 FIG01211359: hypothetical protein compare
Xcc-8004.3815.1 -0.9 -1.9 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.769.1 -0.9 -3.0 Lactoylglutathione lyase and related lyases compare
Xcc-8004.4168.1 -0.9 -2.3 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.93.1 -0.9 -1.6 FIG01211857: hypothetical protein compare
Xcc-8004.318.1 -0.9 -3.2 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.2924.1 -0.9 -2.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.1200.1 -0.9 -0.9 hypothetical protein compare
Xcc-8004.5189.1 -0.9 -0.6 FIG01212821: hypothetical protein compare
Xcc-8004.5166.1 -0.9 -1.2 hypothetical protein compare
Xcc-8004.99.1 -0.9 -0.9 FIG01211055: hypothetical protein compare
Xcc-8004.3721.1 -0.9 -0.9 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.3344.1 -0.9 -3.0 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Xcc-8004.4777.1 -0.9 -4.8 ATP-dependent RNA helicase RhlB compare
Xcc-8004.3855.1 -0.9 -3.1 FIG01209965: hypothetical protein compare
Xcc-8004.3346.1 -0.9 -2.0 hypothetical protein compare
Xcc-8004.2529.1 -0.9 -1.7 FIG01210734: hypothetical protein compare
Xcc-8004.3049.1 -0.9 -3.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.234.1 -0.9 -4.6 cardiolipin synthase compare
Xcc-8004.571.1 -0.9 -4.8 Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) compare
Xcc-8004.837.1 -0.9 -0.9 FIG01210690: hypothetical protein compare
Xcc-8004.2935.1 -0.9 -5.9 Amino acid transporters compare
Xcc-8004.694.1 -0.8 -1.7 hypothetical protein compare
Xcc-8004.1434.1 -0.8 -0.9 FIG000859: hypothetical protein YebC compare
Xcc-8004.738.1 -0.8 -1.3 Malonate decarboxylase gamma subunit compare
Xcc-8004.321.1 -0.8 -5.2 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.645.1 -0.8 -0.9 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.298.1 -0.8 -2.2 Hypothetical protein YaeJ with similarity to translation release factor compare
Xcc-8004.3647.1 -0.8 -2.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.1720.1 -0.8 -1.2 UPF0301 protein YqgE compare
Xcc-8004.410.1 -0.8 -0.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4239.1 -0.8 -2.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.788.1 -0.8 -1.6 Serine peptidase compare
Xcc-8004.1790.1 -0.8 -1.2 Zinc uptake regulation protein ZUR compare
Xcc-8004.323.1 -0.8 -1.3 FIG01210738: hypothetical protein compare
Xcc-8004.4568.1 -0.8 -1.0 FIG01210028: hypothetical protein compare
Xcc-8004.2649.1 -0.8 -2.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4491.1 -0.8 -2.2 Glycosyltransferase compare
Xcc-8004.4553.1 -0.8 -2.2 FIG01211682: hypothetical protein compare
Xcc-8004.2652.1 -0.8 -1.3 response regulator compare
Xcc-8004.494.1 -0.8 -3.6 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.3676.1 -0.8 -1.3 Translation elongation factor LepA compare
Xcc-8004.335.1 -0.8 -2.9 putative membrane protein compare
Xcc-8004.4446.1 -0.8 -2.6 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.3479.1 -0.8 -0.8 aklaviketone reductase compare
Xcc-8004.3320.1 -0.8 -0.8 FIG01209869: hypothetical protein compare
Xcc-8004.3981.1 -0.8 -2.3 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.5118.1 -0.8 -1.9 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) compare
Xcc-8004.3687.1 -0.8 -2.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.1880.1 -0.8 -3.7 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.3689.1 -0.8 -3.5 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Xcc-8004.4170.1 -0.8 -1.0 LSU ribosomal protein L25p compare
Xcc-8004.3980.1 -0.8 -2.9 2-methylcitrate synthase (EC 2.3.3.5) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction control experiments