Experiment set7IT063 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Varel_Bryant medium with Tetrazolium violet 0.025 mM

200 most detrimental genes:

  gene name fitness t score description  
BT0376 +1.6 2.7 putative transcriptional regulator (NCBI ptt file) compare
BT0937 +1.4 3.4 hypothetical protein (NCBI ptt file) compare
BT2281 +1.3 2.6 hypothetical protein (NCBI ptt file) compare
BT0844 +1.3 1.6 hypothetical protein (NCBI ptt file) compare
BT3642 +1.3 9.3 Na+-dependent transporter (NCBI ptt file) compare
BT1951 +1.2 2.6 Fe3+ ABC transporter, permease protein (NCBI ptt file) compare
BT0582 +1.2 2.5 conserved hypothetical protein (NCBI ptt file) compare
BT4698 +1.2 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0223 +1.1 3.3 two-component system response regulator (NCBI ptt file) compare
BT2059 +1.1 1.3 TonB (NCBI ptt file) compare
BT2490 +1.0 2.0 hypothetical protein (NCBI ptt file) compare
BT2042 +1.0 2.0 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT0603 +1.0 2.4 conserved hypothetical protein (NCBI ptt file) compare
BT0696 +1.0 3.4 putative membrane protein (NCBI ptt file) compare
BT2537 +1.0 3.2 hypothetical protein (NCBI ptt file) compare
BT0437 +0.9 1.4 N-acylglucosamine 2-epimerase (NCBI ptt file) compare
BT0896 +0.9 1.9 putative patatin-like phospholipase (NCBI ptt file) compare
BT4774 +0.9 2.3 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1808 +0.9 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1107 +0.9 1.6 ferritin A (NCBI ptt file) compare
BT1544 +0.9 3.4 NADH pyrophosphatase, MutT family hydrolase (NCBI ptt file) compare
BT1295 +0.8 1.9 V-type sodium ATP synthase subunit K (NCBI ptt file) compare
BT1426 +0.8 2.5 conserved hypothetical protein (NCBI ptt file) compare
BT0885 +0.8 1.7 putative cation efflux pump (NCBI ptt file) compare
BT1958 +0.8 2.5 hypothetical protein (NCBI ptt file) compare
BT0106 +0.8 3.2 conserved hypothetical protein (NCBI ptt file) compare
BT1580 +0.8 2.1 lactoylglutathione lyase (NCBI ptt file) compare
BT0799 +0.8 1.3 hypothetical protein (NCBI ptt file) compare
BT4469 +0.8 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT0985 +0.8 1.9 putative sialic acid-specific acetylesterase II (NCBI ptt file) compare
BT1366 +0.8 2.8 hypothetical protein (NCBI ptt file) compare
BT1641 +0.7 1.4 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT0121 +0.7 2.1 transcriptional regulator, ArsR family (NCBI ptt file) compare
BT1169 +0.7 1.4 hypothetical protein (NCBI ptt file) compare
BT1982 +0.7 1.5 hypothetical protein (NCBI ptt file) compare
BT0400 +0.7 1.7 putative tyrosine-protein kinase in capsular polysaccharide biosynthesis region (NCBI ptt file) compare
BT1424 +0.7 2.6 hypothetical protein (NCBI ptt file) compare
BT3481 +0.7 2.0 putative glutaminase A (NCBI ptt file) compare
BT0817 +0.7 1.7 lipoprotein, function unknown (NCBI ptt file) compare
BT1338 +0.7 2.1 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) compare
BT3022 +0.7 1.2 hypothetical protein (NCBI ptt file) compare
BT0876 +0.7 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1462 +0.7 2.6 hypothetical protein (NCBI ptt file) compare
BT3839 +0.7 1.1 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0839 +0.7 2.0 hypothetical protein (NCBI ptt file) compare
BT0389 +0.7 1.8 putative galactoside acetyltransferase (NCBI ptt file) compare
BT1316 +0.7 1.4 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT1072 +0.7 1.2 hypothetical protein (NCBI ptt file) compare
BT0427 +0.7 1.2 xanthine phosphoribosyltransferase (NCBI ptt file) compare
BT0984 +0.7 2.8 hypothetical protein (NCBI ptt file) compare
BT4027 +0.7 1.2 hypothetical protein (NCBI ptt file) compare
BT1369 +0.6 1.2 hypothetical protein (NCBI ptt file) compare
BT1737 +0.6 4.0 conserved hypothetical protein, putative secreted protein (NCBI ptt file) compare
BT3643 +0.6 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT0857 +0.6 2.2 outer membrane protein TolC, putative (NCBI ptt file) compare
BT1524 +0.6 1.2 hypothetical protein (NCBI ptt file) compare
BT0925 +0.6 1.5 ABC transporter, ATP-binding protein (NCBI ptt file) compare
BT2236 +0.6 0.8 conserved hypothetical protein (NCBI ptt file) compare
BT4524 +0.6 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0884 +0.6 2.5 outer membrane efflux protein oprM precursor (NCBI ptt file) compare
BT0678 +0.6 1.6 cation efflux system protein czcC (NCBI ptt file) compare
BT1534 +0.6 1.2 hypothetical protein (NCBI ptt file) compare
BT1256 +0.6 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT0393 +0.6 1.5 serine acetyltransferase (NCBI ptt file) compare
BT0462 +0.6 1.9 putative transcriptional regulator (NCBI ptt file) compare
BT1766 +0.6 3.7 putative ribonucleoprotein-related protein (NCBI ptt file) compare
BT1255 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
BT0599 +0.6 2.5 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
BT1473 +0.6 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0689 +0.6 2.3 putative two-component system sensor histidine kinase (NCBI ptt file) compare
BT1793 +0.6 1.7 integrase protein (NCBI ptt file) compare
BT1431 +0.6 2.2 putative DNA polymerase III epsilon chain (NCBI ptt file) compare
BT2944 +0.6 3.0 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT3264 +0.6 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT4513 +0.6 2.4 putative rRNA methylase (NCBI ptt file) compare
BT1976 +0.6 0.8 hypothetical protein (NCBI ptt file) compare
BT0978 +0.6 2.4 ECF-type sigma factor (NCBI ptt file) compare
BT0432 +0.6 2.3 putative endonuclease BB0411 (NCBI ptt file) compare
BT1535 +0.6 1.4 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT1117 +0.6 1.3 conserved hypothetical protein, with a cAMP-binding domain (NCBI ptt file) compare
BT4753 +0.6 1.4 hypothetical protein (NCBI ptt file) compare
BT1933 +0.6 1.6 transposase (NCBI ptt file) compare
BT0877 +0.6 1.3 ferredoxin domain containing protein (NCBI ptt file) compare
BT4166 +0.6 3.9 putative lipoprotein (NCBI ptt file) compare
BT0473 +0.6 2.1 putative glycosyltransferase (NCBI ptt file) compare
BT0395 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
BT4447 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT4598 +0.6 2.1 hypothetical protein (NCBI ptt file) compare
BT1557 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT2931 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT0475 +0.5 1.2 putative phosphoheptose isomerase (NCBI ptt file) compare
BT4762 +0.5 1.1 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT4676 +0.5 1.7 putative periplasmic protein (NCBI ptt file) compare
BT1088 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT0157 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT1915 +0.5 2.3 pyruvate carboxylase subunit A (NCBI ptt file) compare
BT1946 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT3981 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
BT3510 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT1680 +0.5 1.2 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT0327 +0.5 1.1 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) (NCBI ptt file) compare
BT1704 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT0518 +0.5 1.9 Bifunctional purine biosynthesis protein, putative 5-aminoimidazole-4-carboxamide ribonucleotide(AICAR) transformylase/IMP cyclohydrolase (NCBI ptt file) compare
BT0214 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT0004 +0.5 1.3 hypothetical protein (NCBI ptt file) compare
BT2684 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
p5482_14 +0.5 2.6 hypothetical protein (NCBI) compare
BT1044 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
BT1409 +0.5 3.0 conserved hypothetical protein (NCBI ptt file) compare
BT4381 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT0782 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT1093 +0.5 1.8 conserved hypothetical protein, putative TonB-dependent outer membrane receptor protein (NCBI ptt file) compare
BT3127 +0.5 2.4 conserved hypothetical protein (NCBI ptt file) compare
BT4773 +0.5 1.5 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT0043 +0.5 1.4 putative glycosyltransferase (NCBI ptt file) compare
BT0618 +0.5 0.6 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfC (NCBI ptt file) compare
BT2037 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT2099 +0.5 2.3 Fe3+ ABC transporter, permease (NCBI ptt file) compare
BT1235 +0.5 2.1 AraC-type transcription regulator (NCBI ptt file) compare
BT4452 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT_t17 pseudo-tRNA +0.5 1.3 tRNA-OTHER (RefSeq) compare
BT3641 +0.5 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT4482 +0.5 2.4 conserved hypothetical protein (NCBI ptt file) compare
BT1679 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT1263 +0.5 0.7 putative protease I (NCBI ptt file) compare
BT0795 +0.5 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT0949 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT0378 +0.5 1.0 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) compare
BT1441 +0.5 2.3 hypothetical protein (NCBI ptt file) compare
BT0679 +0.5 0.8 cation efflux system protein czcB (NCBI ptt file) compare
BT0841 +0.5 2.1 hypothetical protein (NCBI ptt file) compare
BT1912 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT4735 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT3241 +0.5 3.8 hypothetical protein (NCBI ptt file) compare
