Experiment set7IT059 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

200 most important genes:

  gene name fitness t score description  
Xcc-8004.4510.1 -4.9 -3.4 ATP binding component of ABC-transporter compare
Xcc-8004.171.1 -4.8 -2.1 hypothetical protein compare
Xcc-8004.2387.1 -4.7 -3.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.5168.1 -4.4 -1.9 hypothetical protein compare
Xcc-8004.3324.1 -4.1 -4.8 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.4480.1 -4.1 -12.5 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.1961.1 -3.5 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.914.1 -3.5 -10.0 tail-specific protease compare
Xcc-8004.3536.1 -2.9 -6.9 FIG01210913: hypothetical protein compare
Xcc-8004.3855.1 -2.8 -8.7 FIG01209965: hypothetical protein compare
Xcc-8004.2406.1 -2.7 -9.9 Manganese transport protein MntH compare
Xcc-8004.4503.1 -2.7 -6.5 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.3433.1 -2.7 -6.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2217.1 -2.6 -3.1 FIG01209779: hypothetical protein compare
Xcc-8004.1241.1 -2.6 -5.3 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.1511.1 -2.6 -3.5 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3728.1 -2.6 -2.1 hypothetical protein compare
Xcc-8004.4752.1 -2.5 -2.4 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4620.1 -2.4 -6.3 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.713.1 -2.4 -1.5 FIG01210186: hypothetical protein compare
Xcc-8004.2711.1 -2.4 -2.0 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.1007.1 -2.4 -1.7 acetylxylan esterase compare
Xcc-8004.5367.1 -2.4 -5.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.1790.1 -2.3 -3.8 Zinc uptake regulation protein ZUR compare
Xcc-8004.3346.1 -2.3 -2.7 hypothetical protein compare
Xcc-8004.3615.1 -2.3 -9.5 Virulence protein compare
Xcc-8004.1727.1 -2.3 -2.2 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1437.1 -2.3 -4.8 Kup system potassium uptake protein compare
Xcc-8004.3614.1 -2.2 -12.6 hypothetical protein compare
Xcc-8004.4824.1 -2.2 -8.6 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.645.1 -2.2 -1.9 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.4368.1 -2.2 -2.8 FIG01209977: hypothetical protein compare
Xcc-8004.2922.1 -2.1 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1196.1 -2.1 -6.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.5368.1 -2.1 -3.2 FIG01210868: hypothetical protein compare
Xcc-8004.1677.1 -2.1 -3.7 FIG01209993: hypothetical protein compare
Xcc-8004.1236.1 -2.1 -5.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.2346.1 -2.0 -2.4 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.4039.1 -2.0 -2.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.4200.1 -1.9 -2.6 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.3731.1 -1.9 -2.3 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.2842.1 -1.9 -2.0 FIG01212239: hypothetical protein compare
Xcc-8004.3679.1 -1.9 -8.0 Serine protease precursor MucD/AlgY associated with sigma factor RpoE compare
Xcc-8004.4759.1 -1.8 -11.2 protease IV compare
Xcc-8004.5201.1 -1.8 -2.5 FIG01211164: hypothetical protein compare
Xcc-8004.3310.1 -1.8 -3.5 Chromosome partition protein smc compare
Xcc-8004.4737.1 -1.8 -5.2 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.826.1 -1.8 -8.6 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Xcc-8004.4275.1 -1.8 -4.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.3723.1 -1.7 -2.4 hypothetical protein compare
Xcc-8004.1336.1 -1.7 -3.5 two-component system sensor protein compare
Xcc-8004.983.1 -1.7 -2.9 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.4596.1 -1.7 -6.7 hypothetical protein compare
Xcc-8004.1372.1 -1.7 -1.6 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2337.1 -1.7 -4.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.2879.1 -1.7 -1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.3955.1 -1.7 -3.1 HflK protein compare
Xcc-8004.2266.1 -1.6 -1.9 FIG01211351: hypothetical protein compare
Xcc-8004.93.1 -1.6 -2.5 FIG01211857: hypothetical protein compare
Xcc-8004.5125.1 -1.6 -3.3 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
Xcc-8004.5407.1 -1.6 -1.8 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.1536.1 -1.5 -3.7 Virulence protein compare
Xcc-8004.3322.1 -1.5 -1.3 FIG01211446: hypothetical protein compare
Xcc-8004.4000.1 -1.5 -2.3 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.1436.1 -1.5 -1.7 Holliday junction DNA helicase RuvA compare
Xcc-8004.4112.1 -1.5 -2.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.3655.1 -1.5 -1.8 FIG01210025: hypothetical protein compare
Xcc-8004.213.1 -1.5 -10.6 Putative OMR family iron-siderophore receptor precursor compare
Xcc-8004.4026.1 -1.4 -5.3 FIG01209666: hypothetical protein compare
Xcc-8004.3054.1 -1.4 -1.7 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.5239.1 -1.4 -3.3 Hexuronate transporter compare
Xcc-8004.4486.1 -1.4 -8.8 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.4514.1 -1.4 -8.7 Glycosyltransferase compare
Xcc-8004.3674.1 -1.4 -1.7 FIG01209931: hypothetical protein compare
Xcc-8004.3676.1 -1.4 -2.2 Translation elongation factor LepA compare
Xcc-8004.1763.1 -1.4 -1.6 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.2074.1 -1.4 -3.4 Transcriptional regulator, MerR family compare
Xcc-8004.1362.1 -1.4 -2.8 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.2011.1 -1.3 -1.3 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.4457.1 -1.3 -2.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.4373.1 -1.3 -2.6 LppC putative lipoprotein compare
Xcc-8004.5365.1 -1.3 -4.7 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.5366.1 -1.3 -8.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.5343.1 -1.3 -4.4 hypothetical protein compare
Xcc-8004.5114.1 -1.3 -4.7 ATP-dependent DNA helicase UvrD/PcrA compare
Xcc-8004.3211.1 -1.3 -1.1 protein of unknown function DUF88 compare
Xcc-8004.4669.1 -1.3 -8.0 Transcriptional regulator NtrC family compare
Xcc-8004.4517.1 -1.3 -6.3 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.4286.1 -1.3 -5.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.837.1 -1.3 -1.1 FIG01210690: hypothetical protein compare
Xcc-8004.1244.1 -1.2 -5.9 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
Xcc-8004.4430.1 -1.2 -1.8 General secretion pathway protein G compare
Xcc-8004.3721.1 -1.2 -1.1 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Xcc-8004.968.1 -1.2 -5.0 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.4507.1 -1.2 -3.7 Glycosyltransferase compare
Xcc-8004.3385.1 -1.2 -2.7 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) compare
Xcc-8004.4473.1 -1.2 -8.3 FIG01212400: hypothetical protein compare
Xcc-8004.2415.1 -1.2 -6.3 FIG137360: hypothetical protein compare
Xcc-8004.5140.1 -1.2 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Xcc-8004.2231.1 -1.2 -4.1 Stringent starvation protein A compare
Xcc-8004.3165.1 -1.2 -1.5 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.3321.1 -1.2 -1.4 FIG01209847: hypothetical protein compare
Xcc-8004.833.1 -1.2 -5.2 Putative salt-induced outer membrane protein compare
Xcc-8004.3703.1 -1.2 -1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.328.1 -1.2 -2.4 FIG024006: iron uptake protein compare
Xcc-8004.2713.1 -1.2 -1.1 Nitrate/nitrite transporter compare
Xcc-8004.1662.1 -1.2 -6.3 RNA polymerase sigma-54 factor RpoN compare
Xcc-8004.3394.1 -1.2 -1.9 hypothetical protein compare
Xcc-8004.513.1 -1.2 -6.6 Outer membrane vitamin B12 receptor BtuB compare
Xcc-8004.5135.1 -1.1 -2.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.2579.1 -1.1 -1.6 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.3863.1 -1.1 -3.2 Septum site-determining protein MinD compare
Xcc-8004.1328.1 -1.1 -1.1 FIG01210090: hypothetical protein compare
Xcc-8004.2245.1 -1.1 -5.8 Virulence regulator compare
Xcc-8004.4506.1 -1.1 -5.2 membrane protein WxcD compare
Xcc-8004.127.1 -1.1 -1.4 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3978.1 -1.1 -1.9 FIG01211989: hypothetical protein compare
Xcc-8004.3882.1 -1.1 -1.7 hypothetical protein compare
Xcc-8004.4466.1 -1.1 -3.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Xcc-8004.3862.1 -1.1 -3.1 Septum site-determining protein MinC compare
Xcc-8004.3426.1 -1.1 -3.3 Chaperone protein DnaJ compare
Xcc-8004.29.1 -1.1 -3.9 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.4738.1 -1.1 -5.0 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.884.1 -1.1 -4.2 Rod shape-determining protein MreD compare
Xcc-8004.946.1 -1.1 -2.7 General secretion pathway protein H compare
Xcc-8004.4485.1 -1.0 -4.9 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.2569.1 -1.0 -1.2 Single-stranded DNA-binding protein in PFGI-1-like cluster compare
Xcc-8004.1353.1 -1.0 -5.5 Type IV fimbriae expression regulatory protein PilR compare
Xcc-8004.1162.1 -1.0 -2.3 FIG01210644: hypothetical protein compare
Xcc-8004.659.1 -1.0 -1.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2699.1 -1.0 -6.1 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Xcc-8004.740.1 -1.0 -2.1 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Xcc-8004.3954.1 -1.0 -2.7 HflC protein compare
Xcc-8004.323.1 -1.0 -1.4 FIG01210738: hypothetical protein compare
Xcc-8004.2228.1 -1.0 -2.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.2314.1 -1.0 -5.0 FIG01209975: hypothetical protein compare
Xcc-8004.2565.1 -1.0 -2.2 hypothetical protein compare
Xcc-8004.5133.1 -1.0 -1.4 FIG01212313: hypothetical protein compare
Xcc-8004.2230.1 -1.0 -2.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Xcc-8004.2422.1 -1.0 -1.8 Putative stress-responsive transcriptional regulator compare
Xcc-8004.4775.1 -1.0 -4.5 Cell division protein FtsX compare
Xcc-8004.2867.1 -1.0 -0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4250.1 -1.0 -1.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.811.1 -1.0 -2.2 FIG01211260: hypothetical protein compare
Xcc-8004.4672.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.623.1 -1.0 -1.3 Phosphoserine phosphatase compare
Xcc-8004.1450.1 -1.0 -3.4 Queuosine Biosynthesis QueC ATPase compare
Xcc-8004.205.1 -1.0 -5.8 Ribose operon repressor compare
Xcc-8004.2734.1 -1.0 -3.2 Mlr7403 protein compare
Xcc-8004.2358.1 -1.0 -3.3 Segregation and condensation protein A compare
Xcc-8004.2334.1 -0.9 -3.8 Transport ATP-binding protein CydD compare
Xcc-8004.197.1 -0.9 -2.7 rhamnogalacturonan acetylesterase compare
Xcc-8004.4225.1 -0.9 -1.2 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.1380.1 -0.9 -1.4 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.2411.1 -0.9 -3.6 Small-conductance mechanosensitive channel compare
Xcc-8004.2653.1 -0.9 -2.7 hypothetical protein compare
Xcc-8004.4465.1 -0.9 -2.5 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.4210.1 -0.9 -2.7 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.3852.1 -0.9 -2.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.2105.1 -0.9 -2.3 FIG01210123: hypothetical protein compare
Xcc-8004.1811.1 -0.9 -1.4 extracellular serine protease compare
Xcc-8004.4092.1 -0.9 -4.3 FIG01209901: hypothetical protein compare
Xcc-8004.778.1 -0.9 -1.6 FIG01214273: hypothetical protein compare
Xcc-8004.4381.1 -0.9 -2.2 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.4529.1 -0.9 -0.8 FIG01210979: hypothetical protein compare
Xcc-8004.410.1 -0.9 -1.3 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1658.1 -0.9 -3.8 hypothetical protein compare
Xcc-8004.5205.1 -0.9 -1.5 FIG01210461: hypothetical protein compare
Xcc-8004.2333.1 -0.9 -3.9 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.4231.1 -0.9 -0.9 two-component system regulatory protein compare
Xcc-8004.1427.1 -0.9 -2.3 Type I antifreeze protein compare
Xcc-8004.2372.1 -0.9 -3.2 Pheromone shutdown protein compare
Xcc-8004.3329.1 -0.9 -1.9 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Xcc-8004.4170.1 -0.9 -0.8 LSU ribosomal protein L25p compare
Xcc-8004.3155.1 -0.9 -3.5 Phosphate transport regulator (distant homolog of PhoU) compare
Xcc-8004.2356.1 -0.9 -2.2 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.4001.1 -0.9 -1.8 FIG146278: Maf/YceF/YhdE family protein compare
Xcc-8004.4168.1 -0.9 -1.9 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.821.1 -0.9 -2.9 Sulfate permease compare
Xcc-8004.1117.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.2420.1 -0.9 -3.7 PHA synthase subunit compare
Xcc-8004.2614.1 -0.9 -2.0 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.1778.1 -0.9 -2.8 Protein involved in catabolism of external DNA compare
Xcc-8004.5369.1 -0.8 -2.9 Lipoprotein compare
Xcc-8004.1878.1 -0.8 -3.7 Protein of unknown function DUF541 compare
Xcc-8004.4063.1 -0.8 -2.4 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Xcc-8004.3304.1 -0.8 -0.9 FIG01211108: hypothetical protein compare
Xcc-8004.4976.1 -0.8 -5.6 hypothetical protein compare
Xcc-8004.3722.1 -0.8 -0.9 HrpB7 protein compare
Xcc-8004.2335.1 -0.8 -2.4 Transport ATP-binding protein CydC compare
Xcc-8004.555.1 -0.8 -5.1 hypothetical protein compare
Xcc-8004.4790.1 -0.8 -2.6 N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) compare
Xcc-8004.4046.1 -0.8 -4.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4283.1 -0.8 -0.8 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.5253.1 -0.8 -0.9 hypothetical protein compare
Xcc-8004.1491.1 -0.8 -5.3 Glycosyltransferase compare
Xcc-8004.353.1 -0.8 -1.3 FIG01210121: hypothetical protein compare
Xcc-8004.703.1 -0.8 -0.8 hypothetical protein compare
Xcc-8004.1016.1 -0.8 -3.5 Sucrose phosphorylase (EC 2.4.1.7) compare
Xcc-8004.2386.1 -0.8 -5.3 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare


Specific Phenotypes

For 9 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Xanthomonas campestris pv. campestris strain 8004

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms