Experiment set7IT061 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with Cholin acetate 15 mM

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c08600 +2.3 20.6 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c08590 +2.3 17.2 heme NO binding domain-containing protein compare
PGA1_c34880 +2.1 18.7 putative response regulator compare
PGA1_c33190 +2.1 15.8 putative anti-sigma-B factor antagonist compare
PGA1_c34890 +1.9 15.6 putative histidine-containing phosphotransfer protein compare
PGA1_65p00450 +1.2 4.1 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c02440 +1.2 10.8 putative ATP-binding/permease fusion ABC transporter compare
PGA1_c31880 +1.2 11.7 signal transduction histidine kinase compare
PGA1_c06420 +1.2 5.3 acetyltransferase domain-containing protein compare
PGA1_c02450 +1.2 10.4 putative outer membrane efflux protein compare
PGA1_c02460 +1.1 9.7 hypothetical protein compare
PGA1_c14190 +1.1 8.8 putative transcriptional regulator, AraC family compare
PGA1_c20140 +1.1 6.2 putative arginine-tRNA-protein transferase compare
PGA1_c02430 +1.1 7.7 type I secretion membrane fusion protein, HlyD family compare
PGA1_78p00540 +0.9 2.5 hypothetical protein compare
PGA1_c30410 +0.8 1.8 HTH-type transcriptional regulator, AsnC family compare
PGA1_c11400 +0.8 4.6 ferric uptake regulation protein Fur compare
PGA1_c09290 +0.7 3.1 WGR domain. compare
PGA1_c08890 +0.7 3.9 putative capsule polysaccharide export outer membrane protein compare
PGA1_c11710 +0.7 4.1 transcriptional regulator, LysR family compare
PGA1_c32530 +0.7 4.5 CobW-like nucleotide-binding protein compare
PGA1_c27240 +0.6 2.3 hypothetical protein compare
PGA1_c18560 +0.6 2.5 hypothetical protein compare
PGA1_c19200 +0.6 2.4 Predicted Fe-S protein compare
PGA1_c15660 +0.6 3.8 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c16450 +0.6 1.6 Phytoene/squalene synthetase compare
PGA1_262p00340 +0.6 2.6 oligopeptide ABC transporter, ATP binding protein compare
PGA1_262p01030 +0.6 2.2 dipeptide transport system permease protein DppB compare
PGA1_c07710 +0.6 1.1 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c13430 +0.6 3.6 C4-dicarboxylate transport sensor protein DctB compare
PGA1_78p00160 +0.6 1.8 putative sugar-binding periplasmic protein compare
PGA1_262p00700 +0.6 1.2 stressosome protein rsbS-like protein compare
PGA1_c02020 +0.5 1.7 Predicted metal-binding protein compare
PGA1_c31270 +0.5 5.2 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_c16190 +0.5 2.1 hypothetical protein compare
PGA1_c31260 +0.5 5.0 Protein of unknown function (DUF3131). compare
PGA1_c01790 +0.5 2.4 hypothetical protein compare
PGA1_c31930 +0.5 4.3 putative transporter, MFS family compare
PGA1_c12390 +0.5 0.9 putative protein SoxS compare
PGA1_262p01290 +0.5 2.3 transcriptional regulator, AraC family compare
PGA1_c22070 +0.5 2.5 Cytochrome B561 compare
PGA1_c35560 +0.5 3.7 chemotaxis protein MotB-like protein compare
PGA1_c15590 +0.5 4.7 putative transcriptional activator protein compare
PGA1_c01670 +0.5 1.5 hypothetical protein compare
PGA1_c14140 +0.5 1.3 hypothetical protein compare
PGA1_c24160 +0.5 1.5 hypothetical protein compare
PGA1_262p00250 +0.5 1.7 ferritin-like protein compare
PGA1_c34650 +0.5 0.7 UPF0090 protein YhbC compare
PGA1_c21640 +0.5 2.2 hypothetical protein compare
