Experiment set7IT065 for Methanococcus maripaludis S2

Compare to:

H2 N-free with 10mM Glycine

200 most important genes:

  gene name fitness t score description  
MMP_RS01500 -5.5 -2.5 CBS domain-containing protein compare
MMP_RS08720 -4.9 -1.5 4Fe-4S binding protein compare
MMP_RS01755 -4.7 -1.0 DUF2097 domain-containing protein compare
MMP_RS07730 -4.7 -1.6 pyruvate synthase subunit beta compare
MMP_RS01175 -4.3 -4.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS02145 -4.2 -11.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS01795 -4.2 -1.8 methanogenesis marker 6 protein compare
MMP_RS04445 -4.1 -9.1 P-II family nitrogen regulator compare
MMP_RS01830 -4.1 -1.2 tRNA-Val compare
MMP_RS00300 -4.1 -0.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS02355 -4.0 -3.4 30S ribosomal protein S27ae compare
MMP_RS04710 -4.0 -1.9 hypothetical protein compare
MMP_RS01385 -4.0 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01980 -3.9 -15.6 trimeric intracellular cation channel family protein compare
MMP_RS08435 -3.9 -2.5 Era-like GTP-binding protein compare
MMP_RS04455 -3.8 -24.3 nitrogenase subunit alpha compare
MMP_RS00455 -3.8 -11.9 orotate phosphoribosyltransferase-like protein compare
MMP_RS04450 -3.8 -15.4 P-II family nitrogen regulator compare
MMP_RS02685 -3.7 -13.3 molybdate ABC transporter substrate-binding protein compare
MMP_RS04465 -3.7 -23.0 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS04460 -3.7 -22.0 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS04440 -3.6 -10.3 nitrogenase iron protein compare
MMP_RS07600 -3.6 -2.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS02670 -3.6 -14.8 ATP-binding cassette domain-containing protein compare
MMP_RS02680 -3.5 -7.6 ABC transporter permease compare
MMP_RS04470 -3.5 -20.3 nitrogenase compare
MMP_RS01545 -3.5 -1.0 CBS domain-containing protein compare
MMP_RS07525 -3.5 -10.4 4Fe-4S binding protein compare
MMP_RS02245 -3.5 -4.0 hypothetical protein compare
MMP_RS00040 -3.5 -7.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS02010 -3.5 -11.9 PHP domain-containing protein compare
MMP_RS07380 -3.4 -2.5 transcription elongation factor Spt5 compare
MMP_RS00695 -3.4 -0.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS06400 -3.4 -1.7 4Fe-4S binding protein compare
MMP_RS00555 -3.3 -7.9 MFS transporter compare
MMP_RS07390 -3.3 -2.7 cell division protein FtsZ compare
MMP_RS01020 -3.3 -1.1 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS05500 -3.2 -8.8 2-isopropylmalate synthase compare
MMP_RS02730 -3.2 -13.0 ModD protein compare
MMP_RS07185 -3.2 -14.1 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06625 -3.2 -1.9 DNA primase compare
MMP_RS00305 -3.2 -1.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS03035 -3.2 -4.2 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01380 -3.2 -4.4 PHP domain-containing protein compare
MMP_RS07365 -3.1 -12.8 2-phosphoglycerate kinase compare
MMP_RS01005 -3.1 -1.4 riboflavin synthase compare
MMP_RS07605 -3.1 -2.9 diadenylate cyclase compare
MMP_RS04790 -3.1 -15.0 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS01455 -3.1 -7.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS02675 -3.0 -3.7 hypothetical protein compare
MMP_RS06315 -3.0 -0.6 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS00310 -3.0 -14.3 CBS domain-containing protein compare
MMP_RS05930 -3.0 -2.5 3-isopropylmalate dehydratase large subunit compare
MMP_RS08165 -3.0 -2.7 phosphoglycerate dehydrogenase compare
MMP_RS06725 -2.9 -12.3 hypothetical protein compare
MMP_RS08500 -2.9 -4.5 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS07635 -2.9 -8.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS03315 -2.8 -1.3 ferrous iron transport protein A compare
MMP_RS01800 -2.8 -4.1 TIGR00303 family protein compare
MMP_RS00685 -2.8 -4.2 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00735 -2.7 -3.5 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS04215 -2.7 -6.5 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS02175 -2.7 -0.8 DUF1611 domain-containing protein compare
MMP_RS02900 -2.7 -0.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08650 -2.7 -3.0 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS02195 -2.7 -3.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06295 -2.6 -7.8 methanogenesis marker 14 protein compare
MMP_RS01610 -2.6 -4.0 hypothetical protein compare
MMP_RS06285 -2.6 -2.9 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06895 -2.6 -1.9 selenocysteine-specific translation elongation factor compare
MMP_RS07445 -2.5 -6.1 helix-turn-helix domain-containing protein compare
MMP_RS07845 -2.5 -1.9 LL-diaminopimelate aminotransferase compare
MMP_RS08790 -2.5 -2.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS03025 -2.5 -5.6 molybdenum cofactor guanylyltransferase compare
MMP_RS03960 -2.5 -1.0 hypothetical protein compare
MMP_RS06730 -2.5 -1.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS03205 -2.5 -1.7 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS03435 -2.5 -1.7 ketol-acid reductoisomerase compare
MMP_RS03110 -2.5 -7.0 glycosyltransferase family 2 protein compare
MMP_RS02240 -2.5 -2.7 methanogenesis marker 7 protein compare
MMP_RS06670 -2.5 -6.1 glucose-6-phosphate isomerase compare
MMP_RS00985 -2.5 -4.5 CDC48 family AAA ATPase compare
MMP_RS06475 -2.4 -4.2 FAD-dependent oxidoreductase compare
MMP_RS05265 -2.4 -2.0 2-isopropylmalate synthase compare
MMP_RS06270 -2.4 -6.0 TIGR00300 family protein compare
MMP_RS08440 -2.4 -2.8 cell division protein SepF compare
MMP_RS02345 -2.4 -3.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS07075 -2.4 -4.5 phosphomannomutase/phosphoglucomutase compare
MMP_RS08635 -2.4 -1.8 UbiA family prenyltransferase compare
MMP_RS04780 -2.4 -3.2 ribonuclease P compare
MMP_RS07700 -2.4 -10.5 DUF1188 domain-containing protein compare
MMP_RS08570 -2.4 -9.5 coenzyme F420-0:L-glutamate ligase compare
MMP_RS05430 -2.4 -4.5 TIGR00288 family NYN domain-containing protein compare
MMP_RS08715 -2.4 -2.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08995 -2.3 -1.4 hypothetical protein compare
MMP_RS04585 -2.3 -9.7 AIR synthase related protein compare
MMP_RS06375 -2.3 -4.5 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06855 -2.3 -8.8 hypothetical protein compare
MMP_RS03700 -2.3 -9.8 sodium:proton antiporter compare
MMP_RS01265 -2.3 -3.2 hypothetical protein compare
MMP_RS08860 -2.3 -4.4 MinD/ParA family protein compare
MMP_RS02800 -2.3 -9.2 nucleotidyltransferase domain-containing protein compare
MMP_RS07695 -2.3 -6.1 DUF3236 domain-containing protein compare
MMP_RS05640 -2.2 -7.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS09020 -2.2 -1.6 hypothetical protein compare
MMP_RS00810 -2.2 -7.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01900 -2.2 -12.0 hypothetical protein compare
MMP_RS01225 -2.2 -4.5 DUF5379 domain-containing protein compare
MMP_RS01925 -2.2 -9.3 DUF1616 domain-containing protein compare
MMP_RS00915 -2.2 -4.9 DUF116 domain-containing protein compare
MMP_RS08645 -2.2 -6.0 UPF0179 family protein compare
MMP_RS01955 -2.2 -3.7 hypothetical protein compare
MMP_RS07535 -2.1 -8.4 4Fe-4S binding protein compare
MMP_RS01725 -2.1 -4.4 class I SAM-dependent methyltransferase family protein compare
MMP_RS03445 -2.1 -0.9 methanogenesis marker 17 protein compare
MMP_RS03580 -2.1 -2.4 signal recognition particle-docking protein FtsY compare
MMP_RS08745 -2.1 -6.5 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06230 -2.1 -2.4 helix-turn-helix domain-containing protein compare
MMP_RS04870 -2.1 -4.9 TIGR02253 family HAD-type hydrolase compare
MMP_RS04685 -2.1 -2.7 DUF126 domain-containing protein compare
MMP_RS01975 -2.1 -13.5 hypothetical protein compare
MMP_RS03600 -2.1 -2.1 triose-phosphate isomerase compare
MMP_RS04955 -2.1 -5.9 DNA topoisomerase I compare
MMP_RS04720 -2.1 -2.9 DedA family protein compare
MMP_RS04875 -2.1 -4.8 energy-converting hydrogenase B subunit P compare
MMP_RS05460 -2.1 -8.4 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS04605 -2.1 -4.6 cobalt ECF transporter T component CbiQ compare
MMP_RS06120 -2.1 -1.8 UPF0147 family protein compare
MMP_RS07735 -2.0 -0.9 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01915 -2.0 -11.9 DUF354 domain-containing protein compare
MMP_RS07355 -2.0 -0.8 transcription factor S compare
MMP_RS04850 -2.0 -13.3 UPF0254 family protein compare
MMP_RS07725 -2.0 -3.5 4Fe-4S dicluster domain-containing protein compare
MMP_RS08820 -2.0 -4.8 hypothetical protein compare
MMP_RS05875 -2.0 -4.0 hydroxyethylthiazole kinase compare
MMP_RS00725 -2.0 -5.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS04615 -1.9 -2.8 PDGLE domain-containing protein compare
MMP_RS07005 -1.9 -0.5 4Fe-4S binding protein compare
MMP_RS01905 -1.9 -11.5 glycosyltransferase compare
MMP_RS05925 -1.9 -2.6 small nuclear ribonucleoprotein compare
MMP_RS01220 -1.9 -7.3 hypothetical protein compare
MMP_RS06630 -1.9 -0.6 UPF0058 family protein compare
MMP_RS07435 -1.8 -1.6 GMP synthase subunit A compare
MMP_RS00315 -1.8 -5.8 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS05515 -1.8 -4.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07575 -1.8 -3.0 RNA ligase partner protein compare
MMP_RS07200 -1.8 -5.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS03385 -1.8 -1.0 cation diffusion facilitator family transporter compare
MMP_RS01325 -1.8 -1.5 dihydroneopterin aldolase family protein compare
MMP_RS00730 -1.8 -4.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS05540 -1.7 -2.3 hypothetical protein compare
MMP_RS05550 -1.7 -0.6 cation:proton antiporter compare
MMP_RS01700 -1.7 -0.6 dihydroxy-acid dehydratase compare
MMP_RS06020 -1.7 -3.7 archaeoflavoprotein AfpA compare
MMP_RS01875 -1.7 -7.6 N-acetyltransferase compare
MMP_RS00060 -1.7 -1.9 3-dehydroquinate synthase II compare
MMP_RS01970 -1.7 -8.9 TIGR04279 domain-containing protein compare
MMP_RS03475 -1.7 -0.6 hypothetical protein compare
MMP_RS03090 -1.7 -5.8 cation:proton antiporter compare
MMP_RS08195 -1.7 -6.9 hypothetical protein compare
MMP_RS08330 -1.7 -6.0 NADH-quinone oxidoreductase subunit H compare
MMP_RS05425 -1.7 -4.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01085 -1.7 -1.6 hypothetical protein compare
MMP_RS08210 -1.7 -2.0 phosphatidylglycerophosphatase A compare
MMP_RS08660 -1.6 -6.5 DHH family phosphoesterase compare
MMP_RS04900 -1.6 -10.2 hypothetical protein compare
MMP_RS01885 -1.6 -4.5 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS03420 -1.6 -2.4 acetolactate synthase small subunit compare
MMP_RS00115 -1.6 -7.3 radical SAM protein compare
MMP_RS02340 -1.6 -1.3 DNA-directed RNA polymerase subunit E'' compare
MMP_RS05280 -1.6 -5.4 COG1361 S-layer family protein compare
MMP_RS00520 -1.6 -1.4 RNA polymerase Rpb4 family protein compare
MMP_RS02165 -1.6 -5.6 tRNA-dihydrouridine synthase compare
MMP_RS04090 -1.6 -2.3 hypothetical protein compare
MMP_RS02780 -1.5 -5.6 hypothetical protein compare
MMP_RS00130 -1.5 -1.0 nickel-responsive transcriptional regulator NikR compare
MMP_RS01155 -1.5 -4.5 XRE family transcriptional regulator compare
MMP_RS01880 -1.5 -5.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01910 -1.5 -7.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS03020 -1.5 -4.4 peptidylprolyl isomerase compare
MMP_RS08940 -1.5 -1.0 MetS family NSS transporter small subunit compare
MMP_RS06865 -1.5 -2.1 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS00035 -1.5 -4.5 DUF2098 family protein compare
MMP_RS02135 -1.5 -3.3 DUF5612 domain-containing protein compare
MMP_RS08725 -1.5 -1.7 Ni/Fe hydrogenase subunit alpha compare
MMP_RS08155 -1.5 -5.1 hypothetical protein compare
MMP_RS01920 -1.5 -8.6 glycosyltransferase family 2 protein compare
MMP_RS06395 -1.5 -2.3 ThiF family adenylyltransferase compare
MMP_RS04890 -1.4 -0.6 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS07530 -1.4 -7.4 4Fe-4S binding protein compare
MMP_RS01775 -1.4 -1.4 TIGR00297 family protein compare
MMP_RS07710 -1.4 -4.3 cell division protein FtsZ compare
MMP_RS02595 -1.4 -1.0 putative zinc-binding protein compare
MMP_RS04500 -1.4 -8.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS06940 -1.4 -2.3 polyprenyl diphosphate synthase compare
MMP_RS02280 -1.4 -0.6 DUF211 domain-containing protein compare
MMP_RS05440 -1.4 -6.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS08225 -1.4 -5.4 RimK family alpha-L-glutamate ligase compare
MMP_RS07090 -1.4 -5.7 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01600 -1.4 -1.9 50S ribosomal protein L15e compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Glycine in Methanococcus maripaludis S2

For nitrogen source Glycine across organisms