Experiment set7IT066 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM Glycine

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS06715 +2.4 15.7 cache domain-containing protein compare
MMP_RS03390 +2.2 13.8 malate dehydrogenase compare
MMP_RS07765 +2.1 11.2 sodium:alanine symporter family protein compare
MMP_RS06720 +2.0 10.7 response regulator transcription factor compare
MMP_RS08320 +1.6 5.0 molybdopterin molybdotransferase MoeA compare
MMP_RS04885 +1.5 9.9 sulfite exporter TauE/SafE family protein compare
MMP_RS02290 +1.5 9.1 MBL fold metallo-hydrolase compare
MMP_RS02885 +1.4 8.0 molybdopterin biosynthesis protein compare
MMP_RS00325 +1.3 2.8 RNA-binding protein compare
MMP_RS03340 +1.3 1.2 ABC transporter ATP-binding protein compare
MMP_RS05975 +1.3 2.4 hypothetical protein compare
MMP_RS00185 +1.2 8.4 potassium channel protein compare
MMP_RS08760 +1.2 3.8 hypothetical protein compare
MMP_RS02045 +1.0 1.9 tRNA-Met compare
MMP_RS00395 +1.0 1.6 MGMT family protein compare
MMP_RS01650 +1.0 1.0 sulfurtransferase TusA family protein compare
MMP_RS03065 +0.9 1.6 AzlC family ABC transporter permease compare
MMP_RS08310 +0.9 2.0 TMEM165/GDT1 family protein compare
MMP_RS00855 +0.9 2.8 DUF367 family protein compare
MMP_RS01570 +0.9 1.6 hypothetical protein compare
MMP_RS00660 +0.9 5.8 alkaline phosphatase family protein compare
MMP_RS05695 +0.9 5.6 phospholipase D-like domain-containing protein compare
MMP_RS06870 +0.8 3.9 DedA family protein compare
MMP_RS06860 +0.8 1.8 4Fe-4S binding protein compare
MMP_RS01675 +0.8 1.6 hypothetical protein compare
MMP_RS07770 +0.8 3.6 alanine racemase compare
MMP_RS08275 +0.8 3.9 hypothetical protein compare
MMP_RS07815 +0.8 1.1 DUF2120 domain-containing protein compare
MMP_RS08390 +0.8 1.7 DUF5400 domain-containing protein compare
MMP_RS01630 +0.8 4.0 N-glycosylase/DNA lyase compare
MMP_RS05110 +0.7 3.8 16S ribosomal RNA methyltransferase A compare
MMP_RS07840 +0.7 2.4 ribonuclease III compare
MMP_RS01055 +0.7 2.5 hypothetical protein compare
MMP_RS06575 +0.7 1.8 fluoride efflux transporter CrcB compare
MMP_RS08670 +0.7 2.6 metallophosphoesterase compare
MMP_RS07925 +0.7 3.8 haloacid dehalogenase compare
MMP_RS00430 +0.7 1.5 hypothetical protein compare
MMP_RS08665 +0.7 5.2 hypothetical protein compare
MMP_RS07805 +0.7 3.3 ABC transporter permease compare
MMP_RS00335 +0.7 2.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS08280 +0.7 1.7 proteasome assembly chaperone family protein compare
MMP_RS01135 +0.7 4.5 molybdate ABC transporter substrate-binding protein compare
MMP_RS00155 +0.7 2.8 heavy metal-binding domain-containing protein compare
MMP_RS04015 +0.7 2.1 hypothetical protein compare
MMP_RS08555 +0.7 1.9 hypothetical protein compare
MMP_RS00990 +0.6 1.5 hypothetical protein compare
MMP_RS08700 +0.6 3.4 hypothetical protein compare
MMP_RS06540 +0.6 1.7 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS04145 +0.6 1.2 hypothetical protein compare
MMP_RS00085 +0.6 3.7 DNA cytosine methyltransferase compare
MMP_RS01550 +0.6 3.0 DUF1624 domain-containing protein compare
MMP_RS01525 +0.6 1.2 nucleoside-diphosphate kinase compare
MMP_RS01320 +0.6 2.1 hypothetical protein compare
MMP_RS06685 +0.6 3.3 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07625 +0.6 1.1 cobalt ECF transporter T component CbiQ compare
MMP_RS08075 +0.6 2.0 DUF749 domain-containing protein compare
MMP_RS02985 +0.6 1.3 hypothetical protein compare
MMP_RS07960 +0.6 3.5 sugar phosphate isomerase/epimerase compare
MMP_RS01785 +0.6 2.7 hypothetical protein compare
MMP_RS07560 +0.6 2.1 prefoldin subunit alpha compare
MMP_RS00665 +0.6 2.0 hypothetical protein compare
MMP_RS00655 +0.6 1.7 hypothetical protein compare
MMP_RS06325 +0.5 0.9 hypothetical protein compare
MMP_RS06910 +0.5 3.1 RlmF-related methyltransferase compare
MMP_RS02300 +0.5 2.7 NAD(P)H-dependent oxidoreductase compare
MMP_RS00345 +0.5 1.9 DUF2666 domain-containing protein compare
MMP_RS08410 +0.5 2.5 DUF169 domain-containing protein compare
MMP_RS07125 +0.5 1.9 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00950 +0.5 2.4 site-2 protease family protein compare
MMP_RS08285 +0.5 2.1 serine/threonine protein kinase compare
MMP_RS02740 +0.5 2.3 hypothetical protein compare
MMP_RS04165 +0.5 2.1 TetR/AcrR family transcriptional regulator compare
MMP_RS07425 +0.5 2.5 GTP-binding protein compare
MMP_RS05715 +0.5 2.5 hypothetical protein compare
MMP_RS01095 +0.5 1.7 iron ABC transporter permease compare
MMP_RS06345 +0.5 3.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS07620 +0.5 1.2 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS08640 +0.5 2.9 TIM barrel protein compare
MMP_RS03150 +0.5 2.5 phosphoglycerate mutase compare
MMP_RS02805 +0.5 0.8 HEPN domain-containing protein compare
MMP_RS01495 +0.5 3.0 TraB/GumN family protein compare
MMP_RS05985 +0.5 0.9 hypothetical protein compare
MMP_RS08675 +0.5 1.5 class III signal peptide-containing protein compare
MMP_RS08930 +0.5 0.7 hypothetical protein compare
MMP_RS01260 +0.5 1.4 HDIG domain-containing protein compare
MMP_RS08130 +0.5 3.1 IGHMBP2 family helicase compare
MMP_RS06990 +0.4 1.8 CatB-related O-acetyltransferase compare
MMP_RS06300 +0.4 2.3 ABC transporter substrate-binding protein compare
MMP_RS08160 +0.4 1.6 EamA family transporter compare
MMP_RS08265 +0.4 1.6 rubrerythrin compare
MMP_RS05675 +0.4 1.2 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS01200 +0.4 1.6 hypothetical protein compare
MMP_RS01635 +0.4 2.0 thiamine pyrophosphate-dependent enzyme compare
MMP_RS00290 +0.4 1.8 hypothetical protein compare
MMP_RS03840 +0.4 1.3 hypothetical protein compare
MMP_RS08070 +0.4 1.8 DUF2096 domain-containing protein compare
MMP_RS00390 +0.4 2.4 ammonium transporter compare
MMP_RS01280 +0.4 2.9 DUF515 domain-containing protein compare
MMP_RS00235 +0.4 2.1 HDIG domain-containing protein compare
MMP_RS01120 +0.4 1.8 permease compare
MMP_RS08235 +0.4 1.7 hypothetical protein compare
MMP_RS03320 +0.4 1.3 metal-dependent transcriptional regulator compare
MMP_RS05800 +0.4 2.0 B12-binding domain-containing radical SAM protein compare
MMP_RS02310 +0.4 0.7 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS02705 +0.4 1.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03785 +0.4 1.6 cupin domain-containing protein compare
MMP_RS00105 +0.4 2.0 hypothetical protein compare
MMP_RS04205 +0.4 2.2 carboxymuconolactone decarboxylase family protein compare
MMP_RS08990 +0.4 1.8 hypothetical protein compare
MMP_RS07915 +0.4 1.5 DUF4870 domain-containing protein compare
MMP_RS00705 +0.4 0.8 hypothetical protein compare
MMP_RS00450 +0.4 0.6 4Fe-4S binding protein compare
MMP_RS08485 +0.4 1.9 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS02605 +0.4 0.4 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS08770 +0.4 1.8 hypothetical protein compare
MMP_RS00375 +0.4 1.8 ammonium transporter compare
MMP_RS05155 +0.4 1.9 hypothetical protein compare
MMP_RS08445 +0.4 1.0 DUF2099 family protein compare
MMP_RS01660 +0.4 0.9 hypothetical protein compare
MMP_RS00130 +0.4 0.5 nickel-responsive transcriptional regulator NikR compare
MMP_RS06660 +0.4 2.0 glycosyltransferase family 4 protein compare
MMP_RS05780 +0.4 2.1 multidrug resistance efflux transporter family protein compare
MMP_RS05970 +0.4 1.3 class II SORL domain-containing protein compare
MMP_RS07800 +0.4 2.1 ATP-binding cassette domain-containing protein compare
MMP_RS00565 +0.4 1.5 CBS domain-containing protein compare
MMP_RS00240 +0.4 2.5 type II secretion system F family protein compare
MMP_RS00385 +0.4 1.6 P-II family nitrogen regulator compare
MMP_RS07550 +0.4 2.5 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS08480 +0.4 2.2 molybdate ABC transporter substrate-binding protein compare
MMP_RS05355 +0.4 0.4 hypothetical protein compare
MMP_RS06215 +0.4 0.8 30S ribosomal protein S6e compare
MMP_RS03625 +0.4 1.6 cell wall-binding protein compare
MMP_RS07970 +0.4 1.2 hypothetical protein compare
MMP_RS08080 +0.4 1.9 YchF/TatD family DNA exonuclease compare
MMP_RS09030 +0.4 1.3 hypothetical protein compare
