Experiment set7IT064 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
Xcc-8004.401.1 -3.5 -2.8 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.1241.1 -3.5 -6.3 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4039.1 -3.5 -3.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.589.1 -3.4 -2.8 hypothetical protein compare
Xcc-8004.1359.1 -3.2 -6.8 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.2182.1 -3.2 -14.7 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.2569.1 -3.1 -2.3 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.3395.1 -3.1 -3.6 Transcriptional regulator, GntR family compare
Xcc-8004.3346.1 -2.9 -2.9 hypothetical protein compare
Xcc-8004.2110.1 -2.9 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3976.1 -2.9 -5.4 2-methylaconitate cis-trans isomerase compare
Xcc-8004.2922.1 -2.9 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.726.1 -2.8 -1.1 Putative preQ0 transporter compare
Xcc-8004.659.1 -2.8 -3.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.623.1 -2.7 -2.3 Phosphoserine phosphatase compare
Xcc-8004.4620.1 -2.6 -7.8 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.3754.1 -2.5 -2.6 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.1372.1 -2.4 -1.7 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1244.1 -2.4 -8.8 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.1436.1 -2.3 -2.1 Holliday junction DNA helicase RuvA compare
Xcc-8004.5203.1 -2.3 -2.0 Twin-arginine translocation protein TatB compare
Xcc-8004.130.1 -2.2 -6.0 hypothetical protein compare
Xcc-8004.4732.1 -2.2 -1.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.4836.1 -2.1 -4.9 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.3108.1 -2.1 -3.4 Regulatory protein RecX compare
Xcc-8004.738.1 -2.1 -2.3 Malonate decarboxylase gamma subunit compare
Xcc-8004.4275.1 -2.1 -6.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.950.1 -2.0 -1.3 General secretion pathway protein L compare
Xcc-8004.1236.1 -2.0 -5.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3792.1 -2.0 -1.3 Mobile element protein compare
Xcc-8004.787.1 -2.0 -1.1 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.3728.1 -2.0 -1.8 hypothetical protein compare
Xcc-8004.736.1 -1.9 -2.6 hypothetical protein compare
Xcc-8004.3979.1 -1.9 -6.6 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.970.1 -1.9 -3.8 Probable cytochrome c2 compare
Xcc-8004.171.1 -1.8 -1.1 hypothetical protein compare
Xcc-8004.4824.1 -1.8 -7.7 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2343.1 -1.8 -2.0 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1086.1 -1.8 -2.4 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2055.1 -1.8 -1.7 Mobile element protein compare
Xcc-8004.2923.1 -1.8 -6.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.3576.1 -1.8 -6.0 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.2169.1 -1.8 -2.4 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.127.1 -1.7 -1.8 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4810.1 -1.7 -6.7 hypothetical protein compare
Xcc-8004.2422.1 -1.7 -2.4 Putative stress-responsive transcriptional regulator compare
Xcc-8004.3322.1 -1.6 -1.5 FIG01211446: hypothetical protein compare
Xcc-8004.2411.1 -1.6 -4.6 Small-conductance mechanosensitive channel compare
Xcc-8004.3473.1 -1.6 -1.1 FIG01213437: hypothetical protein compare
Xcc-8004.3723.1 -1.6 -2.4 hypothetical protein compare
Xcc-8004.4329.1 -1.6 -1.4 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.1196.1 -1.6 -5.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.3310.1 -1.6 -4.1 Chromosome partition protein smc compare
Xcc-8004.3955.1 -1.5 -3.7 HflK protein compare
Xcc-8004.1811.1 -1.5 -1.4 extracellular serine protease compare
Xcc-8004.609.1 -1.5 -1.9 hypothetical protein compare
Xcc-8004.3054.1 -1.5 -1.4 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.1205.1 -1.5 -2.2 hypothetical protein compare
Xcc-8004.3426.1 -1.5 -4.8 Chaperone protein DnaJ compare
Xcc-8004.3750.1 -1.5 -3.9 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.3304.1 -1.5 -0.6 FIG01211108: hypothetical protein compare
Xcc-8004.2924.1 -1.5 -4.3 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.4538.1 -1.4 -1.5 hypothetical protein compare
Xcc-8004.4844.1 -1.4 -0.8 FIG01210764: hypothetical protein compare
Xcc-8004.4098.1 -1.4 -3.4 FIG01211222: hypothetical protein compare
Xcc-8004.1790.1 -1.4 -2.7 Zinc uptake regulation protein ZUR compare