BT0610 +0.5 2.4 lipopolysaccharide biosynthesis protein, putative glycosyltransferase (NCBI ptt file) compare
BT1250 +0.5 1.6 conserved hypothetical protein, putative outer membrane efflux protein (NCBI ptt file) compare
BT0796 +0.5 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT3232 +0.5 0.8 gluconate 5-dehydrogenase (NCBI ptt file) compare
BT1873 +0.5 1.9 endo-arabinase (NCBI ptt file) compare
BT0170 +0.5 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT0151 +0.4 0.5 hypothetical protein (NCBI ptt file) compare
BT1518 +0.4 1.9 hypothetical protein (NCBI ptt file) compare
BT0917 +0.4 1.4 competence-damage inducible protein (NCBI ptt file) compare
BT1656 +0.4 1.0 putative transcriptional regulator (NCBI ptt file) compare
BT4501 +0.4 1.5 ribosomal large subunit pseudouridine synthase A (NCBI ptt file) compare
BT1186 +0.4 1.1 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0572 +0.4 0.6 conserved hypothetical protein (NCBI ptt file) compare
BT2237 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT1279 +0.4 1.9 putative anti-sigma factor (NCBI ptt file) compare
BT1589 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
BT3891 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
BT1240 +0.4 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT1376 +0.4 0.9 putative ATP-binding protein involved in cell division (NCBI ptt file) compare
BT4493 +0.4 1.8 putative sugar nucleotide epimerase (NCBI ptt file) compare
BT0850 +0.4 1.7 putative transcriptional regulator (NCBI ptt file) compare
BT0846 +0.4 0.8 hypothetical protein (NCBI ptt file) compare
BT3772 +0.4 0.8 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) compare
BT0674 +0.4 1.0 carboxynorspermidine decarboxylase (NCBI ptt file) compare
BT0828 +0.4 0.9 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) compare
BT2973 +0.4 1.4 transcriptional regulator (NCBI ptt file) compare
BT2174 +0.4 1.9 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT4608 +0.4 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1081 +0.4 0.9 recombination protein recR (NCBI ptt file) compare
BT_0687 +0.4 1.7 hydroxylamine reductase (RefSeq) compare
BT1740 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
BT3824 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
BT4725 +0.4 1.7 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) compare
BT0490 +0.4 0.6 hypothetical protein (NCBI ptt file) compare
BT4034 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
BT1367 +0.4 1.0 hydrolase, metal-dependent (NCBI ptt file) compare
BT4202 +0.4 1.8 hypothetical protein (NCBI ptt file) compare
BT3716 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT4653 +0.4 2.0 glucose/galactose transporter (NCBI ptt file) compare
BT0388 +0.4 1.8 galactoside O-acetyltransferase (NCBI ptt file) compare
BT0946 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
BT0256 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
BT1373 +0.4 1.6 ferritin A (NCBI ptt file) compare
BT1881 +0.4 1.5 purine nucleoside phosphorylase I (NCBI ptt file) compare
BT3443 +0.4 1.6 conserved hypothetical protein with a conserved domain (NCBI ptt file) compare
BT4478 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
BT3215 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT2066 +0.4 1.7 putative oxidoreductase (NCBI ptt file) compare
BT4559 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0008 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT4679 +0.4 2.0 Mg2+/Co2+ transport protein (NCBI ptt file) compare
BT4486 +0.4 1.7 voltage-gated K+ channel protein (NCBI ptt file) compare
BT3881 +0.4 1.9 hypothetical protein (NCBI ptt file) compare
BT0658 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
BT3608 +0.4 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT4327 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
BT0635 +0.4 0.8 putative transcriptional regulator (NCBI ptt file) compare
BT3457 +0.4 1.3 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT2225 +0.4 2.1 hypothetical protein (NCBI ptt file) compare
BT2178 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
BT1146 +0.4 1.2 putative metallo-beta-lactamase (NCBI ptt file) compare
BT1015 +0.4 1.9 putative oxidoreductase (NCBI ptt file) compare
BT4732 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1423 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT2520 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT0510 +0.4 1.5 putative heme biosynthesis protein (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in stress experiments

For stress Tetrazolium violet across organisms