Experiment set7IT063 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_15605 -4.2 -2.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_00760 -4.1 -5.9 envelope stress response regulator transcription factor CpxR compare
IAI47_08085 -3.7 -5.0 helix-turn-helix domain-containing protein compare
IAI47_16085 -3.5 -2.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_18215 -3.2 -2.8 Trk system potassium transporter TrkH compare
IAI47_21765 -3.2 -3.1 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_17560 -2.8 -1.9 ROK family transcriptional regulator compare
IAI47_07480 -2.8 -3.3 hypothetical protein compare
IAI47_01365 -2.4 -2.3 inorganic phosphate transporter PitA compare
IAI47_20250 -2.3 -2.8 DeoR family transcriptional regulator compare
IAI47_06135 -2.3 -4.0 phosphohistidine phosphatase SixA compare
IAI47_16995 -2.2 -2.8 protein YrbN compare
IAI47_15970 -2.1 -3.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_13050 -2.1 -4.1 YbjN domain-containing protein compare
IAI47_20595 -2.1 -4.8 GhoT/OrtT family toxin compare
IAI47_11500 -2.0 -3.1 type VI secretion system tip protein VgrG compare
IAI47_04300 -1.9 -7.0 recombinase RecA compare
IAI47_13950 -1.9 -1.7 PhoH family protein compare
IAI47_02090 -1.9 -4.6 elongation factor Tu compare
IAI47_09235 -1.8 -1.3 type I DNA topoisomerase compare
IAI47_07490 -1.8 -2.4 DNA-binding protein compare
IAI47_05155 -1.8 -12.8 polyphosphate kinase 1 compare
IAI47_00780 -1.8 -4.7 6-phosphofructokinase compare
IAI47_18400 -1.7 -2.6 tyrosine recombinase XerC compare
IAI47_04335 -1.7 -2.3 tRNA-Arg compare
IAI47_05070 -1.7 -0.8 outer membrane protein assembly factor BamB compare
IAI47_00465 -1.7 -3.3 ribosome-dependent GTPase TypA compare
IAI47_17215 -1.7 -0.8 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_11480 -1.7 -2.2 hypothetical protein compare
IAI47_05755 -1.6 -4.6 hypothetical protein compare
IAI47_12925 -1.6 -3.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_11360 -1.5 -2.6 hypothetical protein compare
IAI47_07485 -1.5 -3.6 DUF4756 family protein compare
IAI47_11450 -1.5 -4.0 ankyrin repeat domain-containing protein compare
IAI47_08440 -1.4 -1.4 crossover junction endodeoxyribonuclease RuvC compare
IAI47_14325 -1.4 -1.4 ribosome-associated protein YbcJ compare
IAI47_08105 -1.4 -2.3 DinI family protein compare
IAI47_17020 -1.4 -3.2 30S ribosome-binding factor RbfA compare
IAI47_18830 -1.3 -1.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_11470 -1.3 -3.7 IS1 family transposase compare
IAI47_08680 -1.3 -5.4 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_19945 -1.3 -0.7 hypothetical protein compare
IAI47_14210 -1.2 -3.1 hypothetical protein compare
IAI47_04775 -1.2 -2.4 SIR2 family protein compare
IAI47_06965 -1.2 -1.3 glycosyltransferase family 2 protein compare
IAI47_13065 -1.2 -1.5 DUF1418 family protein compare
IAI47_01820 -1.2 -3.9 two-component system response regulator OmpR compare
IAI47_05090 -1.1 -3.4 hypothetical protein compare
IAI47_09855 -1.1 -2.5 DUF2384 domain-containing protein compare
IAI47_16095 -1.1 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_09945 -1.1 -3.5 hydroxyisourate hydrolase compare
IAI47_15485 -1.1 -1.0 molecular chaperone Skp compare
IAI47_03375 -1.1 -6.7 peptide chain release factor 3 compare
IAI47_07350 -1.1 -0.6 hypothetical protein compare
IAI47_05795 -1.1 -4.0 hypothetical protein compare
IAI47_13625 -1.1 -5.1 CDF family zinc transporter ZitB compare
IAI47_12260 -1.1 -3.3 hypothetical protein compare
IAI47_13695 -1.1 -0.5 colicin uptake protein TolR compare
IAI47_01825 -1.0 -5.9 two-component system sensor histidine kinase EnvZ compare
IAI47_17005 -1.0 -4.9 polyribonucleotide nucleotidyltransferase compare
IAI47_19035 -1.0 -0.7 transcriptional regulator compare
IAI47_03820 -1.0 -2.7 site-specific tyrosine recombinase XerD compare
IAI47_01530 -1.0 -3.9 DUF1145 family protein compare
IAI47_07030 -1.0 -3.2 HAD family hydrolase compare
IAI47_19825 -1.0 -4.4 EAL domain-containing protein compare
IAI47_18840 -1.0 -2.8 membrane protein insertion efficiency factor YidD compare
IAI47_05660 -1.0 -4.7 serine protease compare
IAI47_12930 -1.0 -2.5 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_15155 -1.0 -2.7 DUF943 family protein compare
IAI47_14730 -1.0 -1.0 exodeoxyribonuclease VII small subunit compare
IAI47_06245 -1.0 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_08450 -0.9 -2.1 Holliday junction branch migration DNA helicase RuvB compare
IAI47_09635 -0.9 -2.9 hypothetical protein compare
IAI47_11375 -0.9 -1.0 hypothetical protein compare
IAI47_13720 -0.9 -2.6 cytochrome d ubiquinol oxidase subunit II compare
IAI47_18410 -0.9 -2.8 diaminopimelate epimerase compare
IAI47_19380 -0.9 -2.1 hypothetical protein compare
IAI47_18530 -0.9 -2.2 thioredoxin TrxA compare
IAI47_12375 -0.9 -1.2 acyl carrier protein compare
IAI47_14230 -0.9 -3.8 DotU family type IV/VI secretion system protein compare
IAI47_10840 -0.9 -2.6 pyruvate kinase PykF compare
IAI47_09095 -0.9 -3.1 YciU family protein compare
IAI47_11420 -0.9 -1.2 hypothetical protein compare
IAI47_18775 -0.9 -4.0 hypothetical protein compare
IAI47_10555 -0.9 -2.5 hypothetical protein compare
IAI47_14295 -0.9 -1.8 hypothetical protein compare
IAI47_04705 -0.9 -0.8 hypothetical protein compare
IAI47_21505 -0.9 -3.0 DUF2256 domain-containing protein compare
IAI47_02990 -0.9 -4.6 hypothetical protein compare
IAI47_01780 -0.8 -1.5 Fe-S biogenesis protein NfuA compare
IAI47_14200 -0.8 -1.8 hypothetical protein compare
IAI47_16990 -0.8 -2.5 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_00430 -0.8 -6.0 DNA polymerase I compare
IAI47_04465 -0.8 -6.5 MFS transporter compare
IAI47_09100 -0.8 -4.5 cardiolipin synthase compare
IAI47_21355 -0.8 -2.3 DUF3606 domain-containing protein compare
IAI47_01475 -0.8 -4.0 MurR/RpiR family transcriptional regulator compare
IAI47_20300 -0.8 -3.6 hydrolase compare
IAI47_16670 -0.8 -2.8 stress protein compare
IAI47_07475 -0.8 -0.6 hypothetical protein compare
IAI47_12765 -0.8 -4.5 aspartate/tyrosine/aromatic aminotransferase compare
IAI47_11540 -0.8 -1.8 type VI secretion system tip protein VgrG compare
IAI47_12175 -0.8 -1.3 anti-sigma-28 factor FlgM compare
IAI47_11630 -0.8 -1.4 hypothetical protein compare
IAI47_04835 -0.8 -3.8 ATP-dependent RNA helicase SrmB compare
IAI47_09530 -0.8 -3.2 acid resistance repetitive basic protein Asr compare
IAI47_19950 -0.8 -3.7 SDR family oxidoreductase compare
IAI47_07025 -0.8 -2.4 glycosyltransferase family 4 protein compare
IAI47_03550 -0.8 -5.3 membrane-bound lytic murein transglycosylase MltC compare
IAI47_01345 -0.8 -5.6 oligopeptidase A compare
IAI47_18900 -0.8 -3.4 VOC family protein compare
IAI47_15395 -0.8 -5.3 MetQ/NlpA family lipoprotein compare
IAI47_15540 -0.8 -4.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_20130 -0.8 -2.2 nuclear transport factor 2 family protein compare
IAI47_08590 -0.8 -1.1 hypothetical protein compare
IAI47_08305 -0.8 -3.4 chemotaxis protein CheW compare
IAI47_02850 -0.8 -3.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_06380 -0.8 -1.2 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_10690 -0.8 -3.0 hypothetical protein compare
IAI47_07525 -0.8 -1.5 conjugal transfer protein TraD compare
IAI47_03590 -0.8 -3.3 YggT family protein compare
IAI47_02605 -0.8 -4.3 protease modulator HflC compare
IAI47_18015 -0.7 -5.4 homoserine O-succinyltransferase compare
IAI47_03610 -0.7 -2.7 YqgE/AlgH family protein compare
IAI47_18705 -0.7 -5.0 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_11430 -0.7 -3.3 RHS domain-containing protein compare
IAI47_18240 -0.7 -2.0 NAD(P)H-flavin reductase compare
IAI47_19320 -0.7 -2.7 LysE family translocator compare
IAI47_13725 -0.7 -2.8 cytochrome ubiquinol oxidase subunit I compare
IAI47_03555 -0.7 -2.9 oxidative damage protection protein compare
IAI47_19220 -0.7 -3.5 PTS galactitol transporter subunit IIA compare
IAI47_13740 -0.7 -0.8 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_13265 -0.7 -1.8 HutD family protein compare