PGA1_c13510 +0.5 0.7 hypothetical protein compare
PGA1_c02850 +0.5 1.5 peptidase S49-like protein compare
PGA1_c26150 +0.5 1.5 putative ETC complex I subunit compare
PGA1_262p01630 +0.5 0.9 hypothetical protein compare
PGA1_78p00490 +0.4 1.2 putative HTH-type transcriptional regulator compare
PGA1_c34710 +0.4 1.9 glutaredoxin GrxC compare
PGA1_c15710 +0.4 2.0 acyl-CoA dehydrogenase compare
PGA1_c10730 +0.4 1.7 ribose-5-phosphate isomerase B compare
PGA1_c12300 +0.4 3.1 glucans biosynthesis glucosyltransferase H compare
PGA1_c34770 +0.4 3.0 Uncharacterized protein conserved in bacteria compare
PGA1_c12310 +0.4 3.2 glucans biosynthesis protein G compare
PGA1_262p00380 +0.4 1.4 sugar transferase compare
PGA1_65p00270 +0.4 1.7 Hemolysin-type calcium-binding repeat (2 copies). compare
PGA1_c21060 +0.4 2.5 cold shock protein CspA compare
PGA1_c16750 +0.4 2.2 putative MFS-type transporter compare
PGA1_c17400 +0.4 1.8 Uncharacterized protein conserved in bacteria compare
PGA1_c03040 +0.4 2.6 hypothetical protein compare
PGA1_c10830 +0.4 2.0 colicin V production protein-like protein compare
PGA1_c11000 +0.4 2.7 hypothetical protein compare
PGA1_c18520 +0.4 1.8 Uncharacterized protein conserved in bacteria compare
PGA1_262p00660 +0.4 1.1 Predicted periplasmic protein compare
PGA1_c05390 +0.4 2.5 glycosyl transferase compare
PGA1_c05730 +0.4 1.3 putative methylated-DNA--protein-cysteine methyltransferase compare
PGA1_78p00050 +0.4 1.2 peroxidase/catalase HPI compare
PGA1_c13170 +0.4 2.1 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PGA1_262p01020 +0.4 2.0 dipeptide transport system permease protein DppC compare
PGA1_c12030 +0.4 2.5 3-ketoacyl-CoA thiolase FadA compare
PGA1_c13640 +0.4 2.3 Phosphopantetheine attachment site. compare
PGA1_c01830 +0.4 1.6 Uncharacterized conserved small protein compare
PGA1_262p01490 +0.4 0.9 putative sarcosine oxidase, gamma subunit compare
PGA1_262p00570 +0.4 1.2 hypothetical protein compare
PGA1_c13500 +0.4 1.5 hypothetical protein compare
PGA1_c17740 +0.4 2.2 putative gene transfer agent protein compare
PGA1_c16520 +0.4 1.7 putative branched-chain amino acid transporter, ATP-binding protein compare
PGA1_c34590 +0.4 2.0 putative peptidylprolyl isomerase compare
PGA1_262p01410 +0.4 0.8 malate/L-lactate dehydrogenase-like protein compare
PGA1_c18490 +0.4 3.3 Predicted ATPase compare
PGA1_c31760 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
PGA1_78p00240 +0.4 1.2 Uncharacterized protein conserved in bacteria compare
PGA1_c12550 +0.4 1.6 hypothetical protein compare
PGA1_262p00730 +0.4 1.1 putative signal transduction histidine kinase compare
PGA1_c08310 +0.4 1.4 Hemin uptake protein compare
PGA1_c01080 +0.4 1.0 Uncharacterized conserved protein compare
PGA1_262p00300 +0.4 1.2 ABC transporter, extracellular solute-binding protein compare
PGA1_262p01360 +0.4 1.5 transcriptional regulator, LysR family compare
PGA1_c09460 +0.4 1.4 Uncharacterized conserved small protein compare
PGA1_c18480 +0.4 3.3 hypothetical protein compare
PGA1_c21720 +0.3 2.2 putative S-adenosylmethionine uptake transporter compare
PGA1_c03050 +0.3 1.4 hypothetical protein compare
PGA1_c21520 +0.3 1.6 hypothetical protein compare
PGA1_c22270 +0.3 1.6 Protein of unknown function (DUF1353). compare
PGA1_c31920 +0.3 1.5 thioeseterase-like protein compare
PGA1_c18380 +0.3 0.9 Phage Head-Tail Attachment. compare
PGA1_c29860 +0.3 2.1 hypothetical protein compare
PGA1_c10670 +0.3 1.6 putative putrescine transport ATP-binding protein compare
PGA1_c06020 +0.3 1.4 thioesterase domain-containing protein compare
PGA1_262p02160 +0.3 2.3 putative chemotaxis response regulator protein-glutamate methylesterase compare
PGA1_c35260 +0.3 1.5 ATP-dependent protease HslV compare
PGA1_262p00710 +0.3 0.7 serine/threonine-protein kinase RsbT-like protein compare
PGA1_c10690 +0.3 1.4 hypothetical protein compare
PGA1_c29690 +0.3 1.8 serine protease-like protein compare
PGA1_c17280 +0.3 1.8 cystathionine beta-synthase-like protein compare
PGA1_c31180 +0.3 1.5 Uncharacterized protein conserved in bacteria compare
PGA1_c10680 +0.3 1.6 helix-turn-helix domain-containing protein compare
PGA1_c34190 +0.3 2.1 methyltransferase-like protein compare
PGA1_c00800 +0.3 1.9 hypothetical protein compare
PGA1_262p00990 +0.3 1.2 transcriptional regulator, LysR family compare
PGA1_c33430 +0.3 1.9 glutathione S-transferase-like protein compare
PGA1_c26320 +0.3 1.5 hypothetical protein compare
PGA1_c26400 +0.3 1.3 putative HTH-type transcriptional regulator compare
PGA1_c31790 +0.3 1.3 Protein of unknown function (DUF2798). compare
PGA1_c19930 +0.3 2.0 agmatinase SpeB compare
PGA1_c34300 +0.3 2.5 hydantoinase / oxoprolinase family protein compare
PGA1_c20590 +0.3 1.3 hypothetical protein compare
PGA1_262p00060 +0.3 1.3 putative glycosyl transferase compare
PGA1_c12440 +0.3 0.8 sulphur oxidation protein SoxZ compare
PGA1_c11810 +0.3 0.9 hypothetical protein compare
PGA1_262p02110 +0.3 1.0 putative chemotaxis protein CheW compare
PGA1_c34510 +0.3 2.4 hypothetical protein compare
PGA1_c12370 +0.3 2.1 YeeE/YedE family (DUF395). compare
PGA1_c13080 +0.3 1.2 transcriptional regulator, GntR family compare
PGA1_c34900 +0.3 2.6 threonine dehydratase biosynthetic compare
PGA1_c16360 +0.3 1.1 putative transriptional regulator, AsnC family compare
PGA1_262p00400 +0.3 1.3 putative cytochrome c peroxidase compare
PGA1_65p00040 +0.3 1.4 RTX toxins and related Ca2+-binding proteins compare
PGA1_c05890 +0.3 1.9 thioesterase domain-containing protein compare
PGA1_c07870 +0.3 2.1 alpha-glucoside transport system permease protein AglF compare
PGA1_c25720 +0.3 1.8 transcriptional regulator, LysR family compare
PGA1_c34970 +0.3 1.7 peptide methionine sulfoxide reductase MsrA compare
PGA1_c00610 +0.3 0.7 acetyltransferase, GNAT family compare
PGA1_262p01310 +0.3 1.1 putative flavin-containing monooxygenase compare
PGA1_262p00490 +0.3 0.8 hypothetical protein compare
PGA1_c12330 +0.3 2.1 hypothetical protein compare
PGA1_c07920 +0.3 1.7 signal transduction histidine kinase compare
PGA1_c32940 +0.3 2.2 Predicted periplasmic protein compare
PGA1_c26060 +0.3 1.3 Domain of unknown function (DUF1772). compare
PGA1_c19050 +0.3 0.9 hypothetical protein compare
PGA1_c36270 +0.3 0.9 hypothetical protein compare
PGA1_c20890 +0.3 1.5 Molybdopterin biosynthesis enzyme compare
PGA1_c17680 +0.3 0.9 hypothetical protein compare
PGA1_c08680 +0.3 1.9 pirin-like protein compare
PGA1_c23430 +0.3 2.2 Domain of unknown function. compare
PGA1_c21000 +0.3 1.8 Predicted integral membrane protein (DUF2282). compare
PGA1_262p01165 +0.3 0.7 hypothetical protein compare
