Experiment set7IT063 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
Xcc-8004.3728.1 -5.2 -2.5 hypothetical protein compare
Xcc-8004.1380.1 -5.2 -2.5 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.787.1 -4.9 -1.4 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.1615.1 -4.8 -2.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.3322.1 -4.3 -1.7 FIG01211446: hypothetical protein compare
Xcc-8004.1118.1 -4.0 -1.6 hypothetical protein compare
Xcc-8004.1768.1 -3.3 -1.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.4620.1 -3.2 -7.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4477.1 -3.0 -2.0 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.564.1 -3.0 -1.9 Mobile element protein compare
Xcc-8004.1436.1 -2.9 -2.0 Holliday junction DNA helicase RuvA compare
Xcc-8004.3976.1 -2.9 -5.1 2-methylaconitate cis-trans isomerase compare
Xcc-8004.659.1 -2.8 -2.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.589.1 -2.8 -2.6 hypothetical protein compare
Xcc-8004.2182.1 -2.8 -13.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.3108.1 -2.6 -4.3 Regulatory protein RecX compare
Xcc-8004.4039.1 -2.6 -3.2 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.2217.1 -2.6 -3.5 FIG01209779: hypothetical protein compare
Xcc-8004.5133.1 -2.6 -1.6 FIG01212313: hypothetical protein compare
Xcc-8004.127.1 -2.5 -1.7 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1906.1 -2.5 -3.6 lipoprotein compare
Xcc-8004.3346.1 -2.3 -3.1 hypothetical protein compare
Xcc-8004.1790.1 -2.3 -3.4 Zinc uptake regulation protein ZUR compare
Xcc-8004.585.1 -2.2 -1.8 Na(+) H(+) antiporter subunit F compare
Xcc-8004.601.1 -2.2 -5.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1372.1 -2.2 -1.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.3898.1 -2.2 -1.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.3815.1 -2.2 -3.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.2923.1 -2.2 -7.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.4694.1 -2.2 -3.3 FIG01210824: hypothetical protein compare
Xcc-8004.3103.1 -2.1 -1.7 hypothetical protein compare
Xcc-8004.3395.1 -2.1 -2.9 Transcriptional regulator, GntR family compare
Xcc-8004.456.1 -2.1 -1.2 carbonic anhydrase, family 3 compare
Xcc-8004.2632.1 -2.1 -2.0 Minor coat protein compare
Xcc-8004.432.1 -2.1 -1.3 hypothetical protein compare
Xcc-8004.2011.1 -2.0 -2.0 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.3979.1 -2.0 -5.2 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.3310.1 -1.9 -4.1 Chromosome partition protein smc compare
Xcc-8004.3955.1 -1.9 -4.1 HflK protein compare
Xcc-8004.1720.1 -1.9 -2.6 UPF0301 protein YqgE compare
Xcc-8004.1241.1 -1.9 -4.0 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.623.1 -1.9 -1.8 Phosphoserine phosphatase compare
Xcc-8004.99.1 -1.9 -2.2 FIG01211055: hypothetical protein compare
Xcc-8004.4538.1 -1.9 -1.8 hypothetical protein compare
Xcc-8004.876.1 -1.9 -1.4 Mobile element protein compare
Xcc-8004.2865.1 -1.8 -1.5 FIG01210234: hypothetical protein compare
Xcc-8004.1236.1 -1.7 -3.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.2533.1 -1.7 -2.2 Candidate type III effector Hop protein compare
Xcc-8004.4046.1 -1.7 -6.9 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4884.1 -1.6 -1.6 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.3855.1 -1.6 -6.1 FIG01209965: hypothetical protein compare
Xcc-8004.3576.1 -1.6 -4.9 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.318.1 -1.6 -4.7 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.3167.1 -1.6 -2.6 biotin synthesis protein compare
Xcc-8004.1244.1 -1.6 -5.1 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.4322.1 -1.6 -1.6 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.3222.1 -1.6 -1.9 Mobile element protein compare
Xcc-8004.2294.1 -1.6 -2.1 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.3685.1 -1.5 -2.3 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Xcc-8004.2711.1 -1.5 -1.4 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.3686.1 -1.5 -4.9 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.1086.1 -1.5 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4871.1 -1.5 -1.5 Phage tail completion protein compare
Xcc-8004.2343.1 -1.5 -1.8 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1113.1 -1.5 -2.3 hypothetical protein compare
Xcc-8004.4810.1 -1.5 -5.6 hypothetical protein compare
Xcc-8004.1196.1 -1.5 -5.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.1007.1 -1.4 -1.2 acetylxylan esterase compare
Xcc-8004.2569.1 -1.4 -1.8 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.5098.1 -1.4 -1.3 hypothetical protein compare
Xcc-8004.3339.1 -1.4 -3.2 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.2574.1 -1.4 -1.2 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.1316.1 -1.4 -1.5 hypothetical protein compare
Xcc-8004.5280.1 -1.4 -1.3 hypothetical protein compare
Xcc-8004.3717.1 -1.4 -2.0 Hpa2 protein compare
Xcc-8004.1747.1 -1.4 -2.2 FIG01210249: hypothetical protein compare
Xcc-8004.2372.1 -1.4 -4.5 Pheromone shutdown protein compare
Xcc-8004.2411.1 -1.4 -5.0 Small-conductance mechanosensitive channel compare
Xcc-8004.2922.1 -1.4 -1.5 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.3676.1 -1.4 -2.5 Translation elongation factor LepA compare
Xcc-8004.1249.1 -1.3 -3.8 Transcriptional regulator compare
Xcc-8004.1696.1 -1.3 -1.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1621.1 -1.3 -3.8 FIG01213569: hypothetical protein compare
Xcc-8004.234.1 -1.3 -6.9 cardiolipin synthase compare
Xcc-8004.5253.1 -1.3 -0.9 hypothetical protein compare
Xcc-8004.1811.1 -1.3 -1.2 extracellular serine protease compare
Xcc-8004.3054.1 -1.3 -1.1 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3451.1 -1.3 -1.2 hypothetical protein compare
Xcc-8004.3647.1 -1.3 -3.3 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.3230.1 -1.3 -1.6 Phage DNA invertase compare
Xcc-8004.3192.1 -1.3 -2.8 Cytochrome c heme lyase subunit CcmL compare
Xcc-8004.137.1 -1.3 -1.6 FIG01209674: hypothetical protein compare
Xcc-8004.1437.1 -1.3 -3.6 Kup system potassium uptake protein compare
Xcc-8004.2958.1 -1.3 -1.0 tryptophan-rich sensory protein compare
Xcc-8004.4102.1 -1.3 -1.2 FIG01211949: hypothetical protein compare
Xcc-8004.5125.1 -1.3 -2.9 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.3379.1 -1.3 -2.6 Transcriptional regulator, ArsR family / Methyltransferase fusion compare
Xcc-8004.1771.1 -1.3 -1.1 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.5202.1 -1.3 -2.8 Twin-arginine translocation protein TatC compare
Xcc-8004.2212.1 -1.2 -2.3 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Xcc-8004.3981.1 -1.2 -3.2 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.1359.1 -1.2 -2.9 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.1366.1 -1.2 -2.6 hypothetical protein compare
Xcc-8004.4168.1 -1.2 -3.0 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.738.1 -1.2 -1.6 Malonate decarboxylase gamma subunit compare
Xcc-8004.2015.1 -1.2 -3.3 Short chain dehydrogenase compare
Xcc-8004.543.1 -1.2 -1.5 FIG01210004: hypothetical protein compare
Xcc-8004.5087.1 -1.2 -1.9 FIG027190: Putative transmembrane protein compare
Xcc-8004.2337.1 -1.2 -3.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.2110.1 -1.2 -1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4777.1 -1.2 -5.6 ATP-dependent RNA helicase RhlB compare
Xcc-8004.574.1 -1.2 -4.4 Di-/tripeptide transporter compare
Xcc-8004.1691.1 -1.2 -3.0 FIG019175: putative membrane protein compare
Xcc-8004.2614.1 -1.2 -1.6 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2169.1 -1.2 -2.0 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
Xcc-8004.2644.1 -1.2 -1.2 hypothetical protein compare
Xcc-8004.2358.1 -1.1 -4.7 Segregation and condensation protein A compare
Xcc-8004.610.1 -1.1 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3954.1 -1.1 -3.1 HflC protein compare
Xcc-8004.5167.1 -1.1 -1.6 L-fuconate dehydratase (EC 4.2.1.68) compare
Xcc-8004.726.1 -1.1 -0.7 Putative preQ0 transporter compare
Xcc-8004.2230.1 -1.1 -3.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.4204.1 -1.1 -2.0 FIG01210014: hypothetical protein compare
Xcc-8004.130.1 -1.1 -3.2 hypothetical protein compare
Xcc-8004.4465.1 -1.1 -3.4 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.1082.1 -1.1 -1.5 FIG01211203: hypothetical protein compare
Xcc-8004.4697.1 -1.1 -2.0 FIG01210654: hypothetical protein compare
Xcc-8004.2921.1 -1.1 -1.5 ferrous iron transport protein compare
Xcc-8004.3792.1 -1.1 -0.7 Mobile element protein compare
Xcc-8004.4824.1 -1.1 -4.4 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1124.1 -1.1 -1.3 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.3632.1 -1.1 -1.2 FIG01209689: hypothetical protein compare
Xcc-8004.5302.1 -1.1 -2.7 FIG039767: hypothetical protein compare
Xcc-8004.914.1 -1.1 -3.7 tail-specific protease compare
Xcc-8004.471.1 -1.1 -3.0 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Xcc-8004.1364.1 -1.1 -1.5 FIG01209970: hypothetical protein compare
Xcc-8004.1904.1 -1.1 -1.1 two-component system regulatory protein compare
Xcc-8004.2833.1 -1.1 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.3321.1 -1.1 -1.2 FIG01209847: hypothetical protein compare
Xcc-8004.353.1 -1.1 -1.3 FIG01210121: hypothetical protein compare
Xcc-8004.3603.1 -1.1 -3.3 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Xcc-8004.3723.1 -1.0 -1.0 hypothetical protein compare
Xcc-8004.2059.1 -1.0 -1.1 hypothetical protein compare
Xcc-8004.3324.1 -1.0 -2.2 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2319.1 -1.0 -2.2 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.3119.1 -1.0 -2.4 GTP-binding protein HflX compare
Xcc-8004.108.1 -1.0 -1.7 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Xcc-8004.2335.1 -1.0 -2.3 Transport ATP-binding protein CydC compare
Xcc-8004.4373.1 -1.0 -2.2 LppC putative lipoprotein compare
Xcc-8004.171.1 -1.0 -0.8 hypothetical protein compare
Xcc-8004.4275.1 -1.0 -2.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.3304.1 -1.0 -0.6 FIG01211108: hypothetical protein compare
Xcc-8004.3188.1 -1.0 -1.1 Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE compare
Xcc-8004.5252.1 -1.0 -2.7 FIG01210658: hypothetical protein compare
Xcc-8004.576.1 -1.0 -1.5 FIG01210281: hypothetical protein compare
Xcc-8004.2434.1 -1.0 -2.6 hypothetical protein compare
Xcc-8004.2228.1 -1.0 -2.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.3014.1 -1.0 -2.8 putative ATPase, AAA+ family protein compare
Xcc-8004.4105.1 -1.0 -1.5 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.1132.1 -1.0 -1.2 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.4526.1 -1.0 -4.1 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.1911.1 -1.0 -2.6 hypothetical protein compare
Xcc-8004.5352.1 -1.0 -1.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.3426.1 -1.0 -2.9 Chaperone protein DnaJ compare
Xcc-8004.328.1 -1.0 -1.9 FIG024006: iron uptake protein compare
Xcc-8004.319.1 -1.0 -3.9 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.4225.1 -1.0 -1.2 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.2012.1 -1.0 -2.6 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.3479.1 -1.0 -1.2 aklaviketone reductase compare
Xcc-8004.4246.1 -1.0 -2.7 FIG01212910: hypothetical protein compare
Xcc-8004.1763.1 -1.0 -1.7 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.805.1 -1.0 -1.9 Zinc transport protein ZntB compare
Xcc-8004.4596.1 -1.0 -4.4 hypothetical protein compare
Xcc-8004.1978.1 -1.0 -1.8 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.1919.1 -1.0 -2.9 FIG056164: rhomboid family serine protease compare
Xcc-8004.3459.1 -1.0 -1.2 FIG01212836: hypothetical protein compare
Xcc-8004.321.1 -0.9 -6.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.5082.1 -0.9 -2.6 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Xcc-8004.269.1 -0.9 -1.9 FIG136845: Rhodanese-related sulfurtransferase compare
Xcc-8004.1961.1 -0.9 -1.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.3982.1 -0.9 -2.6 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.3165.1 -0.9 -0.7 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.385.1 -0.9 -1.1 FIG01212287: hypothetical protein compare
Xcc-8004.3905.1 -0.9 -1.4 Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT compare
Xcc-8004.4441.1 -0.9 -2.1 Tyrosine recombinase XerD compare
Xcc-8004.5239.1 -0.9 -2.0 Hexuronate transporter compare
Xcc-8004.852.1 -0.9 -2.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
Xcc-8004.3130.1 -0.9 -3.2 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.1058.1 -0.9 -1.1 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.4478.1 -0.9 -5.4 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Xcc-8004.4956.1 -0.9 -2.3 Cytochrome B561 compare
Xcc-8004.2646.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.48.1 -0.9 -1.1 FIG01212903: hypothetical protein compare
Xcc-8004.2346.1 -0.9 -1.3 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.782.1 -0.9 -2.4 hypothetical protein compare
Xcc-8004.4923.1 -0.9 -1.8 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Xcc-8004.5135.1 -0.9 -2.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.5407.1 -0.9 -1.3 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.4375.1 -0.9 -1.9 Putative membrane-bound metal-dependent hydrolases compare
Xcc-8004.679.1 -0.9 -1.0 23Sr RNA gene compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction control experiments