Experiment set7IT061 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most detrimental genes:

  gene name fitness t score description  
Xcc-8004.1912.1 +1.7 12.2 Cell wall-associated hydrolases (invasion-associated proteins) compare
Xcc-8004.4281.1 +1.5 1.4 hypothetical protein compare
Xcc-8004.288.1 +1.5 2.7 Ferredoxin compare
Xcc-8004.3304.1 +1.3 2.2 FIG01211108: hypothetical protein compare
Xcc-8004.3587.1 +1.2 10.9 FIG01211069: hypothetical protein compare
Xcc-8004.1568.1 +1.2 2.3 Glycine cleavage system H protein compare
Xcc-8004.2449.1 +1.2 5.5 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.3991.1 +1.1 8.2 FIG004453: protein YceG like compare
Xcc-8004.528.1 +1.1 6.2 hypothetical protein compare
Xcc-8004.2842.1 +1.1 3.1 FIG01212239: hypothetical protein compare
Xcc-8004.4951.1 +1.1 1.9 FIG01210986: hypothetical protein compare
Xcc-8004.1841.1 +1.0 3.7 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) compare
Xcc-8004.4364.1 +1.0 5.0 Cell division protein MraZ compare
Xcc-8004.429.1 +1.0 1.9 hypothetical protein compare
Xcc-8004.1904.1 +1.0 1.1 two-component system regulatory protein compare
Xcc-8004.4264.1 +1.0 2.3 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
Xcc-8004.3492.1 +1.0 1.9 FIG01211425: hypothetical protein compare
Xcc-8004.1610.1 +0.9 2.4 MFS transporter compare
Xcc-8004.624.1 +0.9 4.9 Cyclic AMP receptor protein compare
Xcc-8004.4065.1 +0.9 4.8 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.2259.1 +0.9 3.0 PhbF compare
Xcc-8004.1618.1 +0.9 2.7 FIG006163: hypothetical protein compare
Xcc-8004.4323.1 +0.9 2.3 hypothetical protein compare
Xcc-8004.469.1 +0.8 5.1 Glycerol kinase (EC 2.7.1.30) compare
Xcc-8004.1085.1 +0.8 1.4 FIG01212308: hypothetical protein compare
Xcc-8004.375.1 +0.8 1.9 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
Xcc-8004.3527.1 +0.8 2.4 Transcriptional regulator, MarR family compare
Xcc-8004.3792.1 +0.8 1.3 Mobile element protein compare
Xcc-8004.564.1 +0.8 1.8 Mobile element protein compare
Xcc-8004.876.1 +0.8 1.9 Mobile element protein compare
Xcc-8004.1562.1 +0.8 2.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.2182.1 +0.8 5.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.1108.1 +0.8 2.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.4982.1 +0.8 2.4 Protein yjbJ compare
Xcc-8004.2079.1 +0.8 2.2 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.545.1 +0.7 1.5 Nucleoside-diphosphate-sugar epimerases compare
Xcc-8004.679.1 +0.7 1.3 23Sr RNA gene compare
Xcc-8004.2450.1 +0.7 6.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.3655.1 +0.7 0.9 FIG01210025: hypothetical protein compare
Xcc-8004.3608.1 +0.7 2.6 FIG024285: Hypothetical protein compare
Xcc-8004.4952.1 +0.7 5.1 transport protein compare
Xcc-8004.1752.1 +0.7 2.4 accessory protein compare
Xcc-8004.1858.1 +0.7 0.8 FIG01211170: hypothetical protein compare
Xcc-8004.5038.1 +0.7 1.5 ABC-type Na+ transport system, ATPase component compare
Xcc-8004.2888.1 +0.7 2.9 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.1776.1 +0.7 2.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Xcc-8004.4423.1 +0.7 1.2 General secretion pathway protein N compare
Xcc-8004.5161.1 +0.7 1.7 FIG01212148: hypothetical protein compare
Xcc-8004.4877.1 +0.7 6.3 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.2861.1 +0.7 1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.5185.1 +0.7 1.8 Gluconokinase (EC 2.7.1.12) compare
Xcc-8004.4253.1 +0.7 1.4 Transcriptional regulator, LysR family compare
Xcc-8004.3794.1 +0.7 1.2 Mobile element protein compare
Xcc-8004.936.1 +0.7 1.2 FIG01209778: hypothetical protein compare
Xcc-8004.3041.1 +0.6 2.1 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.1009.1 +0.6 1.5 Lysophospholipase L1 and related esterases compare
Xcc-8004.155.1 +0.6 1.4 FIG01210803: hypothetical protein compare
Xcc-8004.1795.1 +0.6 2.5 RND efflux system, outer membrane lipoprotein CmeC compare
Xcc-8004.772.1 +0.6 2.7 protease, putative compare
Xcc-8004.1666.1 +0.6 2.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) compare
Xcc-8004.1200.1 +0.6 1.2 hypothetical protein compare
Xcc-8004.2215.1 +0.6 1.0 hypothetical protein compare
Xcc-8004.4788.1 +0.6 1.2 FIG01210406: hypothetical protein compare
Xcc-8004.299.1 +0.6 1.6 Acyltransferase compare
Xcc-8004.745.1 +0.6 1.3 VirP protein compare
Xcc-8004.2563.1 +0.6 1.4 FIG01210540: hypothetical protein compare
Xcc-8004.4304.1 +0.6 2.7 FIG01210543: hypothetical protein compare
Xcc-8004.2954.1 +0.6 4.8 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.5349.1 +0.6 1.7 FIG01210492: hypothetical protein compare
Xcc-8004.1308.1 +0.6 1.4 FIG01211990: hypothetical protein compare
Xcc-8004.4327.1 +0.6 1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1172.1 +0.6 2.2 Transcriptional regulator compare
Xcc-8004.3471.1 +0.6 1.5 FIG01211539: hypothetical protein compare
Xcc-8004.3883.1 +0.6 1.9 Oxidoreductase, aldo/keto reductase family compare
Xcc-8004.3366.1 +0.6 2.3 Ribonuclease T (EC 3.1.13.-) compare
Xcc-8004.3731.1 +0.6 0.8 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.164.1 +0.6 2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2671.1 +0.6 4.2 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Xcc-8004.2055.1 +0.6 1.4 Mobile element protein compare
Xcc-8004.271.1 +0.6 1.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1221.1 +0.6 2.5 Ribonuclease PH (EC 2.7.7.56) compare
Xcc-8004.3582.1 +0.6 1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3686.1 +0.6 2.7 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
Xcc-8004.1395.1 +0.5 1.7 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Xcc-8004.1396.1 +0.5 1.4 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) / Cobyric acid synthase (EC 6.3.5.10) compare
Xcc-8004.722.1 +0.5 1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4446.1 +0.5 1.9 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.1416.1 +0.5 1.7 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.3685.1 +0.5 2.2 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Xcc-8004.4732.1 +0.5 0.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.636.1 +0.5 2.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Xcc-8004.926.1 +0.5 2.9 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Xcc-8004.4592.1 +0.5 3.2 Outer membrane protein W precursor compare
Xcc-8004.1955.1 +0.5 2.9 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.4494.1 +0.5 4.5 hypothetical protein compare
Xcc-8004.979.1 +0.5 2.8 LysR family transcriptional regulator YeiE compare
Xcc-8004.3821.1 +0.5 1.8 Lipoprotein signal peptidase (EC 3.4.23.36) compare
Xcc-8004.4675.1 +0.5 0.7 FIG01211280: hypothetical protein compare
Xcc-8004.4285.1 +0.5 3.2 two-component system sensor protein compare
Xcc-8004.2096.1 +0.5 1.9 FIG003671: Metal-dependent hydrolase compare
Xcc-8004.4520.1 +0.5 2.8 UptF protein compare