Xcc-8004.2958.1 -1.4 -2.0 tryptophan-rich sensory protein compare
Xcc-8004.4526.1 -1.4 -6.2 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.3686.1 -1.4 -4.3 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.1677.1 -1.4 -3.0 FIG01209993: hypothetical protein compare
Xcc-8004.3479.1 -1.4 -1.3 aklaviketone reductase compare
Xcc-8004.5087.1 -1.4 -2.3 FIG027190: Putative transmembrane protein compare
Xcc-8004.944.1 -1.4 -2.0 General secretion pathway protein F compare
Xcc-8004.2358.1 -1.4 -4.9 Segregation and condensation protein A compare
Xcc-8004.5368.1 -1.4 -2.3 FIG01210868: hypothetical protein compare
Xcc-8004.319.1 -1.3 -6.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.3324.1 -1.3 -2.8 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2653.1 -1.3 -3.2 hypothetical protein compare
Xcc-8004.3120.1 -1.3 -1.9 RNA-binding protein Hfq compare
Xcc-8004.3752.1 -1.3 -1.2 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.1763.1 -1.3 -1.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1619.1 -1.3 -1.3 PspA/IM30 family protein compare
Xcc-8004.269.1 -1.3 -2.5 FIG136845: Rhodanese-related sulfurtransferase compare
Xcc-8004.318.1 -1.3 -3.9 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.2401.1 -1.3 -1.0 FIG00545367: hypothetical protein compare
Xcc-8004.4635.1 -1.3 -1.8 hypothetical protein compare
Xcc-8004.234.1 -1.3 -6.4 cardiolipin synthase compare
Xcc-8004.2879.1 -1.3 -0.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.601.1 -1.3 -3.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.2930.1 -1.3 -1.9 hypothetical protein compare
Xcc-8004.1961.1 -1.3 -1.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.93.1 -1.3 -2.2 FIG01211857: hypothetical protein compare
Xcc-8004.280.1 -1.2 -3.6 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.1566.1 -1.2 -1.4 Putative activity regulator of membrane protease YbbK compare
Xcc-8004.2652.1 -1.2 -2.2 response regulator compare
Xcc-8004.3303.1 -1.2 -2.2 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.3376.1 -1.2 -2.0 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Xcc-8004.4957.1 -1.2 -1.3 hypothetical protein compare
Xcc-8004.3815.1 -1.2 -1.7 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.2412.1 -1.2 -6.1 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.585.1 -1.2 -1.2 Na(+) H(+) antiporter subunit F compare
Xcc-8004.4112.1 -1.2 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3653.1 -1.2 -1.4 FIG01212122: hypothetical protein compare
Xcc-8004.4341.1 -1.2 -2.7 FIG01210371: hypothetical protein compare
Xcc-8004.3281.1 -1.2 -4.2 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.1906.1 -1.2 -1.9 lipoprotein compare
Xcc-8004.4499.1 -1.2 -1.3 Mobile element protein compare
Xcc-8004.924.1 -1.2 -1.6 FIG01200701: possible membrane protein compare
Xcc-8004.2012.1 -1.2 -2.8 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1710.1 -1.2 -3.0 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.4046.1 -1.2 -4.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.574.1 -1.2 -3.9 Di-/tripeptide transporter compare
Xcc-8004.2011.1 -1.2 -1.5 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.914.1 -1.2 -3.7 tail-specific protease compare
Xcc-8004.2497.1 -1.2 -0.7 Mobile element protein compare
Xcc-8004.764.1 -1.1 -1.4 FIG01213873: hypothetical protein compare
Xcc-8004.4204.1 -1.1 -1.4 FIG01210014: hypothetical protein compare
Xcc-8004.1329.1 -1.1 -2.5 Virulence regulator compare
Xcc-8004.2834.1 -1.1 -2.8 Chemotaxis response - phosphatase CheZ compare
Xcc-8004.4596.1 -1.1 -4.9 hypothetical protein compare
Xcc-8004.965.1 -1.1 -2.8 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Xcc-8004.3749.1 -1.1 -4.1 hypothetical protein compare
Xcc-8004.1891.1 -1.1 -1.3 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.1776.1 -1.1 -2.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.4961.1 -1.1 -2.7 Two-component system regulatory protein compare
Xcc-8004.3816.1 -1.0 -3.9 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.2620.1 -1.0 -4.6 NfuA Fe-S protein maturation compare
Xcc-8004.3676.1 -1.0 -1.3 Translation elongation factor LepA compare
Xcc-8004.2230.1 -1.0 -2.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.1504.1 -1.0 -1.2 type IV pili signal transduction protein PilI compare
Xcc-8004.290.1 -1.0 -2.8 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.3402.1 -1.0 -1.4 FIG01210246: hypothetical protein compare
Xcc-8004.1955.1 -1.0 -3.4 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.3103.1 -1.0 -1.4 hypothetical protein compare
Xcc-8004.2356.1 -1.0 -1.9 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.1728.1 -1.0 -2.0 FIG01210339: hypothetical protein compare
Xcc-8004.143.1 -1.0 -2.5 hypothetical protein compare
Xcc-8004.715.1 -1.0 -2.0 RNA polymerase sigma factor compare
Xcc-8004.5114.1 -1.0 -3.3 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3817.1 -1.0 -3.1 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.2372.1 -1.0 -3.9 Pheromone shutdown protein compare
Xcc-8004.5252.1 -1.0 -3.5 FIG01210658: hypothetical protein compare
Xcc-8004.3072.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.1453.1 -1.0 -1.7 hypothetical protein compare
Xcc-8004.5189.1 -1.0 -1.4 FIG01212821: hypothetical protein compare
Xcc-8004.3855.1 -1.0 -3.9 FIG01209965: hypothetical protein compare
Xcc-8004.4694.1 -1.0 -1.3 FIG01210824: hypothetical protein compare
Xcc-8004.4373.1 -1.0 -1.7 LppC putative lipoprotein compare
Xcc-8004.4222.1 -1.0 -4.3 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) compare
Xcc-8004.2644.1 -1.0 -1.3 hypothetical protein compare
Xcc-8004.4457.1 -1.0 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.3536.1 -1.0 -3.4 FIG01210913: hypothetical protein compare
Xcc-8004.3954.1 -1.0 -2.9 HflC protein compare
Xcc-8004.1433.1 -1.0 -2.3 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.2228.1 -0.9 -2.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.321.1 -0.9 -5.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.957.1 -0.9 -2.6 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1601.1 -0.9 -3.1 L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17) compare
Xcc-8004.2935.1 -0.9 -5.9 Amino acid transporters compare
Xcc-8004.4477.1 -0.9 -1.2 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.4510.1 -0.9 -1.1 ATP binding component of ABC-transporter compare
Xcc-8004.2711.1 -0.9 -0.6 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.3957.1 -0.9 -2.5 DnaJ-class molecular chaperone CbpA compare
Xcc-8004.4374.1 -0.9 -1.8 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Xcc-8004.1873.1 -0.9 -1.7 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.5367.1 -0.9 -3.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.1226.1 -0.9 -1.3 FIG01210021: hypothetical protein compare
Xcc-8004.4852.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.3668.1 -0.9 -1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1771.1 -0.9 -1.1 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.1653.1 -0.9 -2.5 FIG01210004: hypothetical protein compare
Xcc-8004.1838.1 -0.9 -0.8 FIG002958: hypothetical protein compare
Xcc-8004.2839.1 -0.9 -0.6 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.3211.1 -0.9 -1.3 protein of unknown function DUF88 compare
Xcc-8004.3049.1 -0.9 -3.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1171.1 -0.9 -2.1 Reductase compare
Xcc-8004.1032.1 -0.9 -2.6 Sensor histidine kinase compare
Xcc-8004.2217.1 -0.9 -1.7 FIG01209779: hypothetical protein compare
Xcc-8004.1306.1 -0.9 -2.4 hypothetical protein compare
Xcc-8004.2383.1 -0.9 -1.6 FIG01211288: hypothetical protein compare
Xcc-8004.192.1 -0.9 -3.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3647.1 -0.9 -2.3 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.4982.1 -0.9 -1.1 Protein yjbJ compare
Xcc-8004.4672.1 -0.9 -1.2 hypothetical protein compare
Xcc-8004.1871.1 -0.9 -2.6 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.5407.1 -0.9 -1.0 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.3687.1 -0.8 -2.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.4948.1 -0.8 -1.4 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.312.1 -0.8 -2.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Xcc-8004.1770.1 -0.8 -1.5 hypothetical protein compare
Xcc-8004.2259.1 -0.8 -2.2 PhbF compare
Xcc-8004.1290.1 -0.8 -3.3 hypothetical protein compare
Xcc-8004.2646.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.4168.1 -0.8 -1.8 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.5365.1 -0.8 -2.8 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.219.1 -0.8 -1.8 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) compare
Xcc-8004.4292.1 -0.8 -1.4 Taurine transport ATP-binding protein TauB compare
Xcc-8004.1880.1 -0.8 -3.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.1385.1 -0.8 -4.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Xcc-8004.3688.1 -0.8 -2.6 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction control experiments