Experiment set7IT062 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
Xcc-8004.1615.1 -4.9 -2.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.4844.1 -4.3 -1.2 FIG01210764: hypothetical protein compare
Xcc-8004.4039.1 -3.8 -3.7 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.4200.1 -3.8 -3.1 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.1241.1 -3.4 -6.2 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.3976.1 -3.3 -4.3 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1436.1 -3.0 -2.0 Holliday junction DNA helicase RuvA compare
Xcc-8004.3451.1 -2.9 -2.6 hypothetical protein compare
Xcc-8004.3054.1 -2.8 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.726.1 -2.8 -1.1 Putative preQ0 transporter compare
Xcc-8004.2346.1 -2.8 -2.3 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.3479.1 -2.7 -2.3 aklaviketone reductase compare
Xcc-8004.3346.1 -2.7 -2.6 hypothetical protein compare
Xcc-8004.3728.1 -2.7 -1.9 hypothetical protein compare
Xcc-8004.4292.1 -2.6 -2.7 Taurine transport ATP-binding protein TauB compare
Xcc-8004.3120.1 -2.6 -3.5 RNA-binding protein Hfq compare
Xcc-8004.585.1 -2.5 -2.1 Na(+) H(+) antiporter subunit F compare
Xcc-8004.130.1 -2.5 -7.3 hypothetical protein compare
Xcc-8004.1619.1 -2.5 -1.8 PspA/IM30 family protein compare
Xcc-8004.4620.1 -2.5 -8.0 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.837.1 -2.5 -2.4 FIG01210690: hypothetical protein compare
Xcc-8004.4510.1 -2.5 -1.7 ATP binding component of ABC-transporter compare
Xcc-8004.2922.1 -2.4 -2.3 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.623.1 -2.4 -2.1 Phosphoserine phosphatase compare
Xcc-8004.574.1 -2.3 -7.9 Di-/tripeptide transporter compare
Xcc-8004.1137.1 -2.3 -1.8 FIG006231: RNA-binding protein compare
Xcc-8004.1372.1 -2.3 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.171.1 -2.2 -1.2 hypothetical protein compare
Xcc-8004.3703.1 -2.2 -1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2923.1 -2.2 -8.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.3979.1 -2.1 -7.6 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.2182.1 -2.1 -9.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.127.1 -2.1 -2.0 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.4373.1 -2.1 -3.9 LppC putative lipoprotein compare
Xcc-8004.2343.1 -2.1 -2.0 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.1229.1 -2.1 -3.3 hypothetical protein compare
Xcc-8004.3676.1 -2.0 -2.9 Translation elongation factor LepA compare
Xcc-8004.3723.1 -2.0 -2.4 hypothetical protein compare
Xcc-8004.3742.1 -2.0 -2.5 Type III effector compare
Xcc-8004.2011.1 -2.0 -1.3 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.288.1 -2.0 -1.3 Ferredoxin compare
Xcc-8004.236.1 -2.0 -1.2 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.1727.1 -2.0 -2.7 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.2713.1 -1.9 -1.2 Nitrate/nitrite transporter compare
Xcc-8004.1236.1 -1.9 -5.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1164.1 -1.9 -1.5 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.659.1 -1.9 -2.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2356.1 -1.8 -3.3 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.3473.1 -1.8 -1.7 FIG01213437: hypothetical protein compare
Xcc-8004.2012.1 -1.8 -5.0 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.4810.1 -1.7 -8.8 hypothetical protein compare
Xcc-8004.1809.1 -1.7 -1.5 extracellular serine protease compare
Xcc-8004.1359.1 -1.7 -4.1 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4000.1 -1.7 -2.5 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.3310.1 -1.6 -3.8 Chromosome partition protein smc compare
Xcc-8004.914.1 -1.6 -6.6 tail-specific protease compare
Xcc-8004.4499.1 -1.6 -2.2 Mobile element protein compare
Xcc-8004.1747.1 -1.6 -3.2 FIG01210249: hypothetical protein compare
Xcc-8004.1718.1 -1.6 -1.7 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.1135.1 -1.6 -2.3 FIG01210448: hypothetical protein compare
Xcc-8004.1763.1 -1.6 -1.5 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.1822.1 -1.6 -1.4 Transcriptional regulator, MarR family compare
Xcc-8004.1521.1 -1.6 -1.3 FIG01209895: hypothetical protein compare
Xcc-8004.1133.1 -1.5 -1.5 Rubredoxin compare
Xcc-8004.1873.1 -1.5 -1.9 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.3211.1 -1.5 -2.2 protein of unknown function DUF88 compare
Xcc-8004.2958.1 -1.5 -2.1 tryptophan-rich sensory protein compare
Xcc-8004.1244.1 -1.5 -4.9 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.3815.1 -1.4 -1.9 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.1266.1 -1.4 -2.9 hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] compare
Xcc-8004.2559.1 -1.4 -2.0 hypothetical protein compare
Xcc-8004.459.1 -1.4 -1.4 4-hydroxybenzoate transporter compare
Xcc-8004.4001.1 -1.4 -2.1 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.601.1 -1.4 -3.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.5125.1 -1.4 -3.4 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.3698.1 -1.4 -1.4 hypothetical protein compare
Xcc-8004.4168.1 -1.4 -3.0 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.645.1 -1.4 -1.2 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.3812.1 -1.3 -2.8 DNA repair protein RadA compare
Xcc-8004.4568.1 -1.3 -1.4 FIG01210028: hypothetical protein compare
Xcc-8004.3816.1 -1.3 -4.7 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.3281.1 -1.3 -4.3 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.2372.1 -1.3 -4.2 Pheromone shutdown protein compare
Xcc-8004.1515.1 -1.3 -1.8 hypothetical protein compare
Xcc-8004.812.1 -1.3 -2.7 histidine kinase-response regulator hybrid protein compare
Xcc-8004.1720.1 -1.3 -1.8 UPF0301 protein YqgE compare
Xcc-8004.409.1 -1.3 -2.0 hypothetical protein compare
Xcc-8004.564.1 -1.3 -1.4 Mobile element protein compare
Xcc-8004.1316.1 -1.3 -1.6 hypothetical protein compare
Xcc-8004.4170.1 -1.3 -1.7 LSU ribosomal protein L25p compare
Xcc-8004.3752.1 -1.3 -1.0 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.4441.1 -1.3 -3.0 Tyrosine recombinase XerD compare
Xcc-8004.4526.1 -1.2 -5.9 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.3608.1 -1.2 -1.8 FIG024285: Hypothetical protein compare
Xcc-8004.2217.1 -1.2 -2.4 FIG01209779: hypothetical protein compare
Xcc-8004.2422.1 -1.2 -2.4 Putative stress-responsive transcriptional regulator compare
Xcc-8004.957.1 -1.2 -3.5 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.1880.1 -1.2 -4.5 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Xcc-8004.234.1 -1.2 -6.5 cardiolipin synthase compare
Xcc-8004.2412.1 -1.2 -6.4 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.1621.1 -1.2 -4.2 FIG01213569: hypothetical protein compare
Xcc-8004.3955.1 -1.2 -3.4 HflK protein compare
Xcc-8004.2335.1 -1.2 -3.2 Transport ATP-binding protein CydC compare
Xcc-8004.2921.1 -1.2 -2.2 ferrous iron transport protein compare
Xcc-8004.2924.1 -1.2 -2.6 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.361.1 -1.2 -3.3 FIG023937: hypothetical protein in ureide degradation cluster compare
Xcc-8004.944.1 -1.2 -1.6 General secretion pathway protein F compare
Xcc-8004.5214.1 -1.2 -3.9 sal operon transcriptional repressor compare
Xcc-8004.1841.1 -1.2 -2.5 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.4457.1 -1.2 -2.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.5021.1 -1.2 -1.4 FIG01211474: hypothetical protein compare
Xcc-8004.791.1 -1.2 -1.7 FIG01211375: hypothetical protein compare
Xcc-8004.811.1 -1.1 -3.4 FIG01211260: hypothetical protein compare
Xcc-8004.4313.1 -1.1 -2.1 hypothetical protein compare
Xcc-8004.787.1 -1.1 -0.8 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.1064.1 -1.1 -1.3 hypothetical protein compare
Xcc-8004.5365.1 -1.1 -4.0 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.5334.1 -1.1 -1.7 hypothetical protein compare
Xcc-8004.3647.1 -1.1 -2.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.251.1 -1.1 -2.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Xcc-8004.319.1 -1.1 -5.9 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Xcc-8004.1226.1 -1.1 -1.4 FIG01210021: hypothetical protein compare
Xcc-8004.2411.1 -1.1 -3.4 Small-conductance mechanosensitive channel compare
Xcc-8004.2015.1 -1.1 -2.9 Short chain dehydrogenase compare
Xcc-8004.318.1 -1.1 -4.5 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Xcc-8004.1622.1 -1.1 -2.1 Membrane protein with DUF350 domain compare
Xcc-8004.118.1 -1.1 -2.3 FIG037995: Hypothetical protein compare
Xcc-8004.892.1 -1.1 -2.1 Coupling protein VirD4, ATPase required for T-DNA transfer compare
Xcc-8004.1919.1 -1.1 -4.1 FIG056164: rhomboid family serine protease compare
Xcc-8004.3981.1 -1.0 -2.9 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.4221.1 -1.0 -3.1 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Xcc-8004.4693.1 -1.0 -1.0 hypothetical protein compare
Xcc-8004.1058.1 -1.0 -1.8 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.1768.1 -1.0 -1.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.4491.1 -1.0 -3.5 Glycosyltransferase compare
Xcc-8004.4430.1 -1.0 -1.1 General secretion pathway protein G compare
Xcc-8004.4836.1 -1.0 -2.7 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.4625.1 -1.0 -2.3 FIG01210439: hypothetical protein compare
Xcc-8004.3663.1 -1.0 -2.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.3687.1 -1.0 -2.7 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) compare
Xcc-8004.4465.1 -1.0 -2.8 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.3954.1 -1.0 -2.3 HflC protein compare
Xcc-8004.4013.1 -1.0 -1.1 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.5203.1 -1.0 -0.8 Twin-arginine translocation protein TatB compare
Xcc-8004.1838.1 -1.0 -0.9 FIG002958: hypothetical protein compare
Xcc-8004.3633.1 -1.0 -4.3 FIG01210834: hypothetical protein compare
Xcc-8004.2259.1 -1.0 -3.0 PhbF compare
Xcc-8004.4596.1 -1.0 -4.4 hypothetical protein compare
Xcc-8004.1196.1 -0.9 -2.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.2930.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.4049.1 -0.9 -2.4 Cell division trigger factor (EC 5.2.1.8) compare
Xcc-8004.4046.1 -0.9 -3.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.3402.1 -0.9 -1.4 FIG01210246: hypothetical protein compare
Xcc-8004.1962.1 -0.9 -2.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.1228.1 -0.9 -3.5 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.1450.1 -0.9 -2.8 Queuosine Biosynthesis QueC ATPase compare
Xcc-8004.4251.1 -0.9 -1.3 hypothetical protein compare
Xcc-8004.3982.1 -0.9 -3.3 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.3576.1 -0.9 -3.4 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.2614.1 -0.9 -1.9 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.1045.1 -0.9 -2.2 hypothetical protein compare
Xcc-8004.5343.1 -0.9 -2.6 hypothetical protein compare
Xcc-8004.2396.1 -0.9 -3.0 Methyl-accepting chemotaxis protein compare
Xcc-8004.3014.1 -0.9 -2.8 putative ATPase, AAA+ family protein compare
Xcc-8004.494.1 -0.9 -2.4 Threonine dehydratase, catabolic (EC 4.3.1.19) compare
Xcc-8004.1138.1 -0.9 -2.4 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Xcc-8004.1776.1 -0.9 -2.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.2910.1 -0.9 -1.8 Regulatory protein, RpfE type compare
Xcc-8004.589.1 -0.9 -1.2 hypothetical protein compare
Xcc-8004.1328.1 -0.9 -1.0 FIG01210090: hypothetical protein compare
Xcc-8004.1512.1 -0.9 -1.2 RNA polymerase sigma-70 factor compare
Xcc-8004.5239.1 -0.9 -2.0 Hexuronate transporter compare
Xcc-8004.269.1 -0.9 -1.5 FIG136845: Rhodanese-related sulfurtransferase compare
Xcc-8004.53.1 -0.9 -1.7 hypothetical protein compare
Xcc-8004.4824.1 -0.9 -3.6 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1120.1 -0.9 -2.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.916.1 -0.9 -2.8 transcriptional regulator compare
Xcc-8004.3688.1 -0.9 -3.7 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
Xcc-8004.3905.1 -0.9 -2.1 Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT compare
Xcc-8004.5252.1 -0.9 -3.6 FIG01210658: hypothetical protein compare
Xcc-8004.4578.1 -0.9 -3.2 FIG048548: ATP synthase protein I2 compare
Xcc-8004.4376.1 -0.9 -2.9 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.3686.1 -0.9 -3.2 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.5407.1 -0.9 -2.1 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.1400.1 -0.9 -0.9 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.2946.1 -0.9 -2.1 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.1437.1 -0.9 -2.6 Kup system potassium uptake protein compare
Xcc-8004.280.1 -0.9 -3.1 3-oxoacyl-[ACP] synthase III in alkane synthesis cluster compare
Xcc-8004.570.1 -0.9 -5.2 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Xcc-8004.4821.1 -0.9 -1.8 FIG01209726: hypothetical protein compare
Xcc-8004.4871.1 -0.9 -1.0 Phage tail completion protein compare
Xcc-8004.4247.1 -0.9 -1.1 Transcriptional regulator, MarR family compare
Xcc-8004.924.1 -0.9 -1.3 FIG01200701: possible membrane protein compare
Xcc-8004.321.1 -0.8 -5.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Xcc-8004.1374.1 -0.8 -1.3 Lipoprotein, putative compare
Xcc-8004.3783.1 -0.8 -3.9 Two-component system sensor protein compare
Xcc-8004.1221.1 -0.8 -3.2 Ribonuclease PH (EC 2.7.7.56) compare
Xcc-8004.1108.1 -0.8 -1.0 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.3339.1 -0.8 -2.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.4446.1 -0.8 -2.3 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in agar plate interaction control experiments