Experiment set7IT063 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50

200 most detrimental genes:

  gene name fitness t score description  
IAI47_06355 +7.6 29.2 transcriptional regulator LrhA compare
IAI47_12570 +4.8 11.8 tRNA-Ser compare
IAI47_04450 +2.2 2.9 tRNA-Ala compare
IAI47_21035 +2.1 3.1 TetR/AcrR family transcriptional regulator compare
IAI47_18145 +1.9 1.6 elongation factor Tu compare
IAI47_05520 +1.9 2.6 tRNA-Ala compare
IAI47_06940 +1.9 2.3 tyrosine-protein kinase Wzc compare
IAI47_20850 +1.8 4.3 TetR/AcrR family transcriptional regulator compare
IAI47_08655 +1.7 7.4 transcriptional regulator BetI compare
IAI47_10825 +1.7 3.3 tRNA-Val compare
IAI47_10845 +1.7 5.8 major outer membrane lipoprotein compare
IAI47_18595 +1.7 10.9 endoglucanase compare
IAI47_13570 +1.6 1.5 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_14695 +1.6 5.3 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_07250 +1.6 3.3 tRNA-Asn compare
IAI47_06790 +1.5 5.7 alkyl hydroperoxide reductase subunit C compare
IAI47_19875 +1.5 6.3 TetR/AcrR family transcriptional regulator compare
IAI47_04865 +1.4 1.3 SoxR-reducing system protein RseC compare
IAI47_02350 +1.4 2.1 tRNA-Thr compare
IAI47_08000 +1.4 7.0 flagellar basal body-associated protein FliL compare
IAI47_20505 +1.3 5.4 type II toxin-antitoxin system PrlF family antitoxin compare
IAI47_19710 +1.3 5.0 helix-turn-helix transcriptional regulator compare
IAI47_08010 +1.3 7.8 flagella biosynthesis chaperone FliJ compare
IAI47_19780 +1.3 3.7 TetR/AcrR family transcriptional regulator compare
IAI47_07885 +1.3 1.9 tRNA-Asn compare
IAI47_05130 +1.2 3.3 DNA-binding protein compare
IAI47_09125 +1.2 4.2 YciI family protein compare
IAI47_05810 +1.2 1.4 hypothetical protein compare
IAI47_14680 +1.2 5.0 cytochrome o ubiquinol oxidase subunit II compare
IAI47_07550 +1.2 1.6 tRNA-Asn compare
IAI47_08015 +1.2 7.5 flagellum-specific ATP synthase FliI compare
IAI47_20715 +1.2 7.0 helix-turn-helix transcriptional regulator compare
IAI47_09240 +1.2 3.7 HTH-type transcriptional regulator CysB compare
IAI47_09395 +1.1 2.7 phage shock protein PspA compare
IAI47_12645 +1.1 4.2 porin OmpA compare
IAI47_05465 +1.1 4.3 bile acid:sodium symporter compare
IAI47_11850 +1.1 1.8 hypothetical protein compare
IAI47_14965 +1.1 1.9 hypothetical protein compare
IAI47_08005 +1.1 7.1 flagellar hook-length control protein FliK compare
IAI47_10720 +1.1 5.7 transcriptional regulator SlyA compare
IAI47_13935 +1.1 1.7 tRNA-Gln compare
IAI47_08295 +1.0 7.5 flagellar motor protein MotB compare
IAI47_10925 +1.0 3.3 EAL domain-containing protein compare
IAI47_14700 +1.0 5.3 protoheme IX farnesyltransferase compare
IAI47_11535 +1.0 2.1 DcrB-related protein compare
IAI47_06780 +1.0 4.2 iron-sulfur cluster carrier protein ApbC compare
IAI47_06910 +1.0 2.8 dCTP deaminase compare
IAI47_15460 +1.0 2.4 ribonuclease HII compare
IAI47_12170 +1.0 5.7 flagellar basal body P-ring formation protein FlgA compare
IAI47_15080 +1.0 2.7 cold-shock protein compare
IAI47_08740 +1.0 3.5 DUF2627 domain-containing protein compare
IAI47_09860 +1.0 2.9 RES family NAD+ phosphorylase compare
IAI47_13700 +1.0 1.8 Tol-Pal system protein TolQ compare
IAI47_14685 +1.0 6.7 cytochrome o ubiquinol oxidase subunit I compare
IAI47_00730 +0.9 1.5 glutaredoxin 3 compare
IAI47_00130 +0.9 6.3 LacI family DNA-binding transcriptional regulator compare
IAI47_08340 +0.9 4.5 protein phosphatase CheZ compare
IAI47_05525 +0.9 1.7 tRNA-Ala compare
IAI47_08700 +0.9 4.0 RNA chaperone ProQ compare
IAI47_08145 +0.9 7.9 flagellin FliC compare
IAI47_07990 +0.9 2.5 flagellar motor switch protein FliN compare
IAI47_06480 +0.9 6.3 phosphotransferase RcsD compare
IAI47_00565 +0.9 2.0 DUF3289 family protein compare
IAI47_17475 +0.9 1.8 type VI secretion system contractile sheath small subunit compare
IAI47_07975 +0.9 3.9 flagellar biosynthesis protein FliQ compare
IAI47_00725 +0.9 3.0 rhodanese-like domain-containing protein compare
IAI47_07995 +0.8 5.2 flagellar motor switch protein FliM compare
IAI47_16390 +0.8 0.8 tRNA-Leu compare
IAI47_08290 +0.8 5.3 flagellar motor stator protein MotA compare
IAI47_12145 +0.8 5.1 flagellar basal body rod protein FlgF compare
IAI47_20245 +0.8 2.6 DUF1109 domain-containing protein compare
IAI47_12150 +0.8 6.6 flagellar hook protein FlgE compare
IAI47_10320 +0.8 0.8 Rrf2 family transcriptional regulator compare
IAI47_09325 +0.8 5.0 FdhF/YdeP family oxidoreductase compare
IAI47_08270 +0.8 2.4 trehalose-phosphatase compare
IAI47_12130 +0.8 6.2 flagellar basal body P-ring protein FlgI compare
IAI47_09185 +0.8 3.2 glutamine amidotransferase compare
IAI47_08280 +0.8 4.3 flagellar transcriptional regulator FlhD compare
IAI47_05775 +0.8 3.7 type II toxin-antitoxin system MqsA family antitoxin compare
IAI47_06360 +0.8 2.0 NADH-quinone oxidoreductase subunit A compare
IAI47_05765 +0.8 1.6 hypothetical protein compare
IAI47_05435 +0.8 2.4 hypothetical protein compare
IAI47_03640 +0.8 6.1 glycosyltransferase compare
IAI47_14930 +0.8 2.7 shikimate kinase AroL compare
IAI47_01715 +0.8 2.8 malonate decarboxylase holo-ACP synthase compare
IAI47_12155 +0.8 5.2 flagellar hook assembly protein FlgD compare
IAI47_08030 +0.8 5.6 flagellar M-ring protein FliF compare
IAI47_00670 +0.8 6.5 sugar glycosyltransferase compare
IAI47_11195 +0.8 2.7 SH3 domain-containing protein compare
IAI47_09675 +0.8 1.9 YoaK family small membrane protein compare
IAI47_12800 +0.8 2.0 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
IAI47_09440 +0.8 3.8 transcriptional regulator TyrR compare
IAI47_20765 +0.8 4.1 IclR family transcriptional regulator compare
IAI47_12760 +0.7 4.3 porin OmpF compare
IAI47_00675 +0.7 6.3 glycosyltransferase family 9 protein compare
IAI47_20760 +0.7 3.8 DUF1852 domain-containing protein compare
IAI47_12135 +0.7 5.8 flagellar basal body L-ring protein FlgH compare
IAI47_12480 +0.7 5.3 autoinducer synthase compare
IAI47_10605 +0.7 2.5 hypothetical protein compare
IAI47_05490 +0.7 2.4 tRNA-Val compare
IAI47_08330 +0.7 3.6 chemotaxis response regulator protein-glutamate methylesterase compare
IAI47_10270 +0.7 2.6 benzoate/H(+) symporter BenE family transporter compare
IAI47_04070 +0.7 1.7 flavodoxin compare
IAI47_12165 +0.7 3.9 flagellar basal body rod protein FlgB compare
IAI47_19140 +0.7 3.8 helix-turn-helix transcriptional regulator compare
IAI47_05815 +0.7 2.3 hypothetical protein compare
IAI47_06455 +0.7 2.6 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_07980 +0.7 3.6 flagellar type III secretion system pore protein FliP compare
IAI47_08845 +0.7 0.5 cell division topological specificity factor MinE compare
IAI47_07985 +0.7 2.6 flagellar biosynthetic protein FliO compare
IAI47_01275 +0.7 1.9 hypothetical protein compare
IAI47_16255 +0.7 1.7 trp operon repressor compare
IAI47_09265 +0.7 2.8 LapA family protein compare
IAI47_12085 +0.7 3.2 phosphate acyltransferase PlsX compare
IAI47_08445 +0.7 0.8 Holliday junction branch migration protein RuvA compare
IAI47_08745 +0.7 0.9 transcription antiterminator/RNA stability regulator CspE compare
IAI47_08910 +0.7 2.9 DUF1480 family protein compare
IAI47_00300 +0.7 1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_03630 +0.7 1.6 SprT family zinc-dependent metalloprotease compare
IAI47_07775 +0.7 2.1 phosphonate C-P lyase system protein PhnK compare
IAI47_15645 +0.7 2.7 polynucleotide adenylyltransferase PcnB compare
IAI47_19430 +0.7 2.0 GNAT family N-acetyltransferase compare
IAI47_06680 +0.7 2.6 LysR family transcriptional regulator compare
IAI47_03765 +0.7 2.3 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_09020 +0.7 4.0 patatin-like phospholipase RssA compare
IAI47_20540 +0.7 1.1 TetR/AcrR family transcriptional regulator compare
IAI47_11600 +0.7 1.8 protein of avirulence locus ImpE compare
IAI47_15815 +0.7 2.9 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
IAI47_09550 +0.7 2.7 hypothetical protein compare
IAI47_00855 +0.7 1.4 cell division protein FtsN compare
IAI47_10230 +0.7 3.0 dipeptidase compare
IAI47_12160 +0.7 4.3 flagellar basal body rod protein FlgC compare
IAI47_12125 +0.7 4.4 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_11730 +0.7 2.4 molecular chaperone compare
IAI47_05305 +0.6 2.6 ArsC family reductase compare
IAI47_14690 +0.6 3.8 cytochrome o ubiquinol oxidase subunit III compare
IAI47_00660 +0.6 4.5 putative lipopolysaccharide heptosyltransferase III compare
IAI47_09490 +0.6 2.9 DUF333 domain-containing protein compare
IAI47_21450 +0.6 0.7 general stress protein compare
IAI47_05185 +0.6 2.0 uracil phosphoribosyltransferase compare
IAI47_20630 +0.6 3.0 DUF2534 family protein compare
IAI47_03645 +0.6 5.5 O-antigen ligase family protein compare
IAI47_11735 +0.6 1.5 histidinol-phosphatase compare
IAI47_11605 +0.6 2.5 hypothetical protein compare
IAI47_09720 +0.6 3.4 TetR/AcrR family transcriptional regulator compare
IAI47_13840 +0.6 2.1 replication initiation negative regulator SeqA compare
IAI47_10680 +0.6 3.2 TetR/AcrR family transcriptional regulator compare
IAI47_03665 +0.6 2.0 agmatinase compare
IAI47_15975 +0.6 2.3 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_06250 +0.6 3.3 DedA family protein compare
IAI47_02385 +0.6 4.5 tRNA dihydrouridine synthase DusB compare
IAI47_21805 +0.6 2.1 GNAT family N-acetyltransferase compare