Xcc-8004.1361.1 +0.5 0.7 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.5086.1 +0.5 2.1 membrane protein, inferred for ABFAE pathway compare
Xcc-8004.3832.1 +0.5 0.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.3947.1 +0.5 2.1 FIG01210742: hypothetical protein compare
Xcc-8004.1943.1 +0.5 1.3 FIG01211831: hypothetical protein compare
Xcc-8004.1124.1 +0.5 1.3 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.1836.1 +0.5 1.9 hypothetical protein compare
Xcc-8004.1307.1 +0.5 1.7 FIG01212836: hypothetical protein compare
Xcc-8004.3941.1 +0.5 2.4 putative restriction endonuclease compare
Xcc-8004.4449.1 +0.5 2.5 hypothetical protein compare
Xcc-8004.4641.1 +0.5 1.8 Secreted and surface protein containing fasciclin-like repeats compare
Xcc-8004.946.1 +0.5 1.2 General secretion pathway protein H compare
Xcc-8004.1681.1 +0.5 2.0 hypothetical protein compare
Xcc-8004.4821.1 +0.5 1.7 FIG01209726: hypothetical protein compare
Xcc-8004.99.1 +0.5 1.0 FIG01211055: hypothetical protein compare
Xcc-8004.3884.1 +0.5 2.0 Catalase (EC 1.11.1.6) compare
Xcc-8004.3549.1 +0.5 1.8 FIG01211514: hypothetical protein compare
Xcc-8004.1026.1 +0.5 1.3 Tricarboxylate transport transcriptional regulator TctD compare
Xcc-8004.1365.1 +0.5 0.9 FIG01211058: hypothetical protein compare
Xcc-8004.2327.1 +0.5 2.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.2627.1 +0.5 0.8 Phi-Lf prophage-derived helix-destabilizing protein compare
Xcc-8004.2900.1 +0.5 1.7 response regulator compare
Xcc-8004.1097.1 +0.5 1.6 FIG01210707: hypothetical protein compare
Xcc-8004.2579.1 +0.5 1.2 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.797.1 +0.5 0.6 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Xcc-8004.1954.1 +0.5 1.5 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2214.1 +0.5 1.6 Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Xcc-8004.574.1 +0.5 2.2 Di-/tripeptide transporter compare
Xcc-8004.2495.1 +0.5 0.6 hypothetical protein compare
Xcc-8004.3130.1 +0.4 2.2 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.4072.1 +0.4 2.4 COG2833: uncharacterized protein compare
Xcc-8004.4674.1 +0.4 2.0 putative Cytochrome bd2, subunit II compare
Xcc-8004.2081.1 +0.4 1.4 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.761.1 +0.4 1.7 ThiJ/PfpI family protein compare
Xcc-8004.470.1 +0.4 3.0 Glycerol uptake facilitator protein compare
Xcc-8004.463.1 +0.4 1.1 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-) compare
Xcc-8004.3576.1 +0.4 2.4 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.3514.1 +0.4 2.0 FIG01211598: hypothetical protein compare
Xcc-8004.3783.1 +0.4 2.6 Two-component system sensor protein compare
Xcc-8004.48.1 +0.4 0.6 FIG01212903: hypothetical protein compare
Xcc-8004.4301.1 +0.4 1.9 Nucleoside permease NupC compare
Xcc-8004.4806.1 +0.4 0.8 FIG01211609: hypothetical protein compare
Xcc-8004.5268.1 +0.4 1.1 Mobile element protein compare
Xcc-8004.2735.1 +0.4 3.7 FIG016519: Putative DNA-binding protein compare
Xcc-8004.4343.1 +0.4 2.8 peptidase compare
Xcc-8004.1303.1 +0.4 1.5 Inner membrane protein of type IV secretion of T-DNA complex, VirB6 compare
Xcc-8004.2085.1 +0.4 1.4 Xanthan biosynthesis acetyltransferase GumG compare
Xcc-8004.1805.1 +0.4 1.5 Transcriptional regulator, LysR family compare
Xcc-8004.3281.1 +0.4 2.0 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.643.1 +0.4 2.8 FIG071884: Hypothetical protein compare
Xcc-8004.3064.1 +0.4 2.0 Xylose isomerase (EC 5.3.1.5) compare
