Experiment set7IT065 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
Xcc-8004.787.1 -4.8 -1.5 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.4039.1 -4.4 -3.1 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2182.1 -3.0 -14.3 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.1241.1 -2.9 -6.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3815.1 -2.9 -4.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.2922.1 -2.8 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1236.1 -2.8 -6.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3976.1 -2.6 -4.2 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1914.1 -2.5 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.3498.1 -2.5 -1.1 hypothetical protein compare
Xcc-8004.4620.1 -2.4 -6.9 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3792.1 -2.4 -1.5 Mobile element protein compare
Xcc-8004.1359.1 -2.4 -6.7 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3752.1 -2.4 -2.1 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.130.1 -2.3 -6.1 hypothetical protein compare
Xcc-8004.3310.1 -2.2 -4.5 Chromosome partition protein smc compare
Xcc-8004.659.1 -2.2 -3.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.1365.1 -2.2 -1.5 FIG01211058: hypothetical protein compare
Xcc-8004.1137.1 -2.2 -1.9 FIG006231: RNA-binding protein compare
Xcc-8004.1615.1 -2.1 -2.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.3979.1 -2.1 -6.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.1244.1 -2.0 -8.7 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.127.1 -2.0 -1.9 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.623.1 -2.0 -2.1 Phosphoserine phosphatase compare
Xcc-8004.3715.1 -1.9 -1.6 FIG01212258: hypothetical protein compare
Xcc-8004.4810.1 -1.9 -8.5 hypothetical protein compare
Xcc-8004.1434.1 -1.8 -1.4 FIG000859: hypothetical protein YebC compare
Xcc-8004.4322.1 -1.8 -1.3 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.4824.1 -1.8 -8.9 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1372.1 -1.8 -2.1 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.3703.1 -1.8 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3728.1 -1.8 -1.3 hypothetical protein compare
Xcc-8004.3726.1 -1.8 -1.8 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.2711.1 -1.8 -1.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.1082.1 -1.8 -2.3 FIG01211203: hypothetical protein compare
Xcc-8004.5201.1 -1.7 -2.5 FIG01211164: hypothetical protein compare
Xcc-8004.234.1 -1.7 -9.0 cardiolipin synthase compare
Xcc-8004.3451.1 -1.7 -2.3 hypothetical protein compare
Xcc-8004.4675.1 -1.7 -1.3 FIG01211280: hypothetical protein compare
Xcc-8004.4046.1 -1.7 -7.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.2923.1 -1.7 -6.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.459.1 -1.6 -2.6 4-hydroxybenzoate transporter compare
Xcc-8004.983.1 -1.6 -2.0 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.3955.1 -1.6 -4.2 HflK protein compare
Xcc-8004.2411.1 -1.6 -6.6 Small-conductance mechanosensitive channel compare
Xcc-8004.1045.1 -1.5 -3.6 hypothetical protein compare
Xcc-8004.4275.1 -1.5 -4.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.2169.1 -1.5 -2.4 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.1400.1 -1.4 -2.1 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.1961.1 -1.4 -1.9 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.957.1 -1.4 -4.1 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1162.1 -1.4 -1.8 FIG01210644: hypothetical protein compare
Xcc-8004.2958.1 -1.4 -1.1 tryptophan-rich sensory protein compare
Xcc-8004.3954.1 -1.4 -3.7 HflC protein compare
Xcc-8004.3322.1 -1.4 -1.1 FIG01211446: hypothetical protein compare
Xcc-8004.3647.1 -1.4 -3.7 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.589.1 -1.4 -1.8 hypothetical protein compare
Xcc-8004.1007.1 -1.3 -1.2 acetylxylan esterase compare
Xcc-8004.4204.1 -1.3 -1.5 FIG01210014: hypothetical protein compare
Xcc-8004.3982.1 -1.3 -4.3 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.2079.1 -1.3 -2.0 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.3395.1 -1.3 -2.6 Transcriptional regulator, GntR family compare
Xcc-8004.4200.1 -1.3 -2.1 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.3576.1 -1.3 -4.6 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1205.1 -1.3 -1.8 hypothetical protein compare
Xcc-8004.1720.1 -1.3 -1.6 UPF0301 protein YqgE compare