PGA1_262p00310 +0.3 0.9 glutathione transport system permease protein GsiC compare
PGA1_c10000 +0.3 1.9 short chain dehydrogenase / reductase compare
PGA1_c03880 +0.3 2.5 putative transcriptional activator protein RaiR compare
PGA1_c31580 +0.3 1.3 putative HTH-type transcriptional regulator, TetR family compare
PGA1_c34120 +0.3 0.5 HTH-type transcriptional regulator PetP compare
PGA1_c05370 +0.3 2.6 polyketide synthase compare
PGA1_c33055 +0.3 1.3 hypothetical protein compare
PGA1_c08780 +0.3 0.9 hypothetical protein compare
PGA1_c06410 +0.3 1.8 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
PGA1_78p00280 +0.3 0.9 putative sodium/alanine symporter compare
PGA1_c08370 +0.3 1.5 Rhodanese-related sulfurtransferase compare
PGA1_c16830 +0.3 1.1 xanthine phosphoribosyltransferase Gpt compare
PGA1_c27910 +0.3 1.4 N-acetylglucosamine kinase (EC 2.7.1.59) (from data) compare
PGA1_c22830 +0.3 1.3 putative type IV secretion system protein VirB2 compare
PGA1_c08360 +0.3 1.0 Rhodanese-related sulfurtransferase compare
PGA1_c32540 +0.3 2.1 putative Fe(3+)-transport system protein SfuB compare
PGA1_c15330 +0.3 1.2 hypothetical protein compare
PGA1_78p00500 +0.3 0.8 putative transcriptional regulator compare
PGA1_c24440 +0.3 1.2 hypothetical protein compare
PGA1_c13750 +0.3 1.1 phosphopantetheine binding protein compare
PGA1_c16820 +0.3 1.6 putative threonine efflux protein compare
PGA1_c29040 +0.3 1.7 endonuclease III compare
PGA1_c30430 +0.3 1.9 transcriptional regulator, TetR family compare
PGA1_c33890 +0.3 1.5 thioesterase-like protein compare
PGA1_65p00060 +0.3 1.0 putative regulatory protein, LuxR family compare
PGA1_c34350 +0.3 2.0 acetyl-CoA acetyltransferase PhbA compare
PGA1_c15230 +0.3 1.3 rRNA methyltransferase-like protein compare
PGA1_262p00420 +0.3 1.2 Transcriptional regulator/sugar kinase compare
PGA1_c02540 +0.3 1.2 Uncharacterized conserved protein compare
PGA1_c36300 +0.3 1.5 HTH-type transcriptional regulator, GntR family compare
PGA1_c11640 +0.3 1.4 putative HTH-type transcriptional regulator compare
PGA1_c21140 +0.3 1.1 carboxymuconolactone decarboxylase-like protein compare
PGA1_c10900 +0.3 1.6 putative orotate phosphoribosyltransferase compare
PGA1_c05260 +0.3 2.1 exopolysaccharide production protein ExoY-like protein compare
PGA1_262p02000 +0.3 1.3 putative transcriptional regulator, LysR type compare
PGA1_c11030 +0.3 1.6 MoxR-like ATPases compare
PGA1_c03330 +0.3 1.1 tetratricopeptide repeat-containing protein compare
PGA1_262p01250 +0.3 0.5 transcriptional regulator, crp family compare
PGA1_c07980 +0.3 1.5 metallo beta-lactamase domain-containing protein compare
PGA1_c04050 +0.3 1.9 phenylacetic acid degradation protein PaaD compare
PGA1_c25770 +0.3 1.9 Predicted transcription regulator, contains HTH domain (MarR family) compare
PGA1_c18420 +0.3 1.8 hypothetical protein compare
PGA1_c32830 +0.3 0.6 hypothetical protein compare
PGA1_262p01730 +0.3 1.4 putative glutathione import ATP-binding protein compare
PGA1_c13620 +0.3 1.2 hypothetical protein compare
PGA1_c19010 +0.3 0.9 Uncharacterized protein conserved in bacteria compare
PGA1_c05490 +0.3 1.2 ureidoglycolate hydrolase AllA compare


Specific Phenotypes

For 2 genes in this experiment

For stress Cholin acetate in Phaeobacter inhibens DSM 17395

For stress Cholin acetate across organisms