IAI47_13355 -0.7 -4.5 DMT family transporter compare
IAI47_03440 -0.7 -1.5 general stress protein compare
IAI47_06655 -0.7 -1.6 1-phosphofructokinase compare
IAI47_07955 -0.7 -1.5 protein DsrB compare
IAI47_07905 -0.7 -0.4 Arc family DNA-binding protein compare
IAI47_15415 -0.7 -2.7 aminoacyl-tRNA hydrolase compare
IAI47_02455 -0.7 -4.6 ribonuclease G compare
IAI47_21595 -0.7 -4.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_11670 -0.7 -2.3 type VI secretion system protein TssA compare
IAI47_14275 -0.7 -2.9 GPW/gp25 family protein compare
IAI47_09895 -0.7 -2.2 GNAT family N-acetyltransferase compare
IAI47_17120 -0.7 -1.6 BolA family iron metabolism protein IbaG compare
IAI47_08615 -0.7 -2.3 phage baseplate assembly protein V compare
IAI47_14205 -0.7 -2.3 hypothetical protein compare
IAI47_18420 -0.7 -4.2 class I adenylate cyclase compare
IAI47_12775 -0.7 -3.9 YcbK family protein compare
IAI47_15235 -0.7 -2.0 hydroxyisourate hydrolase compare
IAI47_07450 -0.7 -1.4 winged helix-turn-helix domain-containing protein compare
IAI47_04830 -0.7 -2.4 autonomous glycyl radical cofactor GrcA compare
IAI47_21680 -0.7 -2.1 hypothetical protein compare
IAI47_11410 -0.7 -4.3 hypothetical protein compare
IAI47_05665 -0.7 -1.9 hypothetical protein compare
IAI47_04950 -0.7 -3.9 nitrogen regulatory protein P-II compare
IAI47_00870 -0.7 -0.5 50S ribosomal protein L31 compare
IAI47_07520 -0.7 -4.1 MobA/MobL family protein compare
IAI47_06425 -0.7 -3.7 GNAT family N-acetyltransferase compare
IAI47_13925 -0.7 -0.8 tRNA-Met compare
IAI47_13155 -0.7 -0.8 H-NS histone family protein compare
IAI47_19245 -0.7 -1.8 SIS domain-containing protein compare
IAI47_15150 -0.7 -3.6 DUF3289 family protein compare
IAI47_21675 -0.6 -2.4 helix-turn-helix domain-containing protein compare
IAI47_11890 -0.6 -3.0 DUF1493 family protein compare
IAI47_14545 -0.6 -1.9 hypothetical protein compare
IAI47_19935 -0.6 -2.3 hypothetical protein compare
IAI47_11505 -0.6 -2.3 hypothetical protein compare
IAI47_13745 -0.6 -2.0 2-oxoglutarate dehydrogenase E1 component compare
IAI47_02260 -0.6 -2.6 Zn(2+)-responsive transcriptional regulator compare
IAI47_06585 -0.6 -3.0 16S rRNA pseudouridine(516) synthase RsuA compare
IAI47_15670 -0.6 -4.3 acyltransferase family protein compare
IAI47_10105 -0.6 -3.3 RpiB/LacA/LacB family sugar-phosphate isomerase compare
IAI47_11655 -0.6 -1.1 hypothetical protein compare
IAI47_12305 -0.6 -3.3 hypothetical protein compare
IAI47_03680 -0.6 -3.9 transketolase compare
IAI47_01535 -0.6 -2.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_10430 -0.6 -1.0 hypothetical protein compare
IAI47_12060 -0.6 -1.8 beta-ketoacyl-ACP synthase II compare
IAI47_07510 -0.6 -2.3 hypothetical protein compare
IAI47_11635 -0.6 -1.6 hypothetical protein compare
IAI47_01015 -0.6 -2.1 ilv operon leader peptide compare
IAI47_09825 -0.6 -2.7 xanthine dehydrogenase accessory protein XdhC compare
IAI47_16195 -0.6 -3.7 transaldolase compare
IAI47_09090 -0.6 -3.2 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
IAI47_17315 -0.6 -3.8 FxsA family protein compare
IAI47_02255 -0.6 -3.6 DUF1992 domain-containing protein compare
IAI47_03445 -0.6 -2.8 ferritin-like domain-containing protein compare
IAI47_10075 -0.6 -2.8 enolase compare
IAI47_02600 -0.6 -4.0 FtsH protease activity modulator HflK compare
IAI47_20465 -0.6 -3.7 Gfo/Idh/MocA family oxidoreductase compare
IAI47_21015 -0.6 -1.6 helix-turn-helix transcriptional regulator compare
IAI47_07165 -0.6 -0.9 exodeoxyribonuclease I compare
IAI47_11895 -0.6 -3.3 glycosyltransferase family 9 protein compare
IAI47_12770 -0.6 -2.8 MBL fold metallo-hydrolase compare
IAI47_19490 -0.6 -2.4 DUF4102 domain-containing protein compare
IAI47_04695 -0.6 -2.2 hypothetical protein compare
IAI47_15635 -0.6 -1.3 RNA polymerase-binding protein DksA compare
IAI47_00770 -0.6 -0.5 general stress protein compare
IAI47_14170 -0.6 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 across organisms