Xcc-8004.4879.1 +0.4 1.6 FIG01209773: hypothetical protein compare
Xcc-8004.1228.1 +0.4 2.6 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.846.1 +0.4 1.3 Protein of unknown function DUF484 compare
Xcc-8004.721.1 +0.4 1.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1428.1 +0.4 1.6 FIG01211346: hypothetical protein compare
Xcc-8004.17.1 +0.4 1.4 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) compare
Xcc-8004.4259.1 +0.4 1.0 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Xcc-8004.3479.1 +0.4 0.6 aklaviketone reductase compare
Xcc-8004.4968.1 +0.4 1.8 FIG01210546: hypothetical protein compare
Xcc-8004.777.1 +0.4 1.0 FIG01211805: hypothetical protein compare
Xcc-8004.1414.1 +0.4 0.7 Lactoylglutathione lyase and related lyases compare
Xcc-8004.3734.1 +0.4 1.3 Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) compare
Xcc-8004.1644.1 +0.4 2.2 hypothetical protein compare
Xcc-8004.1162.1 +0.4 1.1 FIG01210644: hypothetical protein compare
Xcc-8004.1615.1 +0.4 0.6 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.907.1 +0.4 3.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.1748.1 +0.4 1.8 hypothetical protein compare
Xcc-8004.1463.1 +0.4 1.9 Transcriptional regulator lysR family compare
Xcc-8004.2923.1 +0.4 2.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.4845.1 +0.4 2.9 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
Xcc-8004.1564.1 +0.4 1.7 Protein of unknown function UPF0060 compare
Xcc-8004.4920.1 +0.4 2.4 POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE) compare
Xcc-8004.3154.1 +0.4 1.2 Probable low-affinity inorganic phosphate transporter compare
Xcc-8004.3040.1 +0.4 1.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Xcc-8004.2530.1 +0.4 1.7 FIG01210404: hypothetical protein compare
Xcc-8004.4306.1 +0.4 1.2 hypothetical protein compare
Xcc-8004.944.1 +0.4 0.9 General secretion pathway protein F compare
Xcc-8004.4862.1 +0.4 1.8 Phage-related baseplate assembly protein compare
Xcc-8004.3786.1 +0.4 1.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.3605.1 +0.4 2.3 hypothetical protein compare
Xcc-8004.1518.1 +0.4 1.7 FIG01212366: hypothetical protein compare
Xcc-8004.4944.1 +0.4 1.6 Two-component system sensor protein compare
Xcc-8004.25.1 +0.4 1.2 FIG01211097: hypothetical protein compare
Xcc-8004.339.1 +0.4 2.0 Organic hydroperoxide resistance transcriptional regulator compare
Xcc-8004.4463.1 +0.4 2.6 Integral membrane protein compare
Xcc-8004.2985.1 +0.4 2.0 hypothetical protein compare
Xcc-8004.4912.1 +0.4 0.9 FIG01210621: hypothetical protein compare
Xcc-8004.3761.1 +0.4 1.4 FIG01211233: hypothetical protein compare
Xcc-8004.1772.1 +0.4 0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.137.1 +0.4 1.4 FIG01209674: hypothetical protein compare
Xcc-8004.255.1 +0.4 1.0 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) compare
Xcc-8004.1636.1 +0.4 1.5 hypothetical protein compare
Xcc-8004.1399.1 +0.4 1.5 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Xcc-8004.4526.1 +0.4 2.2 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.618.1 +0.4 1.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.1148.1 +0.4 1.5 hypothetical protein compare
Xcc-8004.1832.1 +0.4 1.3 FIG01210449: hypothetical protein compare
Xcc-8004.4338.1 +0.4 1.3 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Xanthomonas campestris pv. campestris strain 8004

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms