Experiment set7IT059 for Methanococcus maripaludis S2

Compare to:

N2 fixation, H2 media

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS06715 +2.3 13.6 cache domain-containing protein compare
MMP_RS03340 +2.2 1.9 ABC transporter ATP-binding protein compare
MMP_RS06720 +2.2 11.1 response regulator transcription factor compare
MMP_RS02885 +2.1 12.2 molybdopterin biosynthesis protein compare
MMP_RS05835 +1.7 1.5 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS02290 +1.7 8.5 MBL fold metallo-hydrolase compare
MMP_RS08320 +1.5 5.2 molybdopterin molybdotransferase MoeA compare
MMP_RS04885 +1.4 9.5 sulfite exporter TauE/SafE family protein compare
MMP_RS08310 +1.3 2.6 TMEM165/GDT1 family protein compare
MMP_RS05975 +1.3 2.1 hypothetical protein compare
MMP_RS06540 +1.2 2.8 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS02045 +1.1 1.9 tRNA-Met compare
MMP_RS00185 +1.1 7.4 potassium channel protein compare
MMP_RS08675 +1.1 3.3 class III signal peptide-containing protein compare
MMP_RS05695 +1.1 6.2 phospholipase D-like domain-containing protein compare
MMP_RS01280 +1.1 6.9 DUF515 domain-containing protein compare
MMP_RS07765 +1.0 4.9 sodium:alanine symporter family protein compare
MMP_RS05110 +1.0 4.0 16S ribosomal RNA methyltransferase A compare
MMP_RS08595 +0.9 1.1 flagellar protein C compare
MMP_RS04145 +0.9 1.5 hypothetical protein compare
MMP_RS00345 +0.9 3.0 DUF2666 domain-containing protein compare
MMP_RS06325 +0.9 1.3 hypothetical protein compare
MMP_RS06870 +0.9 3.7 DedA family protein compare
MMP_RS08275 +0.9 4.0 hypothetical protein compare
MMP_RS05985 +0.9 1.7 hypothetical protein compare
MMP_RS00155 +0.9 3.8 heavy metal-binding domain-containing protein compare
MMP_RS01290 +0.9 5.2 class III signal peptide-containing protein compare
MMP_RS08370 +0.8 0.5 cation:proton antiporter subunit C compare
MMP_RS00655 +0.8 1.7 hypothetical protein compare
MMP_RS00430 +0.8 1.4 hypothetical protein compare
MMP_RS00325 +0.8 1.4 RNA-binding protein compare
MMP_RS07625 +0.8 2.1 cobalt ECF transporter T component CbiQ compare
MMP_RS00245 +0.8 5.9 type II secretion system F family protein compare
MMP_RS01270 +0.8 4.6 prepilin peptidase compare
MMP_RS00240 +0.8 5.2 type II secretion system F family protein compare
MMP_RS03150 +0.7 4.0 phosphoglycerate mutase compare
MMP_RS01570 +0.7 1.1 hypothetical protein compare
MMP_RS08670 +0.7 2.2 metallophosphoesterase compare
MMP_RS07960 +0.7 3.4 sugar phosphate isomerase/epimerase compare
MMP_RS07840 +0.7 1.5 ribonuclease III compare
MMP_RS08665 +0.7 4.9 hypothetical protein compare
MMP_RS05365 +0.7 1.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS06685 +0.7 3.8 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07805 +0.7 3.0 ABC transporter permease compare
MMP_RS00250 +0.7 4.5 Flp pilus assembly complex ATPase component TadA compare
MMP_RS05315 +0.7 1.3 hypothetical protein compare
MMP_RS06705 +0.7 3.2 formate/nitrite transporter family protein compare
MMP_RS00665 +0.7 2.0 hypothetical protein compare
MMP_RS00855 +0.7 1.7 DUF367 family protein compare
MMP_RS03890 +0.7 1.9 DUF2540 domain-containing protein compare
MMP_RS06910 +0.7 2.7 RlmF-related methyltransferase compare
MMP_RS01305 +0.7 4.6 hypothetical protein compare
MMP_RS06650 +0.7 3.3 glycoside hydrolase family 57 protein compare
MMP_RS06345 +0.7 3.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS02300 +0.6 1.9 NAD(P)H-dependent oxidoreductase compare
MMP_RS08445 +0.6 1.3 DUF2099 family protein compare
MMP_RS08280 +0.6 1.7 proteasome assembly chaperone family protein compare
MMP_RS07560 +0.6 1.8 prefoldin subunit alpha compare
MMP_RS06570 +0.6 1.9 DUF190 domain-containing protein compare
MMP_RS01310 +0.6 3.8 hypothetical protein compare
MMP_RS01525 +0.6 1.1 nucleoside-diphosphate kinase compare
MMP_RS08410 +0.6 2.7 DUF169 domain-containing protein compare
MMP_RS08340 +0.6 1.8 4Fe-4S binding protein compare
MMP_RS00335 +0.6 1.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS07900 +0.6 1.5 YeeE/YedE family protein compare
MMP_RS01965 +0.6 2.0 DUF1616 domain-containing protein compare
MMP_RS02475 +0.6 1.3 hypothetical protein compare
MMP_RS01495 +0.6 3.4 TraB/GumN family protein compare
MMP_RS04205 +0.6 3.0 carboxymuconolactone decarboxylase family protein compare
MMP_RS01650 +0.6 0.5 sulfurtransferase TusA family protein compare
MMP_RS00660 +0.6 3.2 alkaline phosphatase family protein compare
MMP_RS06990 +0.6 1.9 CatB-related O-acetyltransferase compare
MMP_RS08265 +0.6 2.2 rubrerythrin compare
MMP_RS00385 +0.5 1.9 P-II family nitrogen regulator compare
MMP_RS08390 +0.5 2.0 DUF5400 domain-containing protein compare
MMP_RS03065 +0.5 1.2 AzlC family ABC transporter permease compare
MMP_RS01285 +0.5 2.7 hypothetical protein compare
MMP_RS03675 +0.5 3.2 RimK family alpha-L-glutamate ligase compare
MMP_RS05795 +0.5 1.4 redox-regulated ATPase YchF compare
MMP_RS08260 +0.5 2.5 DUF99 family protein compare
MMP_RS08615 +0.5 1.0 flagellar protein G compare
MMP_RS01675 +0.5 0.8 hypothetical protein compare
MMP_RS05970 +0.5 1.2 class II SORL domain-containing protein compare
MMP_RS01785 +0.5 2.5 hypothetical protein compare
MMP_RS08075 +0.5 1.2 DUF749 domain-containing protein compare
MMP_RS08345 +0.5 3.2 4Fe-4S binding protein compare
MMP_RS08415 +0.5 0.8 radical SAM protein compare
MMP_RS00295 +0.5 0.9 gamma carbonic anhydrase family protein compare
MMP_RS08980 +0.5 2.3 hypothetical protein compare
MMP_RS07620 +0.5 1.1 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS01985 +0.5 1.6 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS05435 +0.5 2.6 5'/3'-nucleotidase SurE compare
MMP_RS08775 +0.5 1.5 methanogenesis marker 9 domain-containing protein compare
MMP_RS03900 +0.5 2.2 minichromosome maintenance protein MCM compare
MMP_RS08235 +0.5 1.8 hypothetical protein compare
MMP_RS00950 +0.5 1.5 site-2 protease family protein compare
MMP_RS08160 +0.5 2.0 EamA family transporter compare
MMP_RS09050 +0.5 0.8 CAP domain-containing protein compare
MMP_RS05715 +0.5 1.7 hypothetical protein compare
MMP_RS03220 +0.5 0.8 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS06680 +0.4 2.5 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS00290 +0.4 1.6 hypothetical protein compare
MMP_RS05720 +0.4 1.8 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS06215 +0.4 1.1 30S ribosomal protein S6e compare
MMP_RS01135 +0.4 2.9 molybdate ABC transporter substrate-binding protein compare
MMP_RS04840 +0.4 2.4 response regulator compare
MMP_RS01635 +0.4 2.0 thiamine pyrophosphate-dependent enzyme compare
MMP_RS03885 +0.4 1.9 tyrosine-type recombinase/integrase compare
MMP_RS08600 +0.4 0.7 flagellar protein D compare
MMP_RS02390 +0.4 1.4 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS02370 +0.4 0.8 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS01295 +0.4 2.4 hypothetical protein compare
MMP_RS01630 +0.4 2.2 N-glycosylase/DNA lyase compare
MMP_RS04190 +0.4 2.0 hypothetical protein compare
MMP_RS08285 +0.4 1.3 serine/threonine protein kinase compare
MMP_RS08700 +0.4 1.4 hypothetical protein compare
MMP_RS01260 +0.4 1.4 HDIG domain-containing protein compare
MMP_RS06075 +0.4 1.5 class I SAM-dependent methyltransferase compare
MMP_RS02375 +0.4 2.2 hypothetical protein compare
MMP_RS00085 +0.4 1.8 DNA cytosine methyltransferase compare
MMP_RS06760 +0.4 1.0 hypothetical protein compare
MMP_RS05090 +0.4 1.7 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05780 +0.4 2.2 multidrug resistance efflux transporter family protein compare
MMP_RS07915 +0.4 1.4 DUF4870 domain-containing protein compare
MMP_RS08770 +0.4 1.6 hypothetical protein compare
MMP_RS00450 +0.4 0.4 4Fe-4S binding protein compare
MMP_RS02770 +0.4 1.1 hypothetical protein compare
MMP_RS08335 +0.4 1.3 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS03115 +0.4 2.4 hypothetical protein compare
MMP_RS06840 +0.4 0.3 DNA-directed RNA polymerase subunit N compare
MMP_RS01485 +0.4 1.5 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS04060 +0.4 1.4 hypothetical protein compare
MMP_RS01120 +0.4 2.3 permease compare
MMP_RS05800 +0.4 1.8 B12-binding domain-containing radical SAM protein compare
MMP_RS04800 +0.4 1.8 chemotaxis protein CheW compare
MMP_RS01055 +0.4 1.3 hypothetical protein compare
MMP_RS09045 +0.4 2.1 class III signal peptide-containing protein compare
MMP_RS06660 +0.4 2.0 glycosyltransferase family 4 protein compare
MMP_RS06300 +0.4 1.6 ABC transporter substrate-binding protein compare
MMP_RS08380 +0.4 1.4 phosphatase PAP2 family protein compare
MMP_RS00120 +0.4 1.0 LysR family transcriptional regulator compare
MMP_RS08070 +0.4 1.6 DUF2096 domain-containing protein compare
MMP_RS09065 +0.4 2.1 hypothetical protein compare
MMP_RS06065 +0.4 2.7 iron ABC transporter substrate-binding protein compare
MMP_RS04315 +0.4 1.7 corrinoid protein compare
MMP_RS02000 +0.4 1.5 radical SAM protein compare
MMP_RS09025 +0.3 0.3 hypothetical protein compare
MMP_RS01855 +0.3 1.2 2-hydroxyacyl-CoA dehydratase family protein compare
MMP_RS04055 +0.3 0.5 hypothetical protein compare
MMP_RS03430 +0.3 1.6 bile acid:sodium symporter family protein compare
MMP_RS07150 +0.3 1.0 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS02415 +0.3 0.7 site-specific integrase compare
MMP_RS05175 +0.3 0.8 hypothetical protein compare
MMP_RS05785 +0.3 2.6 ATP-binding protein compare
MMP_RS08360 +0.3 1.0 hypothetical protein compare
MMP_RS04815 +0.3 1.6 chemotaxis protein CheD compare
MMP_RS04530 +0.3 1.4 ABC transporter permease compare
MMP_RS03215 +0.3 1.8 MBL fold metallo-hydrolase compare
MMP_RS03625 +0.3 1.1 cell wall-binding protein compare
MMP_RS00395 +0.3 0.4 MGMT family protein compare
MMP_RS01320 +0.3 1.3 hypothetical protein compare
MMP_RS04405 +0.3 1.7 hypothetical protein compare
MMP_RS00145 +0.3 1.5 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS08365 +0.3 1.1 energy conserving hydrogenase EhbF compare
MMP_RS06575 +0.3 0.9 fluoride efflux transporter CrcB compare
MMP_RS04635 +0.3 1.6 GNAT family N-acetyltransferase compare
MMP_RS01150 +0.3 1.1 aldo/keto reductase compare
MMP_RS08350 +0.3 0.3 hypothetical protein compare
MMP_RS09060 +0.3 2.1 hypothetical protein compare
MMP_RS03460 +0.3 1.0 U32 family peptidase compare
MMP_RS01550 +0.3 1.3 DUF1624 domain-containing protein compare
MMP_RS00195 +0.3 2.5 DUF4013 domain-containing protein compare
MMP_RS06710 +0.3 0.9 selenium-binding protein compare
MMP_RS09030 +0.3 1.1 hypothetical protein compare
MMP_RS01660 +0.3 0.9 hypothetical protein compare
MMP_RS08555 +0.3 0.7 hypothetical protein compare
MMP_RS05235 +0.3 1.2 exodeoxyribonuclease III compare
MMP_RS06280 +0.3 1.2 alpha-glucan family phosphorylase compare
MMP_RS04275 +0.3 1.2 hydrogenase iron-sulfur subunit compare
MMP_RS04995 +0.3 1.6 hypothetical protein compare
MMP_RS08750 +0.3 0.6 hypothetical protein compare
MMP_RS02310 +0.3 0.4 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS04960 +0.3 1.7 cytochrome c biogenesis CcdA family protein compare
MMP_RS05155 +0.3 1.2 hypothetical protein compare
MMP_RS02555 +0.3 2.2 AIPR family protein compare
MMP_RS08130 +0.3 1.6 IGHMBP2 family helicase compare
MMP_RS07125 +0.3 0.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS06145 +0.3 2.3 hypothetical protein compare
MMP_RS05490 +0.3 1.0 IMPACT family protein compare
MMP_RS05055 +0.3 1.7 DUF166 domain-containing protein compare
MMP_RS00080 +0.3 1.0 RecB-family nuclease compare
MMP_RS02745 +0.3 0.6 hypothetical protein compare
MMP_RS02280 +0.3 0.2 DUF211 domain-containing protein compare
MMP_RS06190 +0.3 1.2 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS08760 +0.3 0.6 hypothetical protein compare
MMP_RS06250 +0.3 1.2 hypothetical protein compare
MMP_RS02705 +0.3 1.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06930 +0.3 1.7 MBL fold metallo-hydrolase compare
MMP_RS00435 +0.3 1.6 CPBP family intramembrane metalloprotease compare
MMP_RS03965 +0.3 0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nitrogen source experiments