MMP_RS05315 +0.4 0.4 hypothetical protein compare
MMP_RS06500 +0.3 2.0 ATP-binding protein compare
MMP_RS02320 +0.3 2.6 glutamate-cysteine ligase family protein compare
MMP_RS06570 +0.3 1.3 DUF190 domain-containing protein compare
MMP_RS03965 +0.3 0.8 hypothetical protein compare
MMP_RS02380 +0.3 1.5 ATP-binding protein compare
MMP_RS06075 +0.3 1.7 class I SAM-dependent methyltransferase compare
MMP_RS05795 +0.3 1.1 redox-regulated ATPase YchF compare
MMP_RS02770 +0.3 1.1 hypothetical protein compare
MMP_RS03675 +0.3 2.3 RimK family alpha-L-glutamate ligase compare
MMP_RS05090 +0.3 1.7 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS06545 +0.3 1.1 ferredoxin family protein compare
MMP_RS00400 +0.3 1.2 tributyrin esterase compare
MMP_RS07650 +0.3 2.4 TldD/PmbA family protein compare
MMP_RS01065 +0.3 2.1 alpha/beta hydrolase compare
MMP_RS02385 +0.3 1.4 ATP-binding protein compare
MMP_RS09065 +0.3 1.8 hypothetical protein compare
MMP_RS00195 +0.3 2.7 DUF4013 domain-containing protein compare
MMP_RS04060 +0.3 1.2 hypothetical protein compare
MMP_RS03890 +0.3 1.4 DUF2540 domain-containing protein compare
MMP_RS02390 +0.3 1.6 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS03480 +0.3 2.2 SulP family inorganic anion transporter compare
MMP_RS00245 +0.3 2.4 type II secretion system F family protein compare
MMP_RS06665 +0.3 1.5 glycogen/starch synthase compare
MMP_RS02910 +0.3 1.2 ABC transporter substrate-binding protein compare
MMP_RS06065 +0.3 2.3 iron ABC transporter substrate-binding protein compare
MMP_RS06650 +0.3 1.4 glycoside hydrolase family 57 protein compare
MMP_RS01620 +0.3 0.9 hypothetical protein compare
MMP_RS00795 +0.3 1.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS02475 +0.3 0.8 hypothetical protein compare
MMP_RS01645 +0.3 1.2 SWIM zinc finger family protein compare
MMP_RS05140 +0.3 0.7 helix-turn-helix transcriptional regulator compare
MMP_RS02810 +0.3 1.6 hypothetical protein compare
MMP_RS08380 +0.3 1.3 phosphatase PAP2 family protein compare
MMP_RS04260 +0.3 1.0 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS00145 +0.3 1.3 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS02375 +0.3 1.6 hypothetical protein compare
MMP_RS05995 +0.3 1.8 FprA family A-type flavoprotein compare
MMP_RS05435 +0.3 1.9 5'/3'-nucleotidase SurE compare
MMP_RS05835 +0.3 0.2 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS08325 +0.3 1.5 hypothetical protein compare
MMP_RS08200 +0.3 1.8 archaeosine synthase subunit alpha compare
MMP_RS01290 +0.3 1.5 class III signal peptide-containing protein compare
MMP_RS08430 +0.3 1.5 HAD family hydrolase compare
MMP_RS00435 +0.3 1.8 CPBP family intramembrane metalloprotease compare
MMP_RS08260 +0.3 1.3 DUF99 family protein compare
MMP_RS00570 +0.3 0.7 protein-L-isoaspartate O-methyltransferase compare
MMP_RS06770 +0.3 1.4 DHH family phosphoesterase compare
MMP_RS02890 +0.3 1.4 TIGR00296 family protein compare
MMP_RS08775 +0.3 0.7 methanogenesis marker 9 domain-containing protein compare
MMP_RS02720 +0.3 0.8 molybdate ABC transporter substrate-binding protein compare
MMP_RS08175 +0.3 1.8 7-cyano-7-deazaguanine synthase compare
MMP_RS00295 +0.3 0.7 gamma carbonic anhydrase family protein compare
MMP_RS00125 +0.3 0.4 DUF2798 domain-containing protein compare
MMP_RS05820 +0.3 1.3 RNA-binding transcriptional accessory protein compare
MMP_RS03215 +0.3 1.3 MBL fold metallo-hydrolase compare
MMP_RS08085 +0.3 1.5 hypothetical protein compare
MMP_RS01780 +0.3 1.1 TrmJ/YjtD family RNA methyltransferase compare
MMP_RS07590 +0.3 1.4 hypothetical protein compare
MMP_RS08850 +0.3 2.1 hypothetical protein compare
MMP_RS05825 +0.3 1.2 peptidyl-prolyl cis-trans isomerase compare
MMP_RS00670 +0.3 0.7 TIM barrel protein compare
MMP_RS01275 +0.3 1.3 class III signal peptide-containing protein compare
MMP_RS01250 +0.3 0.6 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS04105 +0.3 1.2 MarR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments

For nitrogen source Glycine across organisms