Experiment set7IT060 for Methanococcus maripaludis S2

Compare to:

N2 fixation, H2 media

200 most important genes:

  gene name fitness t score description  
MMP_RS01500 -8.0 -2.9 CBS domain-containing protein compare
MMP_RS07345 -5.6 -9.9 glycine synthesis protein GlyXL (from data) compare
MMP_RS04455 -5.5 -23.0 nitrogenase subunit alpha compare
MMP_RS03315 -5.4 -1.9 ferrous iron transport protein A compare
MMP_RS05250 -5.3 -2.2 NFYB/HAP3 family transcription factor subunit compare
MMP_RS04440 -5.2 -13.5 nitrogenase iron protein compare
MMP_RS06350 -5.2 -9.4 HesA/MoeB/ThiF family protein compare
MMP_RS08720 -5.2 -2.2 4Fe-4S binding protein compare
MMP_RS04450 -5.2 -16.8 P-II family nitrogen regulator compare
MMP_RS04460 -5.2 -23.4 nitrogenase molybdenum-iron protein subunit beta compare
MMP_RS04445 -5.1 -12.7 P-II family nitrogen regulator compare
MMP_RS04465 -5.0 -24.3 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMP_RS02145 -5.0 -10.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS01795 -4.9 -2.3 methanogenesis marker 6 protein compare
MMP_RS07380 -4.8 -2.9 transcription elongation factor Spt5 compare
MMP_RS04470 -4.8 -19.8 nitrogenase compare
MMP_RS03450 -4.7 -3.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS02675 -4.7 -4.1 hypothetical protein compare
MMP_RS03475 -4.7 -1.0 hypothetical protein compare
MMP_RS01175 -4.7 -6.2 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS00555 -4.6 -12.3 MFS transporter compare
MMP_RS04710 -4.6 -2.8 hypothetical protein compare
MMP_RS06475 -4.5 -6.7 FAD-dependent oxidoreductase compare
MMP_RS03035 -4.5 -6.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS02670 -4.4 -14.4 ATP-binding cassette domain-containing protein compare
MMP_RS05500 -4.3 -11.2 2-isopropylmalate synthase compare
MMP_RS07185 -4.3 -17.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS02010 -4.2 -12.3 PHP domain-containing protein compare
MMP_RS07525 -4.1 -8.4 4Fe-4S binding protein compare
MMP_RS07635 -4.1 -11.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00455 -4.0 -9.9 orotate phosphoribosyltransferase-like protein compare
MMP_RS02685 -4.0 -12.7 molybdate ABC transporter substrate-binding protein compare
MMP_RS06355 -4.0 -4.4 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05515 -4.0 -11.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS03015 -3.9 -13.0 GTP 3' 8-cyclase MoaA compare
MMP_RS02900 -3.8 -0.8 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04780 -3.8 -4.1 ribonuclease P compare
MMP_RS01005 -3.8 -1.9 riboflavin synthase compare
MMP_RS08715 -3.7 -2.4 formylmethanofuran dehydrogenase subunit B compare
MMP_RS02355 -3.6 -3.7 30S ribosomal protein S27ae compare
MMP_RS06625 -3.6 -2.9 DNA primase compare
MMP_RS06270 -3.6 -6.7 TIGR00300 family protein compare
MMP_RS02680 -3.6 -10.6 ABC transporter permease compare
MMP_RS06400 -3.6 -2.2 4Fe-4S binding protein compare
MMP_RS01225 -3.5 -8.7 DUF5379 domain-containing protein compare
MMP_RS03435 -3.5 -2.3 ketol-acid reductoisomerase compare
MMP_RS06725 -3.5 -13.8 hypothetical protein compare
MMP_RS02730 -3.5 -12.4 ModD protein compare
MMP_RS07730 -3.5 -2.6 pyruvate synthase subunit beta compare
MMP_RS00040 -3.5 -6.2 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS05265 -3.5 -3.4 2-isopropylmalate synthase compare
MMP_RS07435 -3.5 -2.8 GMP synthase subunit A compare
MMP_RS05930 -3.4 -3.3 3-isopropylmalate dehydratase large subunit compare
MMP_RS03700 -3.4 -11.3 sodium:proton antiporter compare
MMP_RS04090 -3.4 -3.7 hypothetical protein compare
MMP_RS07600 -3.4 -3.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08300 -3.4 -1.6 metal-sulfur cluster assembly factor compare
MMP_RS08165 -3.4 -3.2 phosphoglycerate dehydrogenase compare
MMP_RS01455 -3.4 -7.0 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS02245 -3.4 -4.3 hypothetical protein compare
MMP_RS00305 -3.3 -2.4 phosphoribosyl-ATP diphosphatase compare
MMP_RS08790 -3.3 -3.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS01800 -3.2 -5.9 TIGR00303 family protein compare
MMP_RS01755 -3.2 -2.0 DUF2097 domain-containing protein compare
MMP_RS02240 -3.2 -5.2 methanogenesis marker 7 protein compare
MMP_RS00750 -3.2 -3.0 fumarate hydratase compare
MMP_RS07445 -3.2 -6.2 helix-turn-helix domain-containing protein compare
MMP_RS00985 -3.1 -9.1 CDC48 family AAA ATPase compare
MMP_RS07005 -3.1 -0.9 4Fe-4S binding protein compare
MMP_RS08860 -3.0 -9.3 MinD/ParA family protein compare
MMP_RS01610 -3.0 -4.4 hypothetical protein compare
MMP_RS07845 -3.0 -3.0 LL-diaminopimelate aminotransferase compare
MMP_RS02345 -3.0 -4.7 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS04685 -2.9 -4.7 DUF126 domain-containing protein compare
MMP_RS06375 -2.9 -4.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06295 -2.9 -10.2 methanogenesis marker 14 protein compare
MMP_RS08635 -2.9 -2.5 UbiA family prenyltransferase compare
MMP_RS06730 -2.9 -2.3 phosphopantothenate/pantothenate synthetase compare
MMP_RS03640 -2.9 -4.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS01900 -2.9 -17.4 hypothetical protein compare
MMP_RS00685 -2.9 -5.7 2-phospho-L-lactate guanylyltransferase compare
MMP_RS04215 -2.8 -6.4 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS03025 -2.8 -9.8 molybdenum cofactor guanylyltransferase compare
MMP_RS07075 -2.8 -6.8 phosphomannomutase/phosphoglucomutase compare
MMP_RS07955 -2.8 -6.2 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS04585 -2.8 -12.3 AIR synthase related protein compare
MMP_RS08645 -2.8 -8.3 UPF0179 family protein compare
MMP_RS04900 -2.8 -18.9 hypothetical protein compare
MMP_RS08440 -2.8 -3.3 cell division protein SepF compare
MMP_RS01545 -2.7 -1.4 CBS domain-containing protein compare
MMP_RS07735 -2.7 -1.3 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS01380 -2.7 -6.5 PHP domain-containing protein compare
MMP_RS01925 -2.7 -12.4 DUF1616 domain-containing protein compare
MMP_RS07390 -2.6 -2.6 cell division protein FtsZ compare
MMP_RS08650 -2.6 -4.2 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS03110 -2.6 -8.3 glycosyltransferase family 2 protein compare
MMP_RS06670 -2.6 -5.9 glucose-6-phosphate isomerase compare
MMP_RS06020 -2.6 -7.7 archaeoflavoprotein AfpA compare
MMP_RS08435 -2.6 -2.8 Era-like GTP-binding protein compare
MMP_RS03580 -2.6 -3.9 signal recognition particle-docking protein FtsY compare
MMP_RS01885 -2.6 -10.3 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS02800 -2.6 -6.1 nucleotidyltransferase domain-containing protein compare
MMP_RS07605 -2.6 -4.1 diadenylate cyclase compare
MMP_RS04890 -2.5 -1.2 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03960 -2.5 -1.4 hypothetical protein compare
MMP_RS00915 -2.5 -6.4 DUF116 domain-containing protein compare
MMP_RS07200 -2.5 -9.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS06285 -2.5 -3.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08500 -2.5 -7.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS08210 -2.5 -2.8 phosphatidylglycerophosphatase A compare
MMP_RS07365 -2.4 -12.8 2-phosphoglycerate kinase compare
MMP_RS01975 -2.4 -14.6 hypothetical protein compare
MMP_RS00695 -2.4 -1.1 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01265 -2.4 -2.6 hypothetical protein compare
MMP_RS03600 -2.4 -2.5 triose-phosphate isomerase compare
MMP_RS00310 -2.4 -7.5 CBS domain-containing protein compare
MMP_RS02195 -2.3 -5.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS00515 -2.3 -1.1 DUF655 domain-containing protein compare
MMP_RS01020 -2.3 -1.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06120 -2.3 -3.1 UPF0147 family protein compare
MMP_RS04615 -2.3 -3.9 PDGLE domain-containing protein compare
MMP_RS01880 -2.3 -7.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06940 -2.3 -6.1 polyprenyl diphosphate synthase compare
MMP_RS07535 -2.3 -9.7 4Fe-4S binding protein compare
MMP_RS05640 -2.3 -7.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01830 -2.2 -1.7 tRNA-Val compare
MMP_RS04790 -2.2 -11.7 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS05430 -2.2 -5.2 TIGR00288 family NYN domain-containing protein compare
MMP_RS00810 -2.2 -7.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS06230 -2.2 -3.1 helix-turn-helix domain-containing protein compare
MMP_RS07355 -2.2 -1.2 transcription factor S compare
MMP_RS00300 -2.1 -0.8 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01905 -2.1 -12.9 glycosyltransferase compare
MMP_RS09020 -2.1 -2.1 hypothetical protein compare
MMP_RS01725 -2.1 -5.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS01220 -2.1 -7.6 hypothetical protein compare
MMP_RS04605 -2.1 -6.0 cobalt ECF transporter T component CbiQ compare
MMP_RS07700 -2.1 -11.9 DUF1188 domain-containing protein compare
MMP_RS03440 -2.1 -1.6 MoaD/ThiS family protein compare
MMP_RS01325 -2.0 -2.2 dihydroneopterin aldolase family protein compare
MMP_RS06630 -2.0 -1.0 UPF0058 family protein compare
MMP_RS05925 -2.0 -4.7 small nuclear ribonucleoprotein compare
MMP_RS04620 -2.0 -11.2 cobalt transporter CbiM compare
MMP_RS01875 -2.0 -9.1 N-acetyltransferase compare
MMP_RS03445 -2.0 -1.2 methanogenesis marker 17 protein compare
MMP_RS04870 -2.0 -5.0 TIGR02253 family HAD-type hydrolase compare
MMP_RS08195 -2.0 -8.8 hypothetical protein compare
MMP_RS06315 -1.9 -1.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06395 -1.9 -4.5 ThiF family adenylyltransferase compare
MMP_RS06855 -1.9 -9.3 hypothetical protein compare
MMP_RS07545 -1.9 -1.2 HTH domain-containing protein compare
MMP_RS06885 -1.9 -3.1 50S ribosome-binding GTPase compare
MMP_RS01890 -1.9 -6.0 nucleotide sugar dehydrogenase compare
MMP_RS02165 -1.9 -7.8 tRNA-dihydrouridine synthase compare
MMP_RS03400 -1.9 -3.1 archease compare
MMP_RS05815 -1.8 -2.1 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00725 -1.8 -6.0 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS06975 -1.8 -2.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS07710 -1.8 -8.5 cell division protein FtsZ compare
MMP_RS05460 -1.8 -10.8 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS07695 -1.8 -6.9 DUF3236 domain-containing protein compare
MMP_RS04850 -1.8 -13.5 UPF0254 family protein compare
MMP_RS03390 -1.8 -6.4 malate dehydrogenase compare
MMP_RS05845 -1.7 -2.1 tRNA-intron lyase compare
MMP_RS05540 -1.7 -2.5 hypothetical protein compare
MMP_RS07575 -1.7 -5.0 RNA ligase partner protein compare
MMP_RS00520 -1.7 -1.5 RNA polymerase Rpb4 family protein compare
MMP_RS01970 -1.7 -9.8 TIGR04279 domain-containing protein compare
MMP_RS04955 -1.7 -5.8 DNA topoisomerase I compare
MMP_RS00895 -1.7 -4.4 hypothetical protein compare
MMP_RS00735 -1.7 -4.2 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS02780 -1.7 -6.3 hypothetical protein compare
MMP_RS06900 -1.6 -3.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS05765 -1.6 -5.1 M42 family metallopeptidase compare
MMP_RS08745 -1.6 -6.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07530 -1.6 -7.6 4Fe-4S binding protein compare
MMP_RS00730 -1.6 -4.1 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS08705 -1.6 -5.7 sulfopyruvate decarboxylase subunit beta compare
MMP_RS06895 -1.6 -1.9 selenocysteine-specific translation elongation factor compare
MMP_RS01700 -1.6 -0.8 dihydroxy-acid dehydratase compare
MMP_RS01665 -1.6 -3.3 DUF2111 domain-containing protein compare
MMP_RS01955 -1.6 -3.8 hypothetical protein compare
MMP_RS01915 -1.6 -9.3 DUF354 domain-containing protein compare
MMP_RS09055 -1.6 -1.1 CAP domain-containing protein compare
MMP_RS06105 -1.5 -6.7 hydrogenase maturation peptidase HycI compare
MMP_RS01365 -1.5 -2.7 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS03090 -1.5 -6.2 cation:proton antiporter compare
MMP_RS07090 -1.5 -7.3 tRNA (adenine-N1)-methyltransferase compare
MMP_RS01910 -1.5 -8.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS02190 -1.5 -3.5 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01385 -1.5 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS05555 -1.5 -1.6 DUF4040 domain-containing protein compare
MMP_RS05440 -1.5 -6.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS06175 -1.4 -4.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS05535 -1.4 -4.0 hypothetical protein compare
MMP_RS08155 -1.4 -6.1 hypothetical protein compare
MMP_RS08785 -1.4 -1.0 RNA-protein complex protein Nop10 compare
MMP_RS05345 -1.4 -5.4 hypothetical protein compare
MMP_RS03485 -1.4 -3.4 TIGR00267 family protein compare
MMP_RS07630 -1.4 -1.5 ATP-binding cassette domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments