Experiment set7IT059 for Paraburkholderia bryophila 376MFSha3.1
Sebacic acid carbon source
Group: carbon sourceMedia: MOPS minimal media_noCarbon + Sebacic acid (10 mM)
Culturing: Burk376_ML3_JBEI, tube, Aerobic, at 30 (C), shaken=200 rpm
Growth: about 1.6 generations
By: Allie Pearson on 8/26/19
Media components: 40 mM 3-(N-morpholino)propanesulfonic acid, 4 mM Tricine, 1.32 mM Potassium phosphate dibasic, 0.01 mM Iron (II) sulfate heptahydrate, 9.5 mM Ammonium chloride, 0.276 mM Aluminum potassium sulfate dodecahydrate, 0.0005 mM Calcium chloride, 0.525 mM Magnesium chloride hexahydrate, 50 mM Sodium Chloride, 3e-09 M Ammonium heptamolybdate tetrahydrate, 4e-07 M Boric Acid, 3e-08 M Cobalt chloride hexahydrate, 1e-08 M Copper (II) sulfate pentahydrate, 8e-08 M Manganese (II) chloride tetrahydrate, 1e-08 M Zinc sulfate heptahydrate
Specific Phenotypes
For 8 genes in this experiment
For carbon source Sebacic acid in Paraburkholderia bryophila 376MFSha3.1
For carbon source Sebacic acid across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria | 2 |
| DNA repair, bacterial | 1 |
| Menaquinone and Phylloquinone Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ubiquinone and menaquinone biosynthesis
- Purine metabolism
- Puromycin biosynthesis
- Nucleotide sugars metabolism
- Lipopolysaccharide biosynthesis
- alpha-Linolenic acid metabolism
- Trinitrotoluene degradation
- Folate biosynthesis
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: