Experiment set7IT059 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Sebacic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04124 +4.2 5.8 Cys-tRNA(Pro) deacylase compare
H281DRAFT_05109 +3.0 23.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_05108 +2.8 14.5 membrane fusion protein, multidrug efflux system compare
H281DRAFT_00826 +2.5 19.8 Arabinose efflux permease compare
H281DRAFT_05561 +2.4 9.3 transcriptional regulator, TetR family compare
H281DRAFT_02008 +2.1 12.2 phosphocarrier protein compare
H281DRAFT_00827 +2.1 12.4 transcriptional regulator, MerR family compare
H281DRAFT_06190 +1.8 2.0 DNA-binding protein H-NS compare
H281DRAFT_04127 +1.8 6.1 methylated-DNA-[protein]-cysteine S-methyltransferase compare
H281DRAFT_04970 +1.7 2.4 high-affinity iron transporter compare
H281DRAFT_05314 +1.7 2.3 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_05021 +1.7 2.6 Response regulator compare
H281DRAFT_05876 +1.7 3.8 transcriptional regulator, TetR family compare
H281DRAFT_02007 +1.6 13.9 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_06276 +1.6 6.7 hypothetical protein compare
H281DRAFT_03094 +1.5 2.0 transcriptional regulator, MarR family compare
H281DRAFT_04128 +1.5 6.3 epoxyqueuosine reductase compare
H281DRAFT_00927 +1.5 5.1 UPF0755 protein compare
H281DRAFT_00819 +1.5 1.8 competence protein ComEA compare
H281DRAFT_01319 +1.5 2.1 Uncharacterized protein, UPF0264 family compare
H281DRAFT_01827 +1.5 2.1 hypothetical protein compare
H281DRAFT_04357 +1.5 7.3 sigma E regulatory protein, MucB/RseB compare
H281DRAFT_04425 +1.5 2.3 hypothetical protein compare
H281DRAFT_01042 +1.5 2.6 glycosyltransferase, MSMEG_0565 family compare
H281DRAFT_05641 +1.4 4.7 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_04246 +1.4 2.5 glutathione S-transferase compare
H281DRAFT_00717 +1.4 2.0 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_05110 +1.4 2.0 transcriptional regulator, MarR family compare
H281DRAFT_04904 +1.3 2.2 outer membrane transport energization protein ExbD compare
H281DRAFT_02966 +1.3 2.2 nucleoside-binding protein compare
H281DRAFT_04359 +1.3 1.6 Glutaredoxin and related proteins compare
H281DRAFT_00240 +1.3 8.5 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_06277 +1.3 3.7 hypothetical protein compare
H281DRAFT_02888 +1.3 3.5 hypothetical protein compare
H281DRAFT_02718 +1.2 1.9 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_06056 +1.2 7.6 histidine kinase (EC 2.7.13.3) compare
H281DRAFT_06134 +1.2 2.9 hypothetical protein compare
H281DRAFT_05286 +1.2 2.0 transcriptional regulator, LysR family compare
H281DRAFT_05899 +1.2 2.9 hypothetical protein compare
H281DRAFT_02691 +1.2 3.3 transcriptional regulator, ArsR family compare
H281DRAFT_04356 +1.2 2.4 anti sigma-E protein, RseA compare
H281DRAFT_01107 +1.2 1.5 hypothetical protein compare
H281DRAFT_00379 +1.2 1.6 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_06194 +1.2 2.1 Proteolipid membrane potential modulator compare
H281DRAFT_00779 +1.2 1.3 sulfate transport system permease protein compare
H281DRAFT_04623 +1.1 4.9 transcriptional regulator, TetR family compare
H281DRAFT_01825 +1.1 2.6 Outer membrane protein (porin) compare
H281DRAFT_03981 +1.1 1.7 Uncharacterized membrane protein compare
H281DRAFT_01331 +1.1 1.3 pyrroloquinoline-quinone synthase compare
H281DRAFT_05869 +1.1 2.2 2-iminobutanoate/2-iminopropanoate deaminase compare
H281DRAFT_01599 +1.1 1.0 GTP cyclohydrolase I compare
H281DRAFT_05649 +1.1 2.4 transcriptional regulator, BolA protein family compare
H281DRAFT_01105 +1.1 2.7 transcriptional regulator, AraC family compare
H281DRAFT_01222 +1.1 1.6 monosaccharide ABC transporter membrane protein, CUT2 family compare
H281DRAFT_02573 +1.1 1.7 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_05642 +1.1 3.7 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
H281DRAFT_06107 +1.1 2.8 GTPase, G3E family compare
H281DRAFT_03838 +1.1 2.5 hypothetical protein compare
H281DRAFT_01069 +1.1 1.6 Cytosine/adenosine deaminase compare
H281DRAFT_04201 +1.1 1.0 O-antigen ligase compare
H281DRAFT_01108 +1.0 1.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06385 +1.0 1.8 hypothetical protein compare
H281DRAFT_03165 +1.0 1.9 Flagellar motor protein MotB compare
H281DRAFT_01449 +1.0 2.1 RIO kinase 1 compare
H281DRAFT_03644 +1.0 1.5 betaine-aldehyde dehydrogenase compare
H281DRAFT_01377 +1.0 1.5 hypothetical protein compare
H281DRAFT_06003 +1.0 1.4 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_04171 +1.0 3.6 membrane fusion protein, multidrug efflux system compare
H281DRAFT_04492 +1.0 6.2 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06399 +1.0 1.4 transcriptional regulator, GntR family compare
H281DRAFT_02741 +1.0 1.8 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_05645 +1.0 3.1 phospholipid transport system substrate-binding protein compare
H281DRAFT_02708 +1.0 3.7 5'-methylthioribose kinase compare
H281DRAFT_02662 +1.0 0.9 Predicted xylanase/chitin deacetylase compare
H281DRAFT_02944 +1.0 2.0 aldehyde dehydrogenase (NAD+) compare
H281DRAFT_03400 +1.0 1.6 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_03069 +1.0 1.2 Uncharacterized conserved protein compare
H281DRAFT_05980 +1.0 1.4 Catechol 2,3-dioxygenase compare
H281DRAFT_04170 +1.0 4.5 multidrug efflux pump compare
H281DRAFT_00010 +1.0 2.2 nitrile hydratase compare
H281DRAFT_02441 +1.0 1.2 putative ABC transport system ATP-binding protein compare
H281DRAFT_04889 +1.0 1.1 hypothetical protein compare
H281DRAFT_05643 +1.0 3.8 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
H281DRAFT_06546 +1.0 3.3 hypothetical protein compare
H281DRAFT_04680 +1.0 2.1 hypothetical protein compare
H281DRAFT_04896 +1.0 1.3 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_03748 +0.9 2.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_06053 +0.9 2.4 4-alpha-glucanotransferase compare
H281DRAFT_03906 +0.9 4.1 D-methionine transport system ATP-binding protein compare
H281DRAFT_04382 +0.9 3.9 hypothetical protein compare
H281DRAFT_01192 +0.9 1.3 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_05157 +0.9 1.6 allantoin racemase compare
H281DRAFT_01632 +0.9 6.4 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_01227 +0.9 1.2 L-rhamnose 1-dehydrogenase compare
H281DRAFT_03419 +0.9 1.2 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-) compare
H281DRAFT_01122 +0.9 1.7 hypothetical protein compare
H281DRAFT_05864 +0.9 2.0 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_01837 +0.9 1.5 hypothetical protein compare
H281DRAFT_02910 +0.9 1.5 conserved hypothetical protein compare
H281DRAFT_05537 +0.9 1.1 transcriptional regulator, IclR family compare
H281DRAFT_03749 +0.9 1.1 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01025 +0.9 1.2 transcriptional regulator, MarR family compare
H281DRAFT_03335 +0.9 2.0 transcriptional regulator, LysR family compare
H281DRAFT_00236 +0.9 3.2 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_06462 +0.9 1.7 hypothetical protein compare
H281DRAFT_05610 +0.9 1.0 hypothetical protein compare
H281DRAFT_03835 +0.9 2.7 NitT/TauT family transport system permease protein compare
H281DRAFT_05890 +0.9 1.3 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_00531 +0.9 2.1 hypothetical protein compare
H281DRAFT_04169 +0.9 3.6 outer membrane protein, multidrug efflux system compare
H281DRAFT_02700 +0.9 2.4 feruloyl esterase compare
H281DRAFT_05122 +0.9 2.5 host factor-I protein compare
H281DRAFT_00949 +0.9 2.8 Glycosyltransferase, GT2 family compare
H281DRAFT_03314 +0.9 1.1 hypothetical protein compare
H281DRAFT_02677 +0.9 2.3 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_05468 +0.9 1.9 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_05830 +0.9 0.7 hypothetical protein compare
H281DRAFT_01538 +0.9 2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00426 +0.9 2.3 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_01210 +0.9 1.8 Protein of unknown function (DUF1488) compare
H281DRAFT_03289 +0.9 1.1 Glycosyltransferase, GT2 family compare
H281DRAFT_03287 +0.9 1.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00690 +0.8 2.2 NADPH:quinone reductase compare
H281DRAFT_02705 +0.8 1.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_06350 +0.8 2.3 hypothetical protein compare
H281DRAFT_05887 +0.8 1.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_04150 +0.8 2.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_06357 +0.8 1.1 hypothetical protein compare
H281DRAFT_02832 +0.8 1.2 hypothetical protein compare
H281DRAFT_05183 +0.8 1.6 putrescine transport system permease protein compare
H281DRAFT_01513 +0.8 3.0 hippurate hydrolase compare
H281DRAFT_02931 +0.8 3.5 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_01207 +0.8 2.5 SPFH domain, Band 7 family protein compare
H281DRAFT_00663 +0.8 1.2 assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4) compare
H281DRAFT_01276 +0.8 2.0 vanillin synthase /trans-feruloyl-CoA hydratase compare
H281DRAFT_01322 +0.8 0.9 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_05281 +0.8 1.0 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_01188 +0.8 1.8 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_02747 +0.8 1.7 hypothetical protein compare
H281DRAFT_00248 +0.8 1.5 hypothetical protein compare
H281DRAFT_02856 +0.8 1.1 Protein of unknown function (DUF1488) compare
H281DRAFT_02903 +0.8 1.7 L-lactate dehydrogenase complex protein LldG compare
H281DRAFT_03745 +0.8 0.6 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_05323 +0.8 0.8 hypothetical protein compare
H281DRAFT_01866 +0.8 2.5 taurine dioxygenase compare
H281DRAFT_03537 +0.8 1.4 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_02958 +0.8 1.1 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_05216 +0.8 1.3 Protein of unknown function (DUF3022) compare
H281DRAFT_02817 +0.8 3.3 hypothetical protein compare
H281DRAFT_04369 +0.8 1.9 Uncharacterized conserved protein YjbJ, UPF0337 family compare
H281DRAFT_02235 +0.8 2.5 multi-sensor signal transduction histidine kinase compare
H281DRAFT_00419 +0.8 1.5 transcriptional regulator, LacI family compare
H281DRAFT_01412 +0.8 1.2 Superinfection immunity protein compare
H281DRAFT_05949 +0.8 1.4 gluconolactonase compare
H281DRAFT_04999 +0.8 1.4 type III secretion protein HrpB7 compare
H281DRAFT_06320 +0.8 2.8 biopolymer transport protein ExbD compare
H281DRAFT_01356 +0.8 1.5 uncharacterized peroxidase-related enzyme compare
H281DRAFT_05768 +0.8 1.4 flagellar L-ring protein precursor FlgH compare
H281DRAFT_02614 +0.8 1.4 L-glutamine ABC transporter membrane protein compare
H281DRAFT_02186 +0.8 3.4 hypothetical protein compare
H281DRAFT_04721 +0.8 0.5 Cell division and transport-associated protein TolR compare
H281DRAFT_03203 +0.8 2.2 hypothetical protein compare
H281DRAFT_01688 +0.8 1.9 aliphatic nitrilase compare
H281DRAFT_03738 +0.8 1.8 hypothetical protein compare
H281DRAFT_03946 +0.8 1.1 transcriptional regulator, ArsR family compare
H281DRAFT_04886 +0.8 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06204 +0.8 1.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
H281DRAFT_06043 +0.8 2.3 hypothetical protein compare
H281DRAFT_00254 +0.8 3.8 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_02231 +0.8 1.1 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_03201 +0.8 1.2 transcriptional regulator, XRE family compare
H281DRAFT_01006 +0.8 1.7 Fatty acid hydroxylase superfamily protein compare
H281DRAFT_03485 +0.8 2.0 osmoprotectant transport system ATP-binding protein compare
H281DRAFT_00757 +0.8 0.8 hypothetical protein compare
H281DRAFT_02362 +0.7 4.0 carboxylate-amine ligase compare
H281DRAFT_05159 +0.7 1.3 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_06087 +0.7 1.6 Uncharacterized membrane protein compare
H281DRAFT_00378 +0.7 0.5 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_03796 +0.7 1.5 protein of unknown function (DUF4148) compare
H281DRAFT_06049 +0.7 4.8 trehalose synthase compare
H281DRAFT_03371 +0.7 1.2 outer membrane protein, multidrug efflux system compare
H281DRAFT_02116 +0.7 1.8 transcriptional regulator, LacI family compare
H281DRAFT_03384 +0.7 1.0 Cytochrome c, mono- and diheme variants compare
H281DRAFT_01807 +0.7 2.3 transcriptional regulator, IclR family compare
H281DRAFT_03637 +0.7 1.8 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02552 +0.7 1.9 hypothetical protein compare
H281DRAFT_06376 +0.7 2.1 transcriptional regulator, LysR family compare
H281DRAFT_06445 +0.7 0.8 Molybdopterin synthase catalytic subunit compare
H281DRAFT_01114 +0.7 1.5 deoxynucleoside transporter, substrate-binding component (from data) compare
H281DRAFT_06536 +0.7 1.4 rare lipoprotein A compare
H281DRAFT_05041 +0.7 0.9 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_04544 +0.7 1.2 diacylglycerol kinase (ATP) compare
H281DRAFT_03719 +0.7 1.6 Zn-dependent hydrolases, including glyoxylases compare
H281DRAFT_04640 +0.7 1.5 dimethyladenosine transferase compare
H281DRAFT_01749 +0.7 0.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04002 +0.7 1.3 tRNA_Arg_ACG compare
H281DRAFT_00682 +0.7 2.1 Acyl-CoA dehydrogenases compare
H281DRAFT_04431 +0.7 2.8 Membrane-bound metallopeptidase compare
H281DRAFT_00902 +0.7 1.8 peptidyl-prolyl cis-trans isomerase D compare
H281DRAFT_02479 +0.7 1.8 transcriptional regulator, LysR family compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Sebacic acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source Sebacic acid across organisms