IAI47_08025 +0.6 3.3 flagellar motor switch protein FliG compare
IAI47_01380 +0.6 1.3 hypothetical protein compare
IAI47_08350 +0.6 3.9 flagellar biosynthesis protein FlhA compare
IAI47_19420 +0.6 3.6 MurR/RpiR family transcriptional regulator compare
IAI47_12140 +0.6 3.5 flagellar basal-body rod protein FlgG compare
IAI47_16490 +0.6 1.5 PTS sugar transporter subunit IIA compare
IAI47_08460 +0.6 3.2 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_13185 +0.6 3.3 outer membrane protein OmpX compare
IAI47_02775 +0.6 1.5 glycine dehydrogenase compare
IAI47_07540 +0.6 3.5 hypothetical protein compare
IAI47_21640 +0.6 2.3 sigma-70 family RNA polymerase sigma factor compare
IAI47_14075 +0.6 1.7 transcription antiterminator/RNA stability regulator CspE compare
IAI47_03490 +0.6 1.9 hypothetical protein compare
IAI47_08035 +0.6 1.1 flagellar hook-basal body complex protein FliE compare
IAI47_18490 +0.6 1.3 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI47_17150 +0.6 2.5 hypothetical protein compare
IAI47_12180 +0.6 2.6 flagellar export chaperone FlgN compare
IAI47_19600 +0.6 1.8 ABC transporter ATP-binding protein compare
IAI47_17910 +0.6 1.5 chorismate lyase compare
IAI47_15040 +0.6 2.7 LysR family transcriptional regulator compare
IAI47_13180 +0.6 3.1 manganese-binding transcriptional regulator MntR compare
IAI47_16015 +0.6 1.9 3-isopropylmalate dehydratase small subunit compare
IAI47_05865 +0.6 2.7 hypothetical protein compare
IAI47_20755 +0.6 3.1 methionine synthase compare
IAI47_19275 +0.6 2.1 DMT family transporter compare
IAI47_13480 +0.6 1.1 molybdopterin synthase sulfur carrier subunit compare
IAI47_12915 +0.6 2.9 leucine-responsive transcriptional regulator Lrp compare
IAI47_21125 +0.6 1.9 metalloregulator ArsR/SmtB family transcription factor compare
IAI47_16955 +0.6 3.2 N-acetyltransferase compare
IAI47_00290 +0.6 1.5 F0F1 ATP synthase subunit I compare
IAI47_06145 +0.6 2.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
IAI47_20380 +0.6 3.4 diaminobutyrate--2-oxoglutarate transaminase compare
IAI47_07700 +0.6 1.3 EAL domain-containing protein compare
IAI47_13070 +0.6 2.7 GrxA family glutaredoxin compare
IAI47_21310 +0.5 3.4 helix-turn-helix domain-containing protein compare
IAI47_05270 +0.5 3.2 outer membrane protein assembly factor BamC compare
IAI47_10265 +0.5 2.0 helix-turn-helix domain-containing protein compare
IAI47_05780 +0.5 3.1 hypothetical protein compare
IAI47_20500 +0.5 2.6 type II toxin-antitoxin system YhaV family toxin compare
IAI47_05295 +0.5 1.5 YpfN family protein compare
IAI47_14495 +0.5 1.4 hypothetical protein compare
IAI47_13755 +0.5 2.4 succinate dehydrogenase flavoprotein subunit compare
IAI47_17000 +0.5 3.8 lipoprotein NlpI compare
IAI47_19460 +0.5 3.0 LysR family transcriptional regulator compare
IAI47_08465 +0.5 3.0 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_08020 +0.5 2.4 flagellar assembly protein FliH compare
IAI47_09390 +0.5 2.9 phage shock protein operon transcriptional activator compare
IAI47_04590 +0.5 1.3 ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 across organisms