Xcc-8004.3686.1 -1.3 -4.8 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.601.1 -1.3 -3.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.2011.1 -1.2 -1.6 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4526.1 -1.2 -5.7 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.2672.1 -1.2 -1.3 hypothetical protein compare
Xcc-8004.914.1 -1.2 -4.7 tail-specific protease compare
Xcc-8004.2559.1 -1.2 -1.6 hypothetical protein compare
Xcc-8004.1266.1 -1.2 -2.5 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.5122.1 -1.2 -2.3 hypothetical protein compare
Xcc-8004.4884.1 -1.1 -1.4 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.4836.1 -1.1 -3.2 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.4529.1 -1.1 -0.9 FIG01210979: hypothetical protein compare
Xcc-8004.1249.1 -1.1 -3.2 Transcriptional regulator compare
Xcc-8004.2335.1 -1.1 -3.4 Transport ATP-binding protein CydC compare
Xcc-8004.2879.1 -1.1 -0.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.2337.1 -1.1 -3.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.574.1 -1.1 -4.1 Di-/tripeptide transporter compare
Xcc-8004.27.1 -1.1 -1.4 hypothetical protein compare
Xcc-8004.5253.1 -1.1 -0.9 hypothetical protein compare
Xcc-8004.3722.1 -1.1 -0.9 HrpB7 protein compare
Xcc-8004.1134.1 -1.1 -4.1 Protein sirB1 compare
Xcc-8004.3759.1 -1.1 -1.5 hypothetical protein compare
Xcc-8004.3848.1 -1.0 -1.4 FIG01212003: hypothetical protein compare
Xcc-8004.5168.1 -1.0 -0.8 hypothetical protein compare
Xcc-8004.318.1 -1.0 -4.2 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.1811.1 -1.0 -0.9 extracellular serine protease compare
Xcc-8004.290.1 -1.0 -2.9 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.2259.1 -1.0 -3.2 PhbF compare
Xcc-8004.1086.1 -1.0 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2653.1 -1.0 -2.4 hypothetical protein compare
Xcc-8004.2012.1 -1.0 -3.8 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.585.1 -1.0 -1.2 Na(+) H(+) antiporter subunit F compare
Xcc-8004.1772.1 -1.0 -2.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.500.1 -1.0 -1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Xcc-8004.1058.1 -1.0 -1.5 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.1003.1 -1.0 -1.0 FIG027190: Putative transmembrane protein compare
Xcc-8004.3855.1 -1.0 -4.1 FIG01209965: hypothetical protein compare
Xcc-8004.1891.1 -1.0 -1.0 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.456.1 -1.0 -1.0 carbonic anhydrase, family 3 compare
Xcc-8004.3898.1 -1.0 -0.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.319.1 -1.0 -5.7 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.5368.1 -1.0 -1.6 FIG01210868: hypothetical protein compare
Xcc-8004.4596.1 -1.0 -5.5 hypothetical protein compare
Xcc-8004.2652.1 -1.0 -2.0 response regulator compare
Xcc-8004.4635.1 -1.0 -1.7 hypothetical protein compare
Xcc-8004.5114.1 -1.0 -3.5 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3431.1 -1.0 -1.3 DNA repair protein RecN compare
Xcc-8004.1117.1 -1.0 -1.9 hypothetical protein compare
Xcc-8004.602.1 -1.0 -1.7 DnaJ related chaperone compare
Xcc-8004.1436.1 -1.0 -1.0 Holliday junction DNA helicase RuvA compare
Xcc-8004.1621.1 -0.9 -3.0 FIG01213569: hypothetical protein compare
Xcc-8004.1520.1 -0.9 -2.4 RebB protein compare
Xcc-8004.1776.1 -0.9 -2.1 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.1654.1 -0.9 -1.1 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.280.1 -0.9 -4.5 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.1619.1 -0.9 -1.5 PspA/IM30 family protein compare
Xcc-8004.5203.1 -0.9 -1.1 Twin-arginine translocation protein TatB compare
Xcc-8004.773.1 -0.9 -2.4 Transcriptional regulator marR family compare
Xcc-8004.1172.1 -0.9 -2.1 Transcriptional regulator compare
Xcc-8004.482.1 -0.9 -1.6 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Xcc-8004.321.1 -0.9 -6.2 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.4381.1 -0.9 -2.3 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.2646.1 -0.9 -1.2 hypothetical protein compare
Xcc-8004.2846.1 -0.9 -3.0 Mobile element protein compare
Xcc-8004.770.1 -0.9 -1.4 hypothetical protein compare
Xcc-8004.576.1 -0.9 -1.6 FIG01210281: hypothetical protein compare
Xcc-8004.3370.1 -0.9 -5.2 3'-to-5' exoribonuclease RNase R compare
Xcc-8004.2705.1 -0.9 -3.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.565.1 -0.9 -2.6 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Xcc-8004.336.1 -0.9 -3.8 Alpha/beta hydrolase compare
Xcc-8004.5051.1 -0.9 -1.2 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Xcc-8004.4908.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.1727.1 -0.9 -1.3 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.689.1 -0.9 -1.0 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.4446.1 -0.9 -3.1 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.4578.1 -0.8 -3.6 FIG048548: ATP synthase protein I2 compare
Xcc-8004.3049.1 -0.8 -3.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3212.1 -0.8 -2.6 phage-related integrase compare
Xcc-8004.3721.1 -0.8 -0.9 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.2199.1 -0.8 -1.0 Hemerythrin-like protein PA1673 compare
Xcc-8004.2565.1 -0.8 -1.3 hypothetical protein compare
Xcc-8004.2924.1 -0.8 -3.1 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.2434.1 -0.8 -2.2 hypothetical protein compare
Xcc-8004.2372.1 -0.8 -3.3 Pheromone shutdown protein compare
Xcc-8004.99.1 -0.8 -0.7 FIG01211055: hypothetical protein compare
Xcc-8004.2720.1 -0.8 -2.7 FIG01209810: hypothetical protein compare
Xcc-8004.1133.1 -0.8 -0.8 Rubredoxin compare
Xcc-8004.236.1 -0.8 -1.1 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.3365.1 -0.8 -1.7 FIG01209831: hypothetical protein compare
Xcc-8004.2930.1 -0.8 -1.1 hypothetical protein compare
Xcc-8004.5407.1 -0.8 -1.4 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.3887.1 -0.8 -2.6 hypothetical protein compare
Xcc-8004.1790.1 -0.8 -1.4 Zinc uptake regulation protein ZUR compare
Xcc-8004.2935.1 -0.8 -5.9 Amino acid transporters compare
Xcc-8004.1871.1 -0.8 -2.1 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.2929.1 -0.8 -2.8 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.955.1 -0.8 -1.7 Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family compare
Xcc-8004.4945.1 -0.8 -0.6 FIG01210349: hypothetical protein compare
Xcc-8004.4954.1 -0.8 -3.6 Peptidase B (EC 3.4.11.23) compare
Xcc-8004.5343.1 -0.8 -2.8 hypothetical protein compare
Xcc-8004.1718.1 -0.8 -1.1 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.2449.1 -0.8 -2.7 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.360.1 -0.8 -1.3 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Xcc-8004.1427.1 -0.8 -2.5 Type I antifreeze protein compare
Xcc-8004.2412.1 -0.8 -4.6 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.837.1 -0.8 -1.3 FIG01210690: hypothetical protein compare
Xcc-8004.3324.1 -0.8 -2.5 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.4948.1 -0.8 -1.3 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.384.1 -0.8 -3.1 Deoxyribonuclease TatD compare
Xcc-8004.1196.1 -0.8 -2.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.93.1 -0.8 -2.1 FIG01211857: hypothetical protein compare
Xcc-8004.2217.1 -0.8 -1.6 FIG01209779: hypothetical protein compare
Xcc-8004.1911.1 -0.8 -1.7 hypothetical protein compare
Xcc-8004.502.1 -0.8 -1.6 Biotin synthesis protein BioH compare
Xcc-8004.556.1 -0.8 -2.2 component of multidrug efflux system compare
Xcc-8004.2128.1 -0.8 -2.1 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Xcc-8004.3742.1 -0.8 -1.0 Type III effector compare
Xcc-8004.4105.1 -0.8 -1.3 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.1563.1 -0.8 -2.6 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) compare
Xcc-8004.2105.1 -0.8 -3.1 FIG01210123: hypothetical protein compare
Xcc-8004.2673.1 -0.8 -2.0 FIG01211365: hypothetical protein compare
Xcc-8004.3981.1 -0.8 -2.4 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.4112.1 -0.8 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3740.1 -0.8 -1.8 Type III secretion HpaB protein compare
Xcc-8004.2294.1 -0.7 -2.0 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.5369.1 -0.7 -2.7 Lipoprotein compare
Xcc-8004.4777.1 -0.7 -4.4 ATP-dependent RNA helicase RhlB compare
Xcc-8004.3690.1 -0.7 -3.9 Transcriptional regulator, XRE family protein compare
Xcc-8004.5326.1 -0.7 -0.8 Mobile element protein compare
Xcc-8004.1858.1 -0.7 -0.7 FIG01211170: hypothetical protein compare
Xcc-8004.3717.1 -0.7 -1.7 Hpa2 protein compare
Xcc-8004.4441.1 -0.7 -1.6 Tyrosine recombinase XerD compare
Xcc-8004.4374.1 -0.7 -1.4 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Xcc-8004.2343.1 -0.7 -1.0 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare


Specific Phenotypes

For 1 genes